Wall clock time and date at job start Mon Mar 30 2020 05:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47038 * 2 1 4 4 C 1.42903 * 113.99672 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46858 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46846 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47398 * 305.00335 * 6 5 4 8 8 O 1.42896 * 109.47231 * 65.00401 * 6 5 4 9 9 C 1.52997 * 109.47060 * 185.00166 * 6 5 4 10 10 N 1.46894 * 109.47515 * 180.02562 * 9 6 5 11 11 C 1.46900 * 111.00559 * 180.02562 * 10 9 6 12 12 H 1.09000 * 110.43312 * 325.70135 * 11 10 9 13 13 C 1.54264 * 110.48603 * 88.24061 * 11 10 9 14 14 C 1.54088 * 106.49428 * 142.20053 * 13 11 10 15 15 C 1.54277 * 106.61839 * 0.17340 * 14 13 11 16 16 H 1.08996 * 110.59429 * 95.01591 * 15 14 13 17 17 C 1.50696 * 110.48461 * 217.60057 * 15 14 13 18 18 H 1.07999 * 120.00231 * 114.77353 * 17 15 14 19 19 C 1.37880 * 120.00081 * 294.77914 * 17 15 14 20 20 N 1.31521 * 119.99821 * 180.02562 * 19 17 15 21 21 Si 1.86799 * 119.99974 * 359.97438 * 19 17 15 22 22 H 1.48499 * 109.47231 * 90.00520 * 21 19 17 23 23 H 1.48503 * 109.46929 * 210.00047 * 21 19 17 24 24 H 1.48499 * 109.47112 * 330.00162 * 21 19 17 25 25 C 1.54886 * 104.19652 * 336.28107 * 15 14 13 26 26 H 1.09000 * 109.47187 * 300.00122 * 1 2 3 27 27 H 1.08999 * 109.47475 * 59.99924 * 1 2 3 28 28 H 1.08999 * 109.47189 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47187 * 239.99878 * 2 1 3 30 30 H 1.08999 * 109.47049 * 120.00402 * 2 1 3 31 31 H 1.09002 * 109.47269 * 60.00199 * 4 3 2 32 32 H 1.09001 * 109.47412 * 299.99925 * 4 3 2 33 33 H 1.09002 * 109.46824 * 60.00164 * 5 4 3 34 34 H 1.08991 * 109.47210 * 300.00249 * 5 4 3 35 35 H 0.96708 * 114.00101 * 59.99127 * 8 6 5 36 36 H 1.09002 * 109.47153 * 300.00319 * 9 6 5 37 37 H 1.08998 * 109.47533 * 59.99948 * 9 6 5 38 38 H 1.00899 * 111.00176 * 303.95826 * 10 9 6 39 39 H 1.09000 * 110.03243 * 261.57566 * 13 11 10 40 40 H 1.08999 * 110.03043 * 23.00658 * 13 11 10 41 41 H 1.08999 * 110.11175 * 240.83474 * 14 13 11 42 42 H 1.09000 * 109.96842 * 119.43345 * 14 13 11 43 43 H 0.96999 * 119.99235 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.75710 * 279.62961 * 25 15 14 45 45 H 1.08996 * 110.91624 * 156.33163 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4600 -0.0006 5 6 3.8254 2.9384 -0.0012 6 6 5.3506 3.0591 -0.0012 7 1 5.7593 2.5005 0.8409 8 8 5.8704 2.5287 -1.2220 9 6 5.7456 4.5319 0.1240 10 7 7.2099 4.6480 0.1234 11 6 7.6269 6.0515 0.2430 12 1 6.9217 6.7032 -0.2726 13 6 7.7482 6.4540 1.7273 14 6 8.9701 7.3872 1.8290 15 6 9.5433 7.5207 0.4029 16 1 9.1498 8.4115 -0.0866 17 6 11.0492 7.5634 0.4416 18 1 11.6237 6.7647 -0.0038 19 6 11.6936 8.6220 1.0459 20 7 13.0078 8.6594 1.0792 21 14 10.7000 10.0037 1.8159 22 1 10.4244 9.6816 3.2391 23 1 11.4696 11.2712 1.7354 24 1 9.4162 10.1569 1.0854 25 6 9.0557 6.2427 -0.3237 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8332 0.9766 -0.8908 32 1 3.8340 0.9764 0.8892 33 1 3.4229 3.4221 0.8889 34 1 3.4222 3.4216 -0.8910 35 1 5.5485 2.9788 -2.0151 36 1 5.3368 5.0905 -0.7180 37 1 5.3491 4.9366 1.0552 38 1 7.6175 4.0864 0.8559 39 1 6.8475 6.9783 2.0467 40 1 7.9033 5.5681 2.3429 41 1 9.7182 6.9542 2.4930 42 1 8.6622 8.3646 2.2006 43 1 13.4611 9.4044 1.5040 44 1 9.6878 5.3908 -0.0730 45 1 9.0261 6.3957 -1.4024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578436467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:19 Heat of formation + Delta-G solvation = -120.725576 kcal Electronic energy + Delta-G solvation = -20800.857787 eV Core-core repulsion = 17624.296096 eV Total energy + Delta-G solvation = -3176.561691 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.95196 -38.17573 -37.27337 -34.11096 -32.82708 -32.07655 -30.87108 -28.52425 -28.04754 -25.91551 -23.36469 -23.15244 -22.51220 -21.63036 -19.84374 -19.09549 -17.05362 -16.89366 -16.62656 -16.48953 -15.79168 -15.21110 -14.99924 -14.67780 -14.26125 -14.11325 -13.79458 -13.37455 -12.87986 -12.76763 -12.55818 -12.45836 -12.26752 -12.16451 -11.94556 -11.48929 -11.45865 -11.33955 -10.96955 -10.93227 -10.76441 -10.37954 -10.15021 -9.98064 -9.95278 -9.89280 -9.64079 -9.33550 -8.92479 -8.51056 -8.04902 -6.02557 -4.00503 3.23706 3.30814 3.39445 3.41523 4.14895 4.45803 4.46289 4.59237 4.65249 4.73296 4.83982 4.91007 4.98154 5.10989 5.12538 5.22930 5.25838 5.36879 5.39826 5.43363 5.50067 5.55845 5.59195 5.65890 5.68799 5.75815 5.95560 6.02332 6.26871 6.40018 6.47494 6.60568 6.77185 6.85477 6.87979 6.97277 7.23854 7.36249 7.54435 7.62486 7.67925 7.84997 8.59900 9.02853 9.60800 11.10873 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.054892 B = 0.002626 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.965476 B =10660.676921 C =10964.132437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.394 6.394 4 C 0.066 3.934 5 C -0.149 4.149 6 C 0.113 3.887 7 H 0.096 0.904 8 O -0.548 6.548 9 C 0.027 3.973 10 N -0.672 5.672 11 C 0.079 3.921 12 H 0.072 0.928 13 C -0.148 4.148 14 C -0.127 4.127 15 C 0.009 3.991 16 H 0.030 0.970 17 C -0.505 4.505 18 H 0.074 0.926 19 C 0.068 3.932 20 N -0.904 5.904 21 Si 0.879 3.121 22 H -0.279 1.279 23 H -0.294 1.294 24 H -0.265 1.265 25 C -0.087 4.087 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.374 0.626 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.340 0.660 39 H 0.046 0.954 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.038 0.962 43 H 0.262 0.738 44 H 0.065 0.935 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.035 -14.235 -1.172 27.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.314 6.314 4 C -0.010 4.010 5 C -0.188 4.188 6 C 0.053 3.947 7 H 0.114 0.886 8 O -0.353 6.353 9 C -0.103 4.103 10 N -0.302 5.302 11 C -0.031 4.031 12 H 0.090 0.910 13 C -0.187 4.187 14 C -0.165 4.165 15 C -0.011 4.011 16 H 0.048 0.952 17 C -0.543 4.543 18 H 0.092 0.908 19 C -0.133 4.133 20 N -0.543 5.543 21 Si 0.708 3.292 22 H -0.205 1.205 23 H -0.221 1.221 24 H -0.190 1.190 25 C -0.126 4.126 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.221 0.779 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.159 0.841 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.647 -14.388 -1.391 26.867 hybrid contribution -0.810 1.239 1.289 1.963 sum -23.457 -13.149 -0.102 26.892 Atomic orbital electron populations 1.21748 0.93798 1.02222 1.03121 1.22441 0.95524 0.83864 1.00109 1.87859 1.21565 1.26454 1.95501 1.22421 0.80681 0.97153 1.00751 1.22225 0.96674 0.95813 1.04074 1.21820 0.90527 0.93788 0.88519 0.88603 1.86593 1.72664 1.60796 1.15214 1.22647 0.90517 0.96238 1.00871 1.60554 1.06251 1.09947 1.53475 1.22608 0.98585 0.87231 0.94674 0.90988 1.22882 0.98802 0.99827 0.97191 1.22604 0.95552 0.96883 1.01500 1.19978 0.96572 0.93836 0.90667 0.95192 1.21057 0.88941 1.07727 1.36602 0.90813 1.25020 0.94658 0.97803 0.95804 1.69917 1.07488 1.31873 1.44979 0.86899 0.80445 0.81815 0.80033 1.20499 1.22071 1.19030 1.22343 0.92370 0.99192 0.98654 0.91892 0.91855 0.91122 0.93383 0.93477 0.92473 0.93434 0.90315 0.90641 0.77925 0.90883 0.94694 0.84120 0.93511 0.92703 0.91482 0.94309 0.92811 0.91592 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.43 6.66 37.16 0.25 0.67 16 3 O -0.39 -3.92 10.34 -35.23 -0.36 -4.29 16 4 C 0.07 0.59 5.84 37.16 0.22 0.80 16 5 C -0.15 -1.26 5.26 -26.73 -0.14 -1.40 16 6 C 0.11 1.08 3.17 -26.73 -0.08 1.00 16 7 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 8 O -0.55 -5.92 12.74 -35.23 -0.45 -6.37 16 9 C 0.03 0.30 5.20 -3.83 -0.02 0.28 16 10 N -0.67 -9.40 6.21 -104.98 -0.65 -10.05 16 11 C 0.08 1.29 3.17 -66.06 -0.21 1.08 16 12 H 0.07 1.15 7.85 -51.93 -0.41 0.74 16 13 C -0.15 -2.49 6.49 -25.50 -0.17 -2.66 16 14 C -0.13 -2.69 4.89 -25.49 -0.12 -2.82 16 15 C 0.01 0.21 2.28 -90.11 -0.21 0.00 16 16 H 0.03 0.72 7.06 -51.93 -0.37 0.36 16 17 C -0.51 -14.25 8.94 -34.44 -0.31 -14.56 16 18 H 0.07 2.26 8.01 -52.49 -0.42 1.84 16 19 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 20 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 21 Si 0.88 21.96 24.88 -169.99 -4.23 17.73 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.27 -6.35 6.42 56.52 0.36 -5.99 16 25 C -0.09 -1.75 5.97 -24.74 -0.15 -1.90 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.51 7.82 -51.93 -0.41 0.10 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.37 3.03 9.05 45.56 0.41 3.44 16 36 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.34 4.70 8.11 -39.29 -0.32 4.38 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.86 7.55 -51.93 -0.39 0.47 16 41 H 0.07 1.52 7.83 -51.93 -0.41 1.11 16 42 H 0.04 0.82 6.05 -51.93 -0.31 0.51 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.07 1.39 8.05 -51.93 -0.42 0.97 16 45 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 353.83 15.07 5.33 5.33 Total: -1.00 -31.37 353.83 -7.95 -39.32 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.70 Total: 3.63 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -0.66 Total: -18.16 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.12 Total: -37.19 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.81 Total: -10.65 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.23 Total: 17.73 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.37 -7.95 -39.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578436467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.409 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds