Wall clock time and date at job start Mon Mar 30 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47038 * 2 1 4 4 C 1.42903 * 113.99672 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46858 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46846 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47398 * 305.00335 * 6 5 4 8 8 O 1.42896 * 109.47231 * 65.00401 * 6 5 4 9 9 C 1.52997 * 109.47060 * 185.00166 * 6 5 4 10 10 N 1.46894 * 109.47515 * 180.02562 * 9 6 5 11 11 C 1.46900 * 111.00559 * 180.02562 * 10 9 6 12 12 H 1.09000 * 110.43312 * 325.70135 * 11 10 9 13 13 C 1.54264 * 110.48603 * 88.24061 * 11 10 9 14 14 C 1.54088 * 106.49428 * 142.20053 * 13 11 10 15 15 C 1.54277 * 106.61839 * 0.17340 * 14 13 11 16 16 H 1.08996 * 110.59429 * 95.01591 * 15 14 13 17 17 C 1.50696 * 110.48461 * 217.60057 * 15 14 13 18 18 H 1.07999 * 120.00231 * 114.77353 * 17 15 14 19 19 C 1.37880 * 120.00081 * 294.77914 * 17 15 14 20 20 N 1.31521 * 119.99821 * 180.02562 * 19 17 15 21 21 Si 1.86799 * 119.99974 * 359.97438 * 19 17 15 22 22 H 1.48499 * 109.47231 * 90.00520 * 21 19 17 23 23 H 1.48503 * 109.46929 * 210.00047 * 21 19 17 24 24 H 1.48499 * 109.47112 * 330.00162 * 21 19 17 25 25 C 1.54886 * 104.19652 * 336.28107 * 15 14 13 26 26 H 1.09000 * 109.47187 * 300.00122 * 1 2 3 27 27 H 1.08999 * 109.47475 * 59.99924 * 1 2 3 28 28 H 1.08999 * 109.47189 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47187 * 239.99878 * 2 1 3 30 30 H 1.08999 * 109.47049 * 120.00402 * 2 1 3 31 31 H 1.09002 * 109.47269 * 60.00199 * 4 3 2 32 32 H 1.09001 * 109.47412 * 299.99925 * 4 3 2 33 33 H 1.09002 * 109.46824 * 60.00164 * 5 4 3 34 34 H 1.08991 * 109.47210 * 300.00249 * 5 4 3 35 35 H 0.96708 * 114.00101 * 59.99127 * 8 6 5 36 36 H 1.09002 * 109.47153 * 300.00319 * 9 6 5 37 37 H 1.08998 * 109.47533 * 59.99948 * 9 6 5 38 38 H 1.00899 * 111.00176 * 303.95826 * 10 9 6 39 39 H 1.09000 * 110.03243 * 261.57566 * 13 11 10 40 40 H 1.08999 * 110.03043 * 23.00658 * 13 11 10 41 41 H 1.08999 * 110.11175 * 240.83474 * 14 13 11 42 42 H 1.09000 * 109.96842 * 119.43345 * 14 13 11 43 43 H 0.96999 * 119.99235 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.75710 * 279.62961 * 25 15 14 45 45 H 1.08996 * 110.91624 * 156.33163 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4600 -0.0006 5 6 3.8254 2.9384 -0.0012 6 6 5.3506 3.0591 -0.0012 7 1 5.7593 2.5005 0.8409 8 8 5.8704 2.5287 -1.2220 9 6 5.7456 4.5319 0.1240 10 7 7.2099 4.6480 0.1234 11 6 7.6269 6.0515 0.2430 12 1 6.9217 6.7032 -0.2726 13 6 7.7482 6.4540 1.7273 14 6 8.9701 7.3872 1.8290 15 6 9.5433 7.5207 0.4029 16 1 9.1498 8.4115 -0.0866 17 6 11.0492 7.5634 0.4416 18 1 11.6237 6.7647 -0.0038 19 6 11.6936 8.6220 1.0459 20 7 13.0078 8.6594 1.0792 21 14 10.7000 10.0037 1.8159 22 1 10.4244 9.6816 3.2391 23 1 11.4696 11.2712 1.7354 24 1 9.4162 10.1569 1.0854 25 6 9.0557 6.2427 -0.3237 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8332 0.9766 -0.8908 32 1 3.8340 0.9764 0.8892 33 1 3.4229 3.4221 0.8889 34 1 3.4222 3.4216 -0.8910 35 1 5.5485 2.9788 -2.0151 36 1 5.3368 5.0905 -0.7180 37 1 5.3491 4.9366 1.0552 38 1 7.6175 4.0864 0.8559 39 1 6.8475 6.9783 2.0467 40 1 7.9033 5.5681 2.3429 41 1 9.7182 6.9542 2.4930 42 1 8.6622 8.3646 2.2006 43 1 13.4611 9.4044 1.5040 44 1 9.6878 5.3908 -0.0730 45 1 9.0261 6.3957 -1.4024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578436467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:18 Heat of formation + Delta-G solvation = -144.709072 kcal Electronic energy + Delta-G solvation = -20801.897789 eV Core-core repulsion = 17624.296096 eV Total energy + Delta-G solvation = -3177.601693 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.89892 -39.21254 -38.23261 -35.53295 -34.07795 -33.41405 -31.58387 -30.11767 -29.38063 -27.17930 -25.05712 -23.71137 -23.40949 -22.39512 -21.22031 -20.91062 -18.70692 -17.72848 -17.58576 -17.33003 -16.71357 -16.51574 -16.46842 -15.58558 -15.41933 -15.15538 -14.88670 -14.72871 -14.25580 -14.01613 -14.00997 -13.47530 -13.26795 -13.04078 -12.86575 -12.68856 -12.63150 -12.35969 -12.08326 -12.01830 -11.92488 -11.80821 -11.65933 -11.56141 -11.48967 -11.26516 -10.95526 -10.74012 -10.70445 -10.54050 -9.16311 -8.27515 -6.30302 1.32594 1.35671 1.46343 2.35346 2.59523 3.07241 3.25041 3.67171 3.84292 3.95620 3.98354 4.05420 4.12898 4.15570 4.21489 4.27217 4.40140 4.47366 4.49541 4.60348 4.62323 4.72742 4.74288 4.81350 4.87028 4.91108 4.94104 5.01633 5.04526 5.08876 5.09208 5.22699 5.25605 5.27376 5.37137 5.53355 5.66304 5.83292 6.21336 6.26746 6.36199 6.52480 6.77011 6.95785 7.34630 8.89648 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.054892 B = 0.002626 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.965476 B =10660.676921 C =10964.132437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.413 6.413 4 C 0.066 3.934 5 C -0.140 4.140 6 C 0.122 3.878 7 H 0.095 0.905 8 O -0.566 6.566 9 C 0.030 3.970 10 N -0.679 5.679 11 C 0.095 3.905 12 H 0.086 0.914 13 C -0.138 4.138 14 C -0.126 4.126 15 C 0.002 3.998 16 H 0.029 0.971 17 C -0.512 4.512 18 H 0.028 0.972 19 C 0.007 3.993 20 N -0.954 5.954 21 Si 0.945 3.055 22 H -0.266 1.266 23 H -0.294 1.294 24 H -0.244 1.244 25 C -0.086 4.086 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.384 0.616 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.341 0.659 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.264 0.736 44 H 0.046 0.954 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.320 -14.207 -0.514 29.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.334 6.334 4 C -0.011 4.011 5 C -0.178 4.178 6 C 0.062 3.938 7 H 0.112 0.888 8 O -0.373 6.373 9 C -0.100 4.100 10 N -0.309 5.309 11 C -0.015 4.015 12 H 0.104 0.896 13 C -0.177 4.177 14 C -0.165 4.165 15 C -0.017 4.017 16 H 0.047 0.953 17 C -0.550 4.550 18 H 0.047 0.953 19 C -0.189 4.189 20 N -0.595 5.595 21 Si 0.770 3.230 22 H -0.192 1.192 23 H -0.221 1.221 24 H -0.167 1.167 25 C -0.124 4.124 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.233 0.767 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.160 0.840 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.964 -14.384 -0.746 29.692 hybrid contribution 0.283 1.115 1.001 1.525 sum -25.682 -13.269 0.255 28.908 Atomic orbital electron populations 1.21767 0.92884 1.03356 1.02689 1.22639 0.96362 0.83019 1.00711 1.87830 1.22004 1.27922 1.95607 1.22431 0.80418 0.97448 1.00759 1.22107 0.95649 0.95632 1.04427 1.21737 0.91153 0.92818 0.88106 0.88760 1.86569 1.73163 1.61420 1.16108 1.22707 0.88270 0.97285 1.01713 1.60439 1.08459 1.08309 1.53731 1.22334 0.96119 0.89005 0.94082 0.89620 1.22823 0.97583 0.99541 0.97776 1.22450 0.96903 0.98197 0.98914 1.19960 0.93229 0.95433 0.93072 0.95267 1.21381 0.91754 1.06300 1.35532 0.95336 1.25937 0.95648 1.00797 0.96555 1.70078 1.09594 1.33134 1.46717 0.85835 0.79517 0.77915 0.79710 1.19155 1.22122 1.16727 1.22231 0.94930 0.96835 0.98412 0.92284 0.92276 0.89249 0.92846 0.92804 0.92791 0.93129 0.89927 0.90272 0.76694 0.90223 0.93553 0.83987 0.90814 0.91440 0.93759 0.93853 0.92725 0.93541 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 71.98 0.74 -0.85 16 2 C 0.05 0.66 6.66 71.98 0.48 1.13 16 3 O -0.41 -7.58 10.34 -148.98 -1.54 -9.12 16 4 C 0.07 1.05 5.84 71.98 0.42 1.47 16 5 C -0.14 -2.01 5.26 30.60 0.16 -1.85 16 6 C 0.12 2.01 3.17 30.59 0.10 2.11 16 7 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 8 O -0.57 -11.12 12.74 -148.98 -1.90 -13.02 16 9 C 0.03 0.55 5.20 86.30 0.45 1.00 16 10 N -0.68 -17.21 6.21 -486.06 -3.02 -20.23 16 11 C 0.09 2.84 3.17 45.99 0.15 2.98 16 12 H 0.09 2.39 7.85 -2.39 -0.02 2.37 16 13 C -0.14 -4.18 6.49 31.39 0.20 -3.98 16 14 C -0.13 -5.12 4.89 31.40 0.15 -4.96 16 15 C 0.00 0.11 2.28 -10.46 -0.02 0.08 16 16 H 0.03 1.36 7.06 -2.39 -0.02 1.35 16 17 C -0.51 -29.81 8.94 25.60 0.23 -29.59 16 18 H 0.03 1.85 8.01 -2.91 -0.02 1.83 16 19 C 0.01 0.40 5.46 84.65 0.46 0.87 16 20 N -0.95 -60.99 13.96 21.45 0.30 -60.69 16 21 Si 0.95 45.11 24.88 68.60 1.71 46.82 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.24 -10.69 6.42 99.48 0.64 -10.05 16 25 C -0.09 -3.40 5.97 31.88 0.19 -3.21 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.88 7.82 -2.39 -0.02 0.86 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.38 5.46 9.05 -74.05 -0.67 4.79 16 36 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 37 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 38 H 0.34 8.63 8.11 -89.70 -0.73 7.90 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 1.89 7.55 -2.39 -0.02 1.87 16 41 H 0.04 1.97 7.83 -2.39 -0.02 1.95 16 42 H 0.04 1.70 6.05 -2.39 -0.01 1.68 16 43 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 44 H 0.05 1.99 8.05 -2.39 -0.02 1.97 16 45 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -69.22 353.83 -1.26 -70.48 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -0.52 Total: 20.54 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 3.71 Total: -34.78 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -2.72 Total: -80.92 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -3.44 Total: -22.14 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.71 Total: 46.82 kcal Total: -69.22 -1.26 -70.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578436467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.226 kcal (2) G-P(sol) polarization free energy of solvation -69.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds