Wall clock time and date at job start Mon Mar 30 2020 06:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99788 * 2 1 4 4 H 1.48493 * 109.47466 * 270.00013 * 3 2 1 5 5 H 1.48501 * 109.46914 * 30.00417 * 3 2 1 6 6 H 1.48507 * 109.46739 * 150.00133 * 3 2 1 7 7 C 1.37880 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00025 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99753 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46827 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.46960 * 180.02562 * 10 9 7 12 12 O 1.42103 * 109.47126 * 63.61933 * 11 10 9 13 13 C 1.81408 * 102.99810 * 180.02562 * 11 10 9 14 14 C 1.50706 * 109.46846 * 180.02562 * 13 11 10 15 15 O 1.21440 * 120.00142 * 0.02562 * 14 13 11 16 16 C 1.41234 * 119.99560 * 180.02562 * 14 13 11 17 17 C 1.37183 * 125.47922 * 180.02562 * 16 14 13 18 18 C 1.37196 * 113.24427 * 180.02562 * 17 16 14 19 19 C 1.34018 * 115.15024 * 359.97438 * 18 17 16 20 20 S 1.70615 * 110.99711 * 359.73287 * 19 18 17 21 21 H 0.97003 * 120.00374 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46758 * 60.00594 * 9 7 2 23 23 H 1.08997 * 109.47547 * 299.99923 * 9 7 2 24 24 H 1.09005 * 109.46565 * 60.00353 * 10 9 7 25 25 H 1.08997 * 109.47094 * 300.00322 * 10 9 7 26 26 H 1.09000 * 109.46602 * 60.00357 * 13 11 10 27 27 H 1.09000 * 109.47286 * 300.00088 * 13 11 10 28 28 H 1.08005 * 123.37738 * 359.97008 * 17 16 14 29 29 H 1.08007 * 122.42658 * 180.02562 * 18 17 16 30 30 H 1.07999 * 124.50762 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 16 5.8355 -2.6364 -0.0009 12 8 6.3091 -2.0410 1.1993 13 6 6.2436 -4.4040 -0.0016 14 6 7.7411 -4.5738 -0.0010 15 8 8.4629 -3.5972 0.0003 16 6 8.3049 -5.8687 -0.0018 17 6 9.6470 -6.1528 -0.0009 18 6 9.9156 -7.4982 -0.0027 19 6 8.8375 -8.2943 -0.0045 20 16 7.3996 -7.3761 0.0034 21 1 -0.4851 0.8400 -0.0004 22 1 3.8751 -0.6804 0.8889 23 1 3.8746 -0.6800 -0.8911 24 1 3.6579 -3.1504 -0.8908 25 1 3.6586 -3.1501 0.8892 26 1 5.8247 -4.8732 -0.8918 27 1 5.8247 -4.8740 0.8882 28 1 10.4151 -5.3935 0.0002 29 1 10.9231 -7.8876 -0.0019 30 1 8.8740 -9.3736 -0.0064 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526906871.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:49 Heat of formation + Delta-G solvation = -41.363152 kcal Electronic energy + Delta-G solvation = -15533.906586 eV Core-core repulsion = 12741.074105 eV Total energy + Delta-G solvation = -2792.832481 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 272.033 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.84023 -37.62595 -35.25440 -33.68617 -31.56673 -31.21011 -29.27277 -25.69262 -25.20036 -21.74881 -20.72744 -19.55823 -17.82350 -17.29782 -16.78388 -16.20791 -15.61540 -15.35255 -14.91012 -14.30654 -14.19293 -13.83225 -13.47853 -13.30991 -13.13080 -12.67417 -12.62040 -12.52654 -11.82525 -11.49759 -11.27966 -11.04148 -10.64671 -10.27389 -10.23581 -9.89813 -9.46955 -9.24733 -9.22823 -8.97123 -8.57592 -7.79400 -6.08223 -4.07674 -0.03663 1.15935 1.55376 1.76644 1.86814 2.66779 3.02810 3.30809 3.39149 3.45949 3.87501 4.27150 4.43689 4.56904 4.93789 5.00012 5.07540 5.11280 5.25205 5.38942 5.58463 5.83156 5.84406 5.93908 5.96872 6.60596 7.06378 7.20970 7.25578 7.69551 8.47935 8.94572 9.53072 11.04699 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.046580 B = 0.003698 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.976952 B = 7569.826649 C = 8080.718799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.518 4.518 8 H 0.073 0.927 9 C 0.003 3.997 10 C -0.420 4.420 11 S 1.257 4.743 12 O -0.834 6.834 13 C -0.525 4.525 14 C 0.451 3.549 15 O -0.441 6.441 16 C -0.298 4.298 17 C -0.047 4.047 18 C -0.158 4.158 19 C -0.230 4.230 20 S 0.234 5.766 21 H 0.264 0.736 22 H 0.022 0.978 23 H 0.024 0.976 24 H 0.112 0.888 25 H 0.078 0.922 26 H 0.147 0.853 27 H 0.117 0.883 28 H 0.155 0.845 29 H 0.145 0.855 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.110 -17.589 -4.763 25.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.700 3.300 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.559 4.559 11 S 1.454 4.546 12 O -0.830 6.830 13 C -0.658 4.658 14 C 0.328 3.672 15 O -0.318 6.318 16 C -0.418 4.418 17 C -0.081 4.081 18 C -0.189 4.189 19 C -0.368 4.368 20 S 0.502 5.498 21 H 0.074 0.926 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.130 0.870 25 H 0.097 0.903 26 H 0.165 0.835 27 H 0.135 0.865 28 H 0.172 0.828 29 H 0.163 0.837 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 17.433 -16.627 -4.719 24.549 hybrid contribution 0.868 -0.236 1.846 2.054 sum 18.301 -16.863 -2.873 25.051 Atomic orbital electron populations 1.69899 1.06284 1.27063 1.50760 1.25013 0.94775 0.99211 0.94357 0.86864 0.80721 0.83573 0.78881 1.19758 1.21143 1.18672 1.21028 0.88717 0.94599 1.51393 0.90853 1.19241 0.98155 0.88999 0.97177 1.27556 1.15429 1.06089 1.06804 1.70851 0.88775 0.82532 1.12461 1.93095 1.74752 1.64413 1.50722 1.28501 0.99833 1.28112 1.09310 1.19176 0.89373 0.86692 0.71937 1.90660 1.63655 1.40799 1.36673 1.24178 0.98239 0.99489 1.19847 1.21076 0.95055 0.96897 0.95043 1.20073 1.00364 0.92547 1.05877 1.25583 0.98137 1.05403 1.07665 1.83200 1.06846 0.94082 1.65674 0.92589 0.95936 0.95771 0.86974 0.90334 0.83518 0.86491 0.82762 0.83725 0.81292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.85 27.47 -169.99 -4.67 17.18 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.00 0.08 4.05 -27.88 -0.11 -0.04 16 10 C -0.42 -7.77 5.86 37.16 0.22 -7.55 16 11 S 1.26 20.01 12.37 -107.50 -1.33 18.68 16 12 O -0.83 -18.79 17.93 -36.31 -0.65 -19.44 16 13 C -0.53 -6.31 5.70 36.01 0.21 -6.11 16 14 C 0.45 6.02 6.95 -33.17 -0.23 5.79 16 15 O -0.44 -7.22 16.08 4.34 0.07 -7.15 16 16 C -0.30 -3.27 6.23 -38.83 -0.24 -3.51 16 17 C -0.05 -0.46 9.95 -40.34 -0.40 -0.86 16 18 C -0.16 -1.18 10.14 -41.44 -0.42 -1.60 16 19 C -0.23 -1.56 10.93 29.25 0.32 -1.24 16 20 S 0.23 1.88 22.42 -107.50 -2.41 -0.53 16 21 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 22 H 0.02 0.58 7.20 -51.93 -0.37 0.20 16 23 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 24 H 0.11 1.75 8.14 -51.92 -0.42 1.33 16 25 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 26 H 0.15 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.12 1.38 8.14 -51.92 -0.42 0.96 16 28 H 0.15 1.41 8.02 -52.48 -0.42 0.99 16 29 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 30 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 293.70 15.07 4.43 4.43 Total: -1.00 -37.75 293.70 -8.20 -45.94 By element: Atomic # 1 Polarization: -0.45 SS G_CDS: -3.31 Total: -3.76 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: -1.09 Total: -28.33 kcal Atomic # 7 Polarization: -27.78 SS G_CDS: 0.77 Total: -27.01 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.58 Total: -26.59 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Atomic # 16 Polarization: 21.88 SS G_CDS: -3.74 Total: 18.14 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -37.75 -8.20 -45.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526906871.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.580 kcal (2) G-P(sol) polarization free energy of solvation -37.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds