Wall clock time and date at job start Mon Mar 30 2020 05:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47079 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.46969 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46908 * 55.00346 * 6 5 4 8 8 O 1.42894 * 109.47379 * 294.99832 * 6 5 4 9 9 C 1.52999 * 109.46806 * 174.99874 * 6 5 4 10 10 N 1.46900 * 109.47302 * 185.00310 * 9 6 5 11 11 C 1.46899 * 111.00368 * 180.02562 * 10 9 6 12 12 H 1.09000 * 110.43367 * 325.69151 * 11 10 9 13 13 C 1.54263 * 110.48783 * 88.24098 * 11 10 9 14 14 C 1.54086 * 106.49259 * 142.19834 * 13 11 10 15 15 C 1.54262 * 106.62429 * 0.16861 * 14 13 11 16 16 H 1.09007 * 110.59547 * 95.01170 * 15 14 13 17 17 C 1.50699 * 110.48926 * 217.60248 * 15 14 13 18 18 H 1.07995 * 119.99942 * 114.77572 * 17 15 14 19 19 C 1.37878 * 119.99926 * 294.77411 * 17 15 14 20 20 N 1.31516 * 120.00092 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00056 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46874 * 90.00065 * 21 19 17 23 23 H 1.48503 * 109.46800 * 210.00216 * 21 19 17 24 24 H 1.48496 * 109.46926 * 329.99800 * 21 19 17 25 25 C 1.54886 * 104.19370 * 336.28439 * 15 14 13 26 26 H 1.08997 * 109.47286 * 59.99983 * 1 2 3 27 27 H 1.09010 * 109.47076 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47201 * 299.99764 * 1 2 3 29 29 H 1.08997 * 109.46848 * 239.99919 * 2 1 3 30 30 H 1.08997 * 109.47286 * 120.00017 * 2 1 3 31 31 H 1.09004 * 109.47054 * 299.99711 * 4 3 2 32 32 H 1.09000 * 109.47187 * 59.99767 * 4 3 2 33 33 H 1.09004 * 109.46930 * 299.99773 * 5 4 3 34 34 H 1.09004 * 109.47059 * 59.99375 * 5 4 3 35 35 H 0.96706 * 113.99885 * 300.00147 * 8 6 5 36 36 H 1.09003 * 109.47170 * 304.99765 * 9 6 5 37 37 H 1.08997 * 109.47779 * 65.00081 * 9 6 5 38 38 H 1.00903 * 111.00346 * 56.03875 * 10 9 6 39 39 H 1.09002 * 110.02651 * 261.56947 * 13 11 10 40 40 H 1.08996 * 110.03582 * 22.99972 * 13 11 10 41 41 H 1.08997 * 110.11556 * 240.82554 * 14 13 11 42 42 H 1.09003 * 109.96952 * 119.43551 * 14 13 11 43 43 H 0.96999 * 120.00131 * 179.97438 * 20 19 17 44 44 H 1.09004 * 110.75607 * 279.62287 * 25 15 14 45 45 H 1.09000 * 110.91562 * 156.33409 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 6 5.3505 3.0592 0.0001 7 1 5.7592 2.5007 -0.8420 8 8 5.8704 2.5287 1.2209 9 6 5.7454 4.5320 -0.1249 10 7 7.2056 4.6391 -0.2454 11 6 7.6224 6.0424 -0.3671 12 1 6.8794 6.6131 -0.9242 13 6 7.8451 6.6624 1.0278 14 6 9.0662 7.5938 0.9026 15 6 9.5375 7.5089 -0.5638 16 1 9.1060 8.3183 -1.1528 17 6 11.0422 7.5489 -0.6373 18 1 11.5883 6.6895 -0.9970 19 6 11.7216 8.6829 -0.2454 20 7 11.0566 9.7293 0.1932 21 14 13.5868 8.7323 -0.3358 22 1 14.0044 9.2428 -1.6663 23 1 14.1102 9.6296 0.7254 24 1 14.1283 7.3637 -0.1384 25 6 9.0070 6.1389 -1.0545 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8340 0.9765 0.8892 32 1 3.8333 0.9767 -0.8908 33 1 3.4222 3.4225 -0.8895 34 1 3.4229 3.4214 0.8905 35 1 5.5485 2.9788 2.0140 36 1 5.2755 4.9603 -1.0103 37 1 5.4133 5.0738 0.7606 38 1 7.5454 4.0919 -1.0221 39 1 6.9662 7.2334 1.3271 40 1 8.0475 5.8781 1.7571 41 1 9.8611 7.2615 1.5702 42 1 8.7798 8.6175 1.1441 43 1 11.5346 10.5269 0.4692 44 1 9.6597 5.3310 -0.7237 45 1 8.9014 6.1285 -2.1393 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578436466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:15 Heat of formation + Delta-G solvation = -148.057990 kcal Electronic energy + Delta-G solvation = -20730.996038 eV Core-core repulsion = 17553.249125 eV Total energy + Delta-G solvation = -3177.746913 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.80799 -39.12408 -38.20003 -35.52998 -33.94903 -33.37245 -31.52795 -29.89056 -29.19756 -26.97516 -25.39991 -23.71353 -23.45982 -22.37053 -21.06490 -20.62544 -18.30714 -17.70999 -17.56280 -17.25792 -16.90825 -16.57653 -16.25611 -15.76169 -15.47048 -15.17501 -14.79389 -14.56689 -14.29592 -14.06059 -13.53956 -13.29630 -13.08172 -12.98913 -12.84467 -12.71742 -12.65111 -12.37982 -12.12708 -12.01475 -11.92544 -11.80609 -11.64692 -11.61761 -11.38162 -11.05506 -10.73845 -10.72303 -10.53732 -10.46969 -9.25432 -8.11516 -6.20700 1.40798 1.41659 1.52154 2.43917 2.59680 3.19434 3.26043 3.64933 3.83294 4.00029 4.04362 4.10588 4.15876 4.22073 4.26132 4.33934 4.41316 4.47274 4.49653 4.59932 4.68522 4.75184 4.80767 4.87252 4.90616 5.00158 5.02300 5.08479 5.13370 5.17103 5.22286 5.26625 5.30099 5.44433 5.50582 5.67647 5.91061 5.99521 6.23850 6.27376 6.41705 6.53951 6.90709 6.94004 7.46442 8.97893 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.063375 B = 0.002466 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.707620 B =11349.595423 C =11457.935512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.414 6.414 4 C 0.067 3.933 5 C -0.141 4.141 6 C 0.125 3.875 7 H 0.098 0.902 8 O -0.566 6.566 9 C 0.030 3.970 10 N -0.677 5.677 11 C 0.094 3.906 12 H 0.043 0.957 13 C -0.103 4.103 14 C -0.088 4.088 15 C 0.039 3.961 16 H -0.002 1.002 17 C -0.530 4.530 18 H 0.053 0.947 19 C 0.008 3.992 20 N -0.922 5.922 21 Si 0.954 3.046 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.268 1.268 25 C -0.106 4.106 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.384 0.616 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.343 0.657 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.259 0.741 44 H 0.059 0.941 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.945 -17.626 -0.313 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.334 6.334 4 C -0.009 4.009 5 C -0.179 4.179 6 C 0.065 3.935 7 H 0.116 0.884 8 O -0.372 6.372 9 C -0.100 4.100 10 N -0.309 5.309 11 C -0.015 4.015 12 H 0.061 0.939 13 C -0.141 4.141 14 C -0.127 4.127 15 C 0.020 3.980 16 H 0.016 0.984 17 C -0.568 4.568 18 H 0.071 0.929 19 C -0.190 4.190 20 N -0.561 5.561 21 Si 0.779 3.221 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.192 1.192 25 C -0.144 4.144 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.233 0.767 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.162 0.838 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.639 -17.723 0.028 25.720 hybrid contribution 0.740 1.033 -0.520 1.373 sum -17.899 -16.689 -0.492 24.478 Atomic orbital electron populations 1.21771 0.92906 1.03365 1.02665 1.22643 0.96351 0.82987 1.00749 1.87833 1.22017 1.27978 1.95615 1.22421 0.80419 0.97258 1.00850 1.22119 0.95671 0.95795 1.04357 1.21712 0.91098 0.92510 0.88197 0.88412 1.86562 1.73172 1.61399 1.16079 1.22736 0.88198 0.97437 1.01614 1.60426 1.11317 1.09376 1.49758 1.22228 0.95403 0.88288 0.95621 0.93865 1.22158 0.97032 0.97805 0.97087 1.21903 0.95327 0.96616 0.98830 1.19386 0.94136 0.91991 0.92471 0.98372 1.21548 0.93013 0.99490 1.42764 0.92887 1.25798 1.02742 0.95437 0.95026 1.70100 1.36867 1.04468 1.44684 0.85621 0.80609 0.78082 0.77755 1.20054 1.21015 1.19235 1.22565 0.95160 0.98507 0.98161 0.92296 0.89198 0.92331 0.92730 0.92818 0.92715 0.92969 0.90005 0.90418 0.76721 0.93880 0.90696 0.83838 0.92648 0.91650 0.95526 0.95510 0.93169 0.92215 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 71.98 0.74 -0.93 16 2 C 0.05 0.68 6.66 71.98 0.48 1.16 16 3 O -0.41 -7.92 10.34 -148.98 -1.54 -9.46 16 4 C 0.07 1.11 5.84 71.98 0.42 1.53 16 5 C -0.14 -2.22 5.26 30.59 0.16 -2.06 16 6 C 0.12 2.24 3.14 30.59 0.10 2.34 16 7 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 8 O -0.57 -11.75 12.82 -148.98 -1.91 -13.66 16 9 C 0.03 0.63 5.18 86.30 0.45 1.08 16 10 N -0.68 -18.81 6.25 -486.05 -3.04 -21.84 16 11 C 0.09 3.22 3.17 45.99 0.15 3.37 16 12 H 0.04 1.45 7.85 -2.39 -0.02 1.43 16 13 C -0.10 -3.88 6.52 31.39 0.20 -3.68 16 14 C -0.09 -4.28 5.60 31.39 0.18 -4.10 16 15 C 0.04 2.01 2.72 -10.47 -0.03 1.98 16 16 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 17 C -0.53 -29.96 8.36 25.60 0.21 -29.75 16 18 H 0.05 2.94 7.77 -2.91 -0.02 2.92 16 19 C 0.01 0.48 5.35 84.65 0.45 0.93 16 20 N -0.92 -55.04 12.63 21.45 0.27 -54.77 16 21 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 22 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 C -0.11 -4.33 5.67 31.88 0.18 -4.15 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.93 7.82 -2.38 -0.02 0.91 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.38 5.96 9.05 -74.05 -0.67 5.29 16 36 H 0.04 0.87 8.08 -2.39 -0.02 0.85 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.34 8.94 8.44 -89.69 -0.76 8.18 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 2.43 8.04 -2.39 -0.02 2.41 16 41 H 0.03 1.38 7.83 -2.39 -0.02 1.36 16 42 H 0.03 1.38 8.06 -2.39 -0.02 1.36 16 43 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 44 H 0.06 2.50 8.05 -2.39 -0.02 2.48 16 45 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -65.24 361.80 -0.99 -66.22 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -0.48 Total: 19.11 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 3.69 Total: -32.28 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -2.77 Total: -76.61 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -3.45 Total: -23.12 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.24 -0.99 -66.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578436466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.833 kcal (2) G-P(sol) polarization free energy of solvation -65.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds