Wall clock time and date at job start Mon Mar 30 2020 06:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 O 1.42100 * 109.46600 * 296.38822 * 11 10 9 13 13 C 1.81397 * 103.00143 * 180.02562 * 11 10 9 14 14 C 1.50695 * 109.47452 * 180.02562 * 13 11 10 15 15 O 1.21445 * 119.99689 * 359.97438 * 14 13 11 16 16 C 1.41233 * 120.00068 * 179.97438 * 14 13 11 17 17 C 1.37187 * 125.47775 * 180.02562 * 16 14 13 18 18 C 1.37206 * 113.24035 * 180.02562 * 17 16 14 19 19 C 1.34013 * 115.14763 * 359.97438 * 18 17 16 20 20 S 1.70615 * 111.00017 * 359.72628 * 19 18 17 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 26 26 H 1.09007 * 109.46846 * 299.99983 * 13 11 10 27 27 H 1.09007 * 109.47453 * 59.99610 * 13 11 10 28 28 H 1.07998 * 123.38272 * 359.96028 * 17 16 14 29 29 H 1.07997 * 122.42305 * 180.02562 * 18 17 16 30 30 H 1.07999 * 124.49802 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 16 1.3384 -5.2331 0.0021 12 8 0.5864 -5.3453 1.2026 13 6 2.6650 -6.4702 0.0025 14 6 2.0635 -7.8519 0.0024 15 8 0.8568 -7.9888 0.0026 16 6 2.9031 -8.9876 0.0021 17 6 2.4780 -10.2920 0.0015 18 6 3.5090 -11.1973 0.0020 19 6 4.7374 -10.6616 0.0023 20 16 4.6611 -8.9572 -0.0054 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5564 0.8919 24 1 2.8714 -3.6047 -0.8890 25 1 2.8726 -3.6039 0.8910 26 1 3.2811 -6.3425 -0.8876 27 1 3.2813 -6.3419 0.8924 28 1 1.4365 -10.5776 0.0018 29 1 3.3426 -12.2644 0.0012 30 1 5.6539 -11.2329 0.0023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526906867.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:46 Heat of formation + Delta-G solvation = -72.132903 kcal Electronic energy + Delta-G solvation = -15483.476319 eV Core-core repulsion = 12689.309561 eV Total energy + Delta-G solvation = -2794.166758 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 272.033 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.79633 -38.33390 -36.79311 -35.71829 -32.88247 -32.46306 -30.06413 -27.34436 -25.98595 -23.35510 -22.21120 -20.24904 -18.80618 -18.65525 -18.27450 -17.03131 -16.68228 -16.57514 -16.31039 -15.88815 -15.58308 -15.13948 -14.69905 -14.30360 -14.21382 -13.74432 -13.71911 -13.41725 -13.16101 -12.99032 -12.77913 -12.57261 -11.99921 -11.92469 -11.86816 -11.53236 -11.25807 -10.79037 -10.60004 -9.92973 -9.55553 -9.16798 -8.20531 -6.34283 -0.76907 0.48593 0.53463 0.94110 1.13096 1.40647 1.41741 1.54822 1.79948 1.88594 2.40890 2.78473 3.11592 3.14432 4.02935 4.10351 4.21012 4.30871 4.34733 4.47962 4.50416 4.52887 4.99991 5.03771 5.21498 5.32677 5.43580 5.51432 5.77771 6.17493 6.30276 6.81453 7.35377 8.90882 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.043908 B = 0.003511 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.544906 B = 7973.937629 C = 8524.053912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.285 1.285 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.033 3.967 10 C -0.421 4.421 11 S 1.293 4.707 12 O -0.912 6.912 13 C -0.512 4.512 14 C 0.448 3.552 15 O -0.489 6.489 16 C -0.343 4.343 17 C -0.047 4.047 18 C -0.169 4.169 19 C -0.211 4.211 20 S 0.266 5.734 21 H 0.265 0.735 22 H 0.023 0.977 23 H -0.027 1.027 24 H 0.147 0.853 25 H 0.065 0.935 26 H 0.196 0.804 27 H 0.127 0.873 28 H 0.148 0.852 29 H 0.169 0.831 30 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.406 -22.681 -5.861 27.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.211 1.211 7 C -0.578 4.578 8 H 0.087 0.913 9 C -0.005 4.005 10 C -0.560 4.560 11 S 1.494 4.506 12 O -0.907 6.907 13 C -0.648 4.648 14 C 0.329 3.671 15 O -0.370 6.370 16 C -0.461 4.461 17 C -0.082 4.082 18 C -0.199 4.199 19 C -0.349 4.349 20 S 0.535 5.465 21 H 0.074 0.926 22 H 0.041 0.959 23 H -0.009 1.009 24 H 0.165 0.835 25 H 0.084 0.916 26 H 0.213 0.787 27 H 0.145 0.855 28 H 0.166 0.834 29 H 0.187 0.813 30 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 13.790 -21.665 -5.841 26.338 hybrid contribution 0.071 0.043 2.191 2.193 sum 13.861 -21.622 -3.650 25.941 Atomic orbital electron populations 1.70120 1.08021 1.27951 1.51445 1.26098 0.95822 1.03742 0.94658 0.85308 0.79146 0.78290 0.77737 1.18081 1.19766 1.21088 1.21693 0.93804 0.91575 1.50728 0.91283 1.18665 0.93776 0.92573 0.95501 1.27586 1.08679 1.12087 1.07602 1.69990 0.85488 0.84967 1.10141 1.92982 1.59782 1.85007 1.52976 1.28344 1.17814 1.06444 1.12158 1.19500 0.87765 0.89132 0.70656 1.90659 1.17743 1.89108 1.39504 1.24058 1.00661 0.98406 1.23022 1.21303 1.02115 0.90769 0.94027 1.20273 0.90771 1.02629 1.06187 1.26062 1.03897 1.00282 1.04657 1.82998 0.97121 1.01606 1.64824 0.92629 0.95915 1.00874 0.83471 0.91571 0.78656 0.85499 0.83435 0.81333 0.77962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.13 13.29 21.45 0.28 -57.85 16 2 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 3 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 7 C -0.54 -30.69 9.11 25.60 0.23 -30.45 16 8 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 9 C 0.03 1.78 4.98 29.85 0.15 1.92 16 10 C -0.42 -16.24 5.86 71.98 0.42 -15.82 16 11 S 1.29 44.69 12.37 -56.49 -0.70 43.99 16 12 O -0.91 -45.82 17.94 -147.98 -2.65 -48.47 16 13 C -0.51 -12.05 5.70 71.23 0.41 -11.64 16 14 C 0.45 12.30 6.95 26.42 0.18 12.49 16 15 O -0.49 -17.37 16.08 -2.54 -0.04 -17.41 16 16 C -0.34 -7.29 6.23 22.76 0.14 -7.15 16 17 C -0.05 -0.89 9.95 21.78 0.22 -0.68 16 18 C -0.17 -2.11 10.14 21.06 0.21 -1.89 16 19 C -0.21 -2.07 10.93 66.86 0.73 -1.34 16 20 S 0.27 3.48 22.42 -56.49 -1.27 2.21 16 21 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 22 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 23 H -0.03 -1.71 8.14 -2.39 -0.02 -1.73 16 24 H 0.15 4.38 8.14 -2.39 -0.02 4.36 16 25 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.20 2.57 8.14 -2.39 -0.02 2.56 16 27 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.15 2.86 8.02 -2.91 -0.02 2.84 16 29 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 30 H 0.20 0.62 8.06 -2.91 -0.02 0.59 16 Total: -1.00 -86.58 297.30 1.95 -84.63 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: 1.14 Total: 1.07 kcal Atomic # 6 Polarization: -57.57 SS G_CDS: 3.16 Total: -54.41 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.28 Total: -57.85 kcal Atomic # 8 Polarization: -63.19 SS G_CDS: -2.69 Total: -65.88 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 48.17 SS G_CDS: -1.97 Total: 46.20 kcal Total: -86.58 1.95 -84.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526906867.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.501 kcal (2) G-P(sol) polarization free energy of solvation -86.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds