Wall clock time and date at job start Mon Mar 30 2020 06:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 O 1.42100 * 109.46600 * 296.38822 * 11 10 9 13 13 C 1.81397 * 103.00143 * 180.02562 * 11 10 9 14 14 C 1.50695 * 109.47452 * 180.02562 * 13 11 10 15 15 O 1.21445 * 119.99689 * 359.97438 * 14 13 11 16 16 C 1.41233 * 120.00068 * 179.97438 * 14 13 11 17 17 C 1.37187 * 125.47775 * 180.02562 * 16 14 13 18 18 C 1.37206 * 113.24035 * 180.02562 * 17 16 14 19 19 C 1.34013 * 115.14763 * 359.97438 * 18 17 16 20 20 S 1.70615 * 111.00017 * 359.72628 * 19 18 17 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 26 26 H 1.09007 * 109.46846 * 299.99983 * 13 11 10 27 27 H 1.09007 * 109.47453 * 59.99610 * 13 11 10 28 28 H 1.07998 * 123.38272 * 359.96028 * 17 16 14 29 29 H 1.07997 * 122.42305 * 180.02562 * 18 17 16 30 30 H 1.07999 * 124.49802 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 16 1.3384 -5.2331 0.0021 12 8 0.5864 -5.3453 1.2026 13 6 2.6650 -6.4702 0.0025 14 6 2.0635 -7.8519 0.0024 15 8 0.8568 -7.9888 0.0026 16 6 2.9031 -8.9876 0.0021 17 6 2.4780 -10.2920 0.0015 18 6 3.5090 -11.1973 0.0020 19 6 4.7374 -10.6616 0.0023 20 16 4.6611 -8.9572 -0.0054 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5564 0.8919 24 1 2.8714 -3.6047 -0.8890 25 1 2.8726 -3.6039 0.8910 26 1 3.2811 -6.3425 -0.8876 27 1 3.2813 -6.3419 0.8924 28 1 1.4365 -10.5776 0.0018 29 1 3.3426 -12.2644 0.0012 30 1 5.6539 -11.2329 0.0023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526906867.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:46 Heat of formation + Delta-G solvation = -45.173050 kcal Electronic energy + Delta-G solvation = -15482.307252 eV Core-core repulsion = 12689.309561 eV Total energy + Delta-G solvation = -2792.997691 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 272.033 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.78103 -37.58365 -35.12234 -33.65197 -31.50086 -30.84373 -29.20984 -25.43631 -25.10404 -21.80569 -20.96413 -19.51818 -17.75851 -17.04928 -16.53152 -16.10838 -15.53508 -15.29999 -14.77682 -14.45281 -14.04010 -13.93400 -13.32079 -13.22575 -13.09795 -12.55885 -12.49635 -12.29871 -11.64518 -11.28330 -11.23206 -10.97935 -10.71768 -10.20841 -10.12107 -10.05009 -9.45626 -9.20858 -9.06215 -8.93973 -8.40770 -7.67152 -6.03173 -4.07513 0.00404 1.19298 1.58726 1.89303 1.91169 2.71693 3.17058 3.29251 3.36733 3.40191 3.95762 4.37228 4.44858 4.59731 4.97392 5.05684 5.12682 5.17638 5.31735 5.45380 5.62046 5.87823 5.96257 5.97630 6.15533 6.82483 7.32125 7.51716 7.63051 7.91984 8.33239 8.97513 9.56572 11.07458 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.043908 B = 0.003511 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.544906 B = 7973.937629 C = 8524.053912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.427 4.427 11 S 1.261 4.739 12 O -0.834 6.834 13 C -0.528 4.528 14 C 0.450 3.550 15 O -0.440 6.440 16 C -0.296 4.296 17 C -0.048 4.048 18 C -0.157 4.157 19 C -0.231 4.231 20 S 0.232 5.768 21 H 0.262 0.738 22 H 0.029 0.971 23 H 0.023 0.977 24 H 0.106 0.894 25 H 0.072 0.928 26 H 0.145 0.855 27 H 0.115 0.885 28 H 0.155 0.845 29 H 0.145 0.855 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.665 -21.472 -4.790 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.566 4.566 11 S 1.458 4.542 12 O -0.829 6.829 13 C -0.660 4.660 14 C 0.327 3.673 15 O -0.316 6.316 16 C -0.416 4.416 17 C -0.082 4.082 18 C -0.188 4.188 19 C -0.369 4.369 20 S 0.500 5.500 21 H 0.072 0.928 22 H 0.048 0.952 23 H 0.041 0.959 24 H 0.124 0.876 25 H 0.091 0.909 26 H 0.163 0.837 27 H 0.133 0.867 28 H 0.173 0.827 29 H 0.163 0.837 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 10.042 -20.493 -4.768 23.314 hybrid contribution 1.092 -0.107 1.878 2.175 sum 11.134 -20.600 -2.889 23.594 Atomic orbital electron populations 1.69970 1.06048 1.26757 1.50308 1.25055 0.94911 0.99352 0.95211 0.86490 0.79984 0.83582 0.77667 1.19756 1.20824 1.21004 1.21192 0.93033 0.90407 1.51161 0.92421 1.18791 0.93000 0.90123 0.98203 1.27728 1.09866 1.13059 1.05970 1.70891 0.85219 0.85686 1.12387 1.93091 1.55474 1.83684 1.50667 1.28546 1.19505 1.08933 1.09044 1.19193 0.88037 0.88060 0.71982 1.90663 1.15884 1.88567 1.36532 1.24201 0.98679 0.99035 1.19639 1.21083 1.01485 0.90482 0.95124 1.20070 0.91221 1.01676 1.05834 1.25569 1.02869 1.00637 1.07827 1.83172 1.00361 1.00694 1.65779 0.92819 0.95245 0.95861 0.87559 0.90941 0.83719 0.86676 0.82742 0.83746 0.81334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.04 0.97 4.98 -27.88 -0.14 0.83 16 10 C -0.43 -8.31 5.86 37.16 0.22 -8.09 16 11 S 1.26 21.43 12.37 -107.50 -1.33 20.10 16 12 O -0.83 -19.83 17.94 -36.28 -0.65 -20.48 16 13 C -0.53 -6.72 5.70 36.00 0.21 -6.51 16 14 C 0.45 6.29 6.95 -33.17 -0.23 6.06 16 15 O -0.44 -7.52 16.08 4.37 0.07 -7.45 16 16 C -0.30 -3.39 6.23 -38.83 -0.24 -3.63 16 17 C -0.05 -0.49 9.95 -40.34 -0.40 -0.89 16 18 C -0.16 -1.23 10.14 -41.44 -0.42 -1.65 16 19 C -0.23 -1.63 10.93 29.25 0.32 -1.31 16 20 S 0.23 1.93 22.42 -107.50 -2.41 -0.48 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 22 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.11 1.73 8.14 -51.92 -0.42 1.30 16 25 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 26 H 0.14 1.26 8.14 -51.92 -0.42 0.84 16 27 H 0.11 1.43 8.14 -51.92 -0.42 1.01 16 28 H 0.16 1.48 8.02 -52.49 -0.42 1.06 16 29 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 297.30 15.07 4.48 4.48 Total: -1.00 -37.48 297.30 -8.57 -46.05 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: -3.34 Total: -3.94 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -1.10 Total: -28.62 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.58 Total: -27.92 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 23.37 SS G_CDS: -3.74 Total: 19.63 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -37.48 -8.57 -46.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526906867.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.879 kcal (2) G-P(sol) polarization free energy of solvation -37.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds