Wall clock time and date at job start Mon Mar 30 2020 05:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47079 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.46969 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46908 * 55.00346 * 6 5 4 8 8 O 1.42894 * 109.47379 * 294.99832 * 6 5 4 9 9 C 1.52999 * 109.46806 * 174.99874 * 6 5 4 10 10 N 1.46900 * 109.47302 * 185.00310 * 9 6 5 11 11 C 1.46899 * 111.00368 * 180.02562 * 10 9 6 12 12 H 1.09000 * 110.43367 * 325.69151 * 11 10 9 13 13 C 1.54263 * 110.48783 * 88.24098 * 11 10 9 14 14 C 1.54086 * 106.49259 * 142.19834 * 13 11 10 15 15 C 1.54262 * 106.62429 * 0.16861 * 14 13 11 16 16 H 1.09007 * 110.59547 * 95.01170 * 15 14 13 17 17 C 1.50699 * 110.48926 * 217.60248 * 15 14 13 18 18 H 1.07995 * 119.99942 * 114.77572 * 17 15 14 19 19 C 1.37878 * 119.99926 * 294.77411 * 17 15 14 20 20 N 1.31516 * 120.00092 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00056 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46874 * 90.00065 * 21 19 17 23 23 H 1.48503 * 109.46800 * 210.00216 * 21 19 17 24 24 H 1.48496 * 109.46926 * 329.99800 * 21 19 17 25 25 C 1.54886 * 104.19370 * 336.28439 * 15 14 13 26 26 H 1.08997 * 109.47286 * 59.99983 * 1 2 3 27 27 H 1.09010 * 109.47076 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47201 * 299.99764 * 1 2 3 29 29 H 1.08997 * 109.46848 * 239.99919 * 2 1 3 30 30 H 1.08997 * 109.47286 * 120.00017 * 2 1 3 31 31 H 1.09004 * 109.47054 * 299.99711 * 4 3 2 32 32 H 1.09000 * 109.47187 * 59.99767 * 4 3 2 33 33 H 1.09004 * 109.46930 * 299.99773 * 5 4 3 34 34 H 1.09004 * 109.47059 * 59.99375 * 5 4 3 35 35 H 0.96706 * 113.99885 * 300.00147 * 8 6 5 36 36 H 1.09003 * 109.47170 * 304.99765 * 9 6 5 37 37 H 1.08997 * 109.47779 * 65.00081 * 9 6 5 38 38 H 1.00903 * 111.00346 * 56.03875 * 10 9 6 39 39 H 1.09002 * 110.02651 * 261.56947 * 13 11 10 40 40 H 1.08996 * 110.03582 * 22.99972 * 13 11 10 41 41 H 1.08997 * 110.11556 * 240.82554 * 14 13 11 42 42 H 1.09003 * 109.96952 * 119.43551 * 14 13 11 43 43 H 0.96999 * 120.00131 * 179.97438 * 20 19 17 44 44 H 1.09004 * 110.75607 * 279.62287 * 25 15 14 45 45 H 1.09000 * 110.91562 * 156.33409 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 6 5.3505 3.0592 0.0001 7 1 5.7592 2.5007 -0.8420 8 8 5.8704 2.5287 1.2209 9 6 5.7454 4.5320 -0.1249 10 7 7.2056 4.6391 -0.2454 11 6 7.6224 6.0424 -0.3671 12 1 6.8794 6.6131 -0.9242 13 6 7.8451 6.6624 1.0278 14 6 9.0662 7.5938 0.9026 15 6 9.5375 7.5089 -0.5638 16 1 9.1060 8.3183 -1.1528 17 6 11.0422 7.5489 -0.6373 18 1 11.5883 6.6895 -0.9970 19 6 11.7216 8.6829 -0.2454 20 7 11.0566 9.7293 0.1932 21 14 13.5868 8.7323 -0.3358 22 1 14.0044 9.2428 -1.6663 23 1 14.1102 9.6296 0.7254 24 1 14.1283 7.3637 -0.1384 25 6 9.0070 6.1389 -1.0545 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8340 0.9765 0.8892 32 1 3.8333 0.9767 -0.8908 33 1 3.4222 3.4225 -0.8895 34 1 3.4229 3.4214 0.8905 35 1 5.5485 2.9788 2.0140 36 1 5.2755 4.9603 -1.0103 37 1 5.4133 5.0738 0.7606 38 1 7.5454 4.0919 -1.0221 39 1 6.9662 7.2334 1.3271 40 1 8.0475 5.8781 1.7571 41 1 9.8611 7.2615 1.5702 42 1 8.7798 8.6175 1.1441 43 1 11.5346 10.5269 0.4692 44 1 9.6597 5.3310 -0.7237 45 1 8.9014 6.1285 -2.1393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578436466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:15 Heat of formation + Delta-G solvation = -126.564006 kcal Electronic energy + Delta-G solvation = -20730.063989 eV Core-core repulsion = 17553.249125 eV Total energy + Delta-G solvation = -3176.814864 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.87123 -38.00151 -37.08239 -34.01780 -32.79261 -31.99402 -30.78369 -28.06830 -27.89336 -25.55511 -23.58208 -23.13831 -22.52331 -21.54773 -19.37820 -18.86906 -17.01570 -16.82548 -16.40694 -16.26391 -15.84785 -14.97634 -14.69743 -14.63896 -14.33201 -14.27223 -13.88134 -13.34435 -12.84304 -12.70993 -12.29998 -12.25365 -12.06557 -11.93268 -11.62994 -11.43860 -11.30673 -11.02183 -10.91022 -10.79661 -10.55302 -10.35281 -10.20094 -9.95808 -9.88252 -9.77691 -9.47564 -9.05211 -8.67189 -8.32699 -8.03696 -5.95833 -3.97932 3.27254 3.33874 3.40542 3.44301 4.22107 4.47586 4.52014 4.64255 4.67920 4.77190 4.87402 4.99004 5.00719 5.16085 5.18443 5.27857 5.36276 5.43749 5.49349 5.55077 5.59206 5.67532 5.71605 5.78131 5.79340 6.00371 6.03568 6.33995 6.56948 6.69364 6.82767 6.89321 6.90883 7.03582 7.20849 7.40563 7.55303 7.61946 7.73574 7.80096 7.96657 8.07950 8.52449 9.05036 9.65646 11.14141 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.063375 B = 0.002466 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.707620 B =11349.595423 C =11457.935512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.394 6.394 4 C 0.067 3.933 5 C -0.150 4.150 6 C 0.114 3.886 7 H 0.096 0.904 8 O -0.549 6.549 9 C 0.029 3.971 10 N -0.674 5.674 11 C 0.079 3.921 12 H 0.037 0.963 13 C -0.113 4.113 14 C -0.096 4.096 15 C 0.051 3.949 16 H 0.028 0.972 17 C -0.511 4.511 18 H 0.055 0.945 19 C 0.060 3.940 20 N -0.891 5.891 21 Si 0.889 3.111 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.116 4.116 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.373 0.627 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.336 0.664 39 H 0.037 0.963 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.259 0.741 44 H 0.065 0.935 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.210 -16.088 -0.052 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.314 6.314 4 C -0.010 4.010 5 C -0.188 4.188 6 C 0.054 3.946 7 H 0.114 0.886 8 O -0.354 6.354 9 C -0.101 4.101 10 N -0.305 5.305 11 C -0.030 4.030 12 H 0.055 0.945 13 C -0.152 4.152 14 C -0.135 4.135 15 C 0.032 3.968 16 H 0.046 0.954 17 C -0.549 4.549 18 H 0.073 0.927 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.154 4.154 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.221 0.779 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.154 0.846 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.890 -16.165 0.291 24.113 hybrid contribution 0.539 0.568 -0.602 0.988 sum -17.352 -15.597 -0.311 23.333 Atomic orbital electron populations 1.21750 0.93804 1.02201 1.03130 1.22439 0.95523 0.83892 1.00085 1.87862 1.21590 1.26419 1.95497 1.22423 0.80651 0.97191 1.00716 1.22236 0.96738 0.95759 1.04105 1.21821 0.90413 0.93888 0.88450 0.88588 1.86588 1.72702 1.60860 1.15242 1.22662 0.90274 0.96013 1.01152 1.60523 1.09094 1.11511 1.49341 1.22530 0.96878 0.86326 0.97285 0.94511 1.22293 0.98642 0.98487 0.95762 1.22102 0.94119 0.96986 1.00282 1.19378 0.95225 0.90341 0.91872 0.95391 1.21163 0.91349 0.99459 1.42962 0.92688 1.24991 0.98068 0.95721 0.95302 1.69974 1.35147 1.03971 1.43862 0.86648 0.86185 0.77901 0.77582 1.20817 1.21327 1.19918 1.22747 0.93705 1.01648 0.97295 0.91879 0.91141 0.91856 0.93492 0.93404 0.92500 0.93448 0.90294 0.90638 0.77949 0.94866 0.90768 0.84600 0.94387 0.92079 0.93014 0.93063 0.93168 0.91607 0.93880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.44 6.66 37.16 0.25 0.69 16 3 O -0.39 -4.05 10.34 -35.23 -0.36 -4.42 16 4 C 0.07 0.61 5.84 37.16 0.22 0.83 16 5 C -0.15 -1.34 5.26 -26.73 -0.14 -1.49 16 6 C 0.11 1.16 3.14 -26.73 -0.08 1.08 16 7 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 8 O -0.55 -6.29 12.82 -35.23 -0.45 -6.74 16 9 C 0.03 0.35 5.18 -3.82 -0.02 0.33 16 10 N -0.67 -10.15 6.25 -104.98 -0.66 -10.80 16 11 C 0.08 1.41 3.17 -66.06 -0.21 1.20 16 12 H 0.04 0.66 7.85 -51.93 -0.41 0.25 16 13 C -0.11 -2.21 6.52 -25.50 -0.17 -2.37 16 14 C -0.10 -2.29 5.60 -25.50 -0.14 -2.44 16 15 C 0.05 1.28 2.72 -90.12 -0.25 1.03 16 16 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 17 C -0.51 -14.22 8.36 -34.44 -0.29 -14.51 16 18 H 0.05 1.51 7.77 -52.49 -0.41 1.11 16 19 C 0.06 1.71 5.35 -17.82 -0.10 1.61 16 20 N -0.89 -26.01 12.63 55.43 0.70 -25.31 16 21 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 C -0.12 -2.40 5.67 -24.74 -0.14 -2.55 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.32 8.14 -51.92 -0.42 -0.11 16 28 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.37 3.28 9.05 45.56 0.41 3.69 16 36 H 0.03 0.39 8.08 -51.93 -0.42 -0.03 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.34 4.80 8.44 -39.29 -0.33 4.47 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 41 H 0.05 1.32 7.83 -51.93 -0.41 0.91 16 42 H 0.05 1.29 8.06 -51.93 -0.42 0.87 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.07 1.40 8.05 -51.93 -0.42 0.99 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -30.37 361.80 -8.88 -39.25 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -7.85 Total: 3.15 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -0.69 Total: -17.15 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.04 Total: -36.12 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.82 Total: -11.16 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.37 -8.88 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578436466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.316 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds