Wall clock time and date at job start Mon Mar 30 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42894 * 114.00735 * 2 1 4 4 C 1.53003 * 109.47627 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47185 * 184.99843 * 4 3 2 6 6 C 1.52997 * 109.46860 * 304.99800 * 4 3 2 7 7 C 1.52999 * 109.47120 * 184.99724 * 6 4 3 8 8 C 1.53179 * 109.54252 * 65.17994 * 7 6 4 9 9 C 1.53280 * 109.06328 * 176.85306 * 8 7 6 10 10 O 1.42901 * 109.46155 * 302.44168 * 9 8 7 11 11 C 1.42903 * 114.09356 * 61.15994 * 10 9 8 12 12 C 1.53091 * 109.41633 * 298.84001 * 11 10 9 13 13 N 1.46895 * 109.47119 * 64.99920 * 4 3 2 14 14 C 1.46895 * 111.00330 * 85.00021 * 13 4 3 15 15 C 1.52999 * 109.47369 * 180.02562 * 14 13 4 16 16 C 1.50707 * 109.47217 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99860 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99838 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00226 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46824 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46961 * 119.99517 * 20 18 16 23 23 H 1.48496 * 109.47196 * 239.99832 * 20 18 16 24 24 H 1.08992 * 109.47875 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46913 * 300.00506 * 1 2 3 26 26 H 1.09006 * 109.46716 * 59.99857 * 1 2 3 27 27 H 1.08994 * 109.46958 * 59.99490 * 3 2 1 28 28 H 1.09000 * 109.46967 * 299.99733 * 3 2 1 29 29 H 1.09006 * 109.47338 * 65.00187 * 6 4 3 30 30 H 1.08998 * 109.47287 * 305.00185 * 6 4 3 31 31 H 1.09002 * 109.54301 * 305.00171 * 7 6 4 32 32 H 1.09006 * 109.52033 * 296.84410 * 8 7 6 33 33 H 1.09002 * 109.52377 * 57.02479 * 8 7 6 34 34 H 1.09007 * 109.45633 * 182.44534 * 9 8 7 35 35 H 1.09003 * 109.46692 * 62.44798 * 9 8 7 36 36 H 1.09000 * 109.47917 * 178.85973 * 11 10 9 37 37 H 1.09000 * 109.49157 * 58.82974 * 11 10 9 38 38 H 1.09004 * 109.52607 * 297.70481 * 12 11 10 39 39 H 1.08999 * 109.57497 * 177.54830 * 12 11 10 40 40 H 1.00905 * 111.00022 * 321.04458 * 13 4 3 41 41 H 1.09001 * 109.47453 * 300.00236 * 14 13 4 42 42 H 1.09003 * 109.46749 * 59.99941 * 14 13 4 43 43 H 1.08997 * 109.46848 * 299.99893 * 15 14 13 44 44 H 1.08995 * 109.47508 * 59.99806 * 15 14 13 45 45 H 0.97005 * 120.00003 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.9787 2.1763 0.0889 6 6 3.9790 0.3192 1.1807 7 6 5.5071 0.3003 1.2537 8 6 6.0224 1.7072 1.5720 9 6 7.5473 1.6602 1.7204 10 8 7.8976 0.7260 2.7434 11 6 7.4812 -0.6147 2.4765 12 6 5.9555 -0.6601 2.3596 13 7 3.9769 0.5625 -1.2561 14 6 4.1190 1.5661 -2.3193 15 6 4.5784 0.8819 -3.6084 16 6 4.7248 1.9116 -4.6991 17 1 4.5111 2.9501 -4.4934 18 6 5.1315 1.5280 -5.9593 19 7 5.3923 0.2634 -6.2096 20 14 5.3123 2.8042 -7.3114 21 1 4.9609 4.1444 -6.7771 22 1 6.7159 2.8164 -7.7960 23 1 4.4033 2.4661 -8.4358 24 1 -0.3634 -1.0275 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 0.8899 28 1 1.6888 1.8462 -0.8900 29 1 3.6091 -0.6973 1.0456 30 1 3.5761 0.7326 2.1053 31 1 5.9138 -0.0293 0.2975 32 1 5.7537 2.3854 0.7621 33 1 5.5766 2.0563 2.5035 34 1 7.9165 2.6498 1.9899 35 1 7.9947 1.3501 0.7761 36 1 7.8028 -1.2641 3.2907 37 1 7.9276 -0.9550 1.5421 38 1 5.5084 -0.3588 3.3070 39 1 5.6381 -1.6732 2.1129 40 1 3.3465 -0.1740 -1.5360 41 1 3.1591 2.0537 -2.4895 42 1 4.8567 2.3106 -2.0199 43 1 5.5382 0.3941 -3.4386 44 1 3.8405 0.1376 -3.9077 45 1 5.6781 -0.0066 -7.0963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595034901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:19 Heat of formation + Delta-G solvation = -140.957492 kcal Electronic energy + Delta-G solvation = -21813.029270 eV Core-core repulsion = 18635.590258 eV Total energy + Delta-G solvation = -3177.439012 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.51059 -39.38849 -37.41466 -35.87723 -34.69682 -32.43735 -31.90402 -29.64175 -28.43742 -26.81712 -25.90985 -24.52039 -24.00710 -22.40510 -21.47069 -20.69145 -18.52379 -17.44873 -17.21488 -16.92734 -16.81352 -16.63585 -16.36533 -15.90940 -15.52102 -15.41030 -15.25347 -14.78451 -14.36015 -14.19538 -13.73584 -13.46340 -13.18867 -13.17465 -12.88428 -12.79762 -12.72075 -12.37544 -12.24393 -12.20821 -12.00998 -11.92730 -11.66974 -11.37868 -11.20628 -11.10789 -11.00164 -10.62387 -10.56207 -10.36112 -9.15798 -8.20291 -6.31776 1.39681 1.40110 1.53253 2.40041 2.81438 3.02037 3.13327 3.48469 3.70007 3.91844 3.99181 4.15203 4.17572 4.24770 4.34358 4.39747 4.44232 4.50907 4.53170 4.57017 4.63494 4.64325 4.68670 4.81748 4.83367 4.85697 4.90961 4.98740 5.08631 5.10850 5.16921 5.21761 5.29349 5.41869 5.48702 5.67219 5.70064 5.81083 6.13784 6.20504 6.30489 6.38183 6.58853 6.86354 7.37729 8.92121 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.004850 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.205662 B = 5771.515035 C = 7359.634747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.033 3.967 4 C 0.088 3.912 5 H 0.091 0.909 6 C -0.080 4.080 7 C -0.084 4.084 8 C -0.143 4.143 9 C 0.057 3.943 10 O -0.401 6.401 11 C 0.056 3.944 12 C -0.143 4.143 13 N -0.682 5.682 14 C 0.087 3.913 15 C 0.034 3.966 16 C -0.542 4.542 17 H 0.060 0.940 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.966 3.034 21 H -0.261 1.261 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.096 0.904 25 H 0.055 0.945 26 H 0.036 0.964 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.040 0.960 36 H 0.108 0.892 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.339 0.661 41 H 0.013 0.987 42 H 0.059 0.941 43 H -0.007 1.007 44 H -0.014 1.014 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.453 1.403 19.077 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.045 4.045 4 C -0.022 4.022 5 H 0.109 0.891 6 C -0.118 4.118 7 C -0.103 4.103 8 C -0.181 4.181 9 C -0.019 4.019 10 O -0.321 6.321 11 C -0.021 4.021 12 C -0.181 4.181 13 N -0.312 5.312 14 C -0.042 4.042 15 C -0.004 4.004 16 C -0.580 4.580 17 H 0.079 0.921 18 C -0.197 4.197 19 N -0.573 5.573 20 Si 0.790 3.210 21 H -0.185 1.185 22 H -0.204 1.204 23 H -0.204 1.204 24 H 0.114 0.886 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.058 0.942 36 H 0.126 0.874 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.157 0.843 41 H 0.032 0.968 42 H 0.077 0.923 43 H 0.012 0.988 44 H 0.004 0.996 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.523 1.196 19.289 19.644 hybrid contribution -1.180 0.604 -1.705 2.160 sum -4.703 1.799 17.584 18.291 Atomic orbital electron populations 1.22885 0.79947 1.03646 1.00424 1.87838 1.21022 1.28031 1.95440 1.23285 0.95727 0.84960 1.00542 1.21854 0.90344 0.99038 0.91000 0.89062 1.21342 0.94438 1.00042 0.95981 1.21077 0.95843 0.94992 0.98362 1.22233 0.96036 0.97614 1.02216 1.22682 0.94958 0.93548 0.90752 1.87857 1.79737 1.18652 1.45807 1.22700 0.94328 0.83440 1.01591 1.22183 0.96201 1.00361 0.99356 1.60550 1.54365 1.12893 1.03411 1.21772 0.97664 0.93751 0.91011 1.18891 0.94710 0.94919 0.91856 1.21643 1.45381 0.94855 0.96154 0.92142 1.25968 0.94887 0.97399 1.01453 1.70126 1.47125 1.17557 1.22459 0.85390 0.77858 0.79237 0.78499 1.18471 1.20360 1.20412 0.88591 0.92614 0.94505 0.91101 0.94572 0.92158 0.90762 0.92093 0.91248 0.90574 0.87818 0.94183 0.87439 0.93892 0.90735 0.90565 0.84290 0.96844 0.92253 0.98841 0.99579 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.40 -10.64 9.29 -148.98 -1.38 -12.03 16 3 C 0.03 0.82 5.61 71.98 0.40 1.23 16 4 C 0.09 2.37 2.28 44.92 0.10 2.47 16 5 H 0.09 2.39 6.08 -2.39 -0.01 2.37 16 6 C -0.08 -1.91 4.08 30.59 0.12 -1.78 16 7 C -0.08 -2.06 2.21 -10.67 -0.02 -2.09 16 8 C -0.14 -3.25 5.12 30.75 0.16 -3.10 16 9 C 0.06 1.34 6.85 72.08 0.49 1.83 16 10 O -0.40 -10.10 10.77 -148.98 -1.60 -11.71 16 11 C 0.06 1.21 6.84 72.01 0.49 1.70 16 12 C -0.14 -3.01 5.42 30.68 0.17 -2.85 16 13 N -0.68 -24.14 5.62 -491.59 -2.76 -26.90 16 14 C 0.09 3.64 5.42 86.30 0.47 4.11 16 15 C 0.03 1.82 5.23 29.85 0.16 1.98 16 16 C -0.54 -31.14 9.11 25.60 0.23 -30.91 16 17 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 18 C 0.00 0.04 5.46 84.65 0.46 0.51 16 19 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 20 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.04 0.99 7.35 -2.39 -0.02 0.97 16 29 H 0.06 1.59 7.73 -2.38 -0.02 1.57 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.89 7.62 -2.39 -0.02 1.87 16 32 H 0.07 1.65 6.63 -2.38 -0.02 1.64 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.34 12.74 7.94 -89.69 -0.71 12.03 16 41 H 0.01 0.55 7.36 -2.39 -0.02 0.54 16 42 H 0.06 2.44 8.06 -2.39 -0.02 2.42 16 43 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 44 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 45 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -65.83 353.29 1.27 -64.57 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.22 Total: 21.97 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 4.49 Total: -25.11 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -2.48 Total: -84.21 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -2.99 Total: -23.73 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -65.83 1.27 -64.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595034901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.391 kcal (2) G-P(sol) polarization free energy of solvation -65.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds