Wall clock time and date at job start Mon Mar 30 2020 06:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42894 * 114.00735 * 2 1 4 4 C 1.53003 * 109.47627 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47185 * 184.99843 * 4 3 2 6 6 C 1.52997 * 109.46860 * 304.99800 * 4 3 2 7 7 C 1.52999 * 109.47120 * 184.99724 * 6 4 3 8 8 C 1.53179 * 109.54252 * 65.17994 * 7 6 4 9 9 C 1.53280 * 109.06328 * 176.85306 * 8 7 6 10 10 O 1.42901 * 109.46155 * 302.44168 * 9 8 7 11 11 C 1.42903 * 114.09356 * 61.15994 * 10 9 8 12 12 C 1.53091 * 109.41633 * 298.84001 * 11 10 9 13 13 N 1.46895 * 109.47119 * 64.99920 * 4 3 2 14 14 C 1.46895 * 111.00330 * 85.00021 * 13 4 3 15 15 C 1.52999 * 109.47369 * 180.02562 * 14 13 4 16 16 C 1.50707 * 109.47217 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99860 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99838 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00226 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46824 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46961 * 119.99517 * 20 18 16 23 23 H 1.48496 * 109.47196 * 239.99832 * 20 18 16 24 24 H 1.08992 * 109.47875 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46913 * 300.00506 * 1 2 3 26 26 H 1.09006 * 109.46716 * 59.99857 * 1 2 3 27 27 H 1.08994 * 109.46958 * 59.99490 * 3 2 1 28 28 H 1.09000 * 109.46967 * 299.99733 * 3 2 1 29 29 H 1.09006 * 109.47338 * 65.00187 * 6 4 3 30 30 H 1.08998 * 109.47287 * 305.00185 * 6 4 3 31 31 H 1.09002 * 109.54301 * 305.00171 * 7 6 4 32 32 H 1.09006 * 109.52033 * 296.84410 * 8 7 6 33 33 H 1.09002 * 109.52377 * 57.02479 * 8 7 6 34 34 H 1.09007 * 109.45633 * 182.44534 * 9 8 7 35 35 H 1.09003 * 109.46692 * 62.44798 * 9 8 7 36 36 H 1.09000 * 109.47917 * 178.85973 * 11 10 9 37 37 H 1.09000 * 109.49157 * 58.82974 * 11 10 9 38 38 H 1.09004 * 109.52607 * 297.70481 * 12 11 10 39 39 H 1.08999 * 109.57497 * 177.54830 * 12 11 10 40 40 H 1.00905 * 111.00022 * 321.04458 * 13 4 3 41 41 H 1.09001 * 109.47453 * 300.00236 * 14 13 4 42 42 H 1.09003 * 109.46749 * 59.99941 * 14 13 4 43 43 H 1.08997 * 109.46848 * 299.99893 * 15 14 13 44 44 H 1.08995 * 109.47508 * 59.99806 * 15 14 13 45 45 H 0.97005 * 120.00003 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.9787 2.1763 0.0889 6 6 3.9790 0.3192 1.1807 7 6 5.5071 0.3003 1.2537 8 6 6.0224 1.7072 1.5720 9 6 7.5473 1.6602 1.7204 10 8 7.8976 0.7260 2.7434 11 6 7.4812 -0.6147 2.4765 12 6 5.9555 -0.6601 2.3596 13 7 3.9769 0.5625 -1.2561 14 6 4.1190 1.5661 -2.3193 15 6 4.5784 0.8819 -3.6084 16 6 4.7248 1.9116 -4.6991 17 1 4.5111 2.9501 -4.4934 18 6 5.1315 1.5280 -5.9593 19 7 5.3923 0.2634 -6.2096 20 14 5.3123 2.8042 -7.3114 21 1 4.9609 4.1444 -6.7771 22 1 6.7159 2.8164 -7.7960 23 1 4.4033 2.4661 -8.4358 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 0.8899 28 1 1.6888 1.8462 -0.8900 29 1 3.6091 -0.6973 1.0456 30 1 3.5761 0.7326 2.1053 31 1 5.9138 -0.0293 0.2975 32 1 5.7537 2.3854 0.7621 33 1 5.5766 2.0563 2.5035 34 1 7.9165 2.6498 1.9899 35 1 7.9947 1.3501 0.7761 36 1 7.8028 -1.2641 3.2907 37 1 7.9276 -0.9550 1.5421 38 1 5.5084 -0.3588 3.3070 39 1 5.6381 -1.6732 2.1129 40 1 3.3465 -0.1740 -1.5360 41 1 3.1591 2.0537 -2.4895 42 1 4.8567 2.3106 -2.0199 43 1 5.5382 0.3941 -3.4386 44 1 3.8405 0.1376 -3.9077 45 1 5.6781 -0.0066 -7.0963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595034901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:20 Heat of formation + Delta-G solvation = -120.904557 kcal Electronic energy + Delta-G solvation = -21812.159710 eV Core-core repulsion = 18635.590258 eV Total energy + Delta-G solvation = -3176.569452 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.49749 -38.32547 -36.20484 -34.40704 -32.89098 -31.06229 -30.77963 -27.96072 -27.48560 -25.81168 -24.05018 -23.55775 -22.90850 -20.60135 -20.31717 -19.64634 -16.56164 -16.30231 -16.10406 -15.92181 -15.77088 -15.39380 -14.85688 -14.55985 -14.48714 -14.10937 -13.97201 -13.42606 -13.09731 -12.69547 -12.38369 -12.33737 -12.11093 -11.80909 -11.54941 -11.28827 -11.24112 -11.11759 -10.95898 -10.91605 -10.63778 -10.49379 -10.16034 -10.08783 -9.97687 -9.64643 -9.39639 -9.31999 -9.11237 -8.35151 -7.72739 -5.99381 -4.01898 3.30656 3.38120 3.41740 3.79073 3.94220 4.44174 4.70238 4.78587 4.95780 4.98263 5.09505 5.16226 5.20894 5.28182 5.36605 5.37688 5.39466 5.45408 5.48489 5.58469 5.61790 5.64604 5.73269 5.83531 5.90112 5.93648 6.08164 6.11780 6.18040 6.24663 6.38502 6.43054 6.52119 6.71915 6.99659 7.12882 7.25201 7.55005 7.76911 7.85538 8.02321 8.12043 8.44760 9.05822 9.61921 11.12029 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.004850 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.205662 B = 5771.515035 C = 7359.634747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.029 3.971 4 C 0.089 3.911 5 H 0.086 0.914 6 C -0.091 4.091 7 C -0.085 4.085 8 C -0.149 4.149 9 C 0.060 3.940 10 O -0.389 6.389 11 C 0.060 3.940 12 C -0.149 4.149 13 N -0.679 5.679 14 C 0.066 3.934 15 C 0.026 3.974 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.084 0.916 25 H 0.036 0.964 26 H 0.039 0.961 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.345 0.655 41 H 0.011 0.989 42 H 0.056 0.944 43 H 0.025 0.975 44 H 0.013 0.987 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.782 0.084 17.844 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C -0.049 4.049 4 C -0.022 4.022 5 H 0.104 0.896 6 C -0.129 4.129 7 C -0.103 4.103 8 C -0.186 4.186 9 C -0.017 4.017 10 O -0.308 6.308 11 C -0.016 4.016 12 C -0.187 4.187 13 N -0.310 5.310 14 C -0.063 4.063 15 C -0.011 4.011 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.102 0.898 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.164 0.836 41 H 0.030 0.970 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.031 0.969 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.840 -0.130 18.032 18.255 hybrid contribution -1.376 1.079 -1.356 2.213 sum -4.216 0.949 16.676 17.227 Atomic orbital electron populations 1.22708 0.81538 1.02522 0.99654 1.87866 1.19220 1.27764 1.95290 1.23373 0.96724 0.84873 0.99973 1.21754 0.89241 0.98727 0.92496 0.89633 1.21436 0.94611 1.00878 0.95968 1.21144 0.95853 0.94093 0.99260 1.22285 0.96150 0.98302 1.01890 1.22619 0.94802 0.92919 0.91358 1.87874 1.79439 1.17950 1.45545 1.22562 0.94192 0.83788 1.01104 1.22235 0.96335 1.00503 0.99626 1.60627 1.53761 1.13589 1.03050 1.22180 0.97856 0.93798 0.92422 1.19049 0.97074 0.95680 0.89335 1.21215 1.45362 0.94170 0.95186 0.92819 1.24996 0.95486 0.95196 0.98651 1.69988 1.46327 1.15284 1.21600 0.86558 0.77726 0.81783 0.82050 1.19812 1.20963 1.21063 0.89764 0.94537 0.94191 0.93677 0.93243 0.91100 0.92848 0.88969 0.90658 0.91895 0.89378 0.92830 0.89469 0.93050 0.91766 0.91031 0.83619 0.97040 0.92581 0.95688 0.96864 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.28 9.29 -35.23 -0.33 -5.61 16 3 C 0.03 0.38 5.61 37.16 0.21 0.59 16 4 C 0.09 1.25 2.28 -67.72 -0.15 1.09 16 5 H 0.09 1.18 6.08 -51.93 -0.32 0.87 16 6 C -0.09 -1.15 4.08 -26.73 -0.11 -1.26 16 7 C -0.09 -1.08 2.21 -90.44 -0.20 -1.28 16 8 C -0.15 -1.78 5.12 -26.49 -0.14 -1.92 16 9 C 0.06 0.72 6.85 37.30 0.26 0.98 16 10 O -0.39 -5.13 10.77 -35.23 -0.38 -5.51 16 11 C 0.06 0.68 6.84 37.20 0.25 0.94 16 12 C -0.15 -1.67 5.42 -26.59 -0.14 -1.82 16 13 N -0.68 -11.85 5.62 -106.73 -0.60 -12.45 16 14 C 0.07 1.35 5.42 -3.83 -0.02 1.33 16 15 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 16 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 20 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.70 7.35 -51.93 -0.38 0.32 16 29 H 0.07 0.97 7.73 -51.93 -0.40 0.57 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.40 7.62 -51.93 -0.40 1.00 16 32 H 0.07 0.94 6.63 -51.93 -0.34 0.59 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.94 8.14 -51.92 -0.42 0.51 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.34 6.31 7.94 -39.29 -0.31 6.00 16 41 H 0.01 0.23 7.36 -51.93 -0.38 -0.15 16 42 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 43 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -30.40 353.29 -8.17 -38.57 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -8.41 Total: 2.12 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 0.51 Total: -12.84 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.14 Total: -38.71 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.71 Total: -11.12 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.40 -8.17 -38.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595034901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.331 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds