Wall clock time and date at job start Mon Mar 30 2020 06:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 113.99977 * 2 1 4 4 C 1.53000 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47081 * 174.99546 * 4 3 2 6 6 C 1.53002 * 109.46965 * 54.99661 * 4 3 2 7 7 C 1.52998 * 109.46837 * 174.99996 * 6 4 3 8 8 C 1.53180 * 109.54471 * 294.82229 * 7 6 4 9 9 C 1.53109 * 109.15715 * 183.24339 * 8 7 6 10 10 O 1.42903 * 109.48751 * 57.47734 * 9 8 7 11 11 C 1.42909 * 114.09267 * 298.88787 * 10 9 8 12 12 C 1.53091 * 109.41636 * 61.15904 * 11 10 9 13 13 N 1.46898 * 109.47140 * 294.99952 * 4 3 2 14 14 C 1.46906 * 110.99888 * 275.00023 * 13 4 3 15 15 C 1.52993 * 109.47378 * 180.02562 * 14 13 4 16 16 C 1.50696 * 109.47429 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00339 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99769 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00300 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46692 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47025 * 120.00050 * 20 18 16 23 23 H 1.48505 * 109.46672 * 240.00052 * 20 18 16 24 24 H 1.08993 * 109.47281 * 300.00429 * 1 2 3 25 25 H 1.09000 * 109.46846 * 60.00751 * 1 2 3 26 26 H 1.08991 * 109.46959 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47367 * 59.99053 * 3 2 1 28 28 H 1.09006 * 109.46933 * 299.99405 * 3 2 1 29 29 H 1.08997 * 109.47201 * 294.99945 * 6 4 3 30 30 H 1.08999 * 109.47075 * 55.00466 * 6 4 3 31 31 H 1.09003 * 109.54353 * 55.00092 * 7 6 4 32 32 H 1.09002 * 109.52482 * 303.05974 * 8 7 6 33 33 H 1.08997 * 109.52234 * 63.25078 * 8 7 6 34 34 H 1.09000 * 109.40501 * 297.49425 * 9 8 7 35 35 H 1.08993 * 109.47909 * 177.50525 * 9 8 7 36 36 H 1.08995 * 109.47947 * 301.17113 * 11 10 9 37 37 H 1.09001 * 109.48617 * 181.14749 * 11 10 9 38 38 H 1.08998 * 109.51931 * 182.48181 * 12 11 10 39 39 H 1.09000 * 109.57007 * 62.32776 * 12 11 10 40 40 H 1.00901 * 111.00121 * 151.04609 * 13 4 3 41 41 H 1.09004 * 109.47040 * 299.99934 * 14 13 4 42 42 H 1.09000 * 109.47033 * 59.99886 * 14 13 4 43 43 H 1.09004 * 109.46862 * 299.99897 * 15 14 13 44 44 H 1.09004 * 109.46998 * 59.99419 * 15 14 13 45 45 H 0.97000 * 120.00540 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1764 -0.0890 6 6 3.9790 0.3193 -1.1806 7 6 5.5072 0.3005 -1.2536 8 6 6.0223 1.7075 -1.5721 9 6 7.5453 1.6627 -1.7230 10 8 7.8957 0.7283 -2.7459 11 6 7.4811 -0.6128 -2.4778 12 6 5.9555 -0.6599 -2.3594 13 7 3.9769 0.5627 1.2561 14 6 4.1189 1.5665 2.3194 15 6 4.5796 0.8827 3.6081 16 6 4.7259 1.9124 4.6986 17 1 4.5113 2.9507 4.4931 18 6 5.1327 1.5289 5.9589 19 7 5.3935 0.2644 6.2093 20 14 5.3133 2.8052 7.3109 21 1 4.9618 4.1454 6.7764 22 1 4.4043 2.4672 8.4354 23 1 6.7170 2.8175 7.7955 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.6885 1.8464 0.8899 28 1 1.6887 1.8463 -0.8901 29 1 3.6092 -0.6971 -1.0455 30 1 3.5762 0.7326 -2.1053 31 1 5.9138 -0.0290 -0.2974 32 1 5.5754 2.0570 -2.5028 33 1 5.7551 2.3853 -0.7614 34 1 7.9938 1.3534 -0.7790 35 1 7.9130 2.6524 -1.9934 36 1 7.9290 -0.9518 -1.5438 37 1 7.8028 -1.2624 -3.2919 38 1 5.6406 -1.6735 -2.1114 39 1 5.5064 -0.3603 -3.3063 40 1 4.8370 0.0519 1.1239 41 1 4.8566 2.3111 2.0199 42 1 3.1590 2.0540 2.4894 43 1 3.8423 0.1378 3.9078 44 1 5.5397 0.3954 3.4377 45 1 5.6800 -0.0055 7.0958 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595034902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:23 Heat of formation + Delta-G solvation = -116.942396 kcal Electronic energy + Delta-G solvation = -21823.642822 eV Core-core repulsion = 18647.245183 eV Total energy + Delta-G solvation = -3176.397640 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.69835 -38.11895 -36.32669 -34.40070 -32.86855 -31.20306 -30.83531 -28.00334 -27.53998 -25.73726 -24.11144 -23.67354 -22.98677 -20.61057 -20.37942 -19.60172 -16.53096 -16.36663 -16.08034 -16.03867 -15.88351 -15.06480 -15.00844 -14.72012 -14.54174 -14.33519 -13.75765 -13.59494 -13.09283 -12.81598 -12.45980 -12.27417 -12.10857 -11.80158 -11.61718 -11.40092 -11.33749 -11.08928 -10.99608 -10.94498 -10.74306 -10.46385 -10.29934 -10.20721 -9.96765 -9.51662 -9.39974 -9.32671 -9.10418 -8.34794 -7.71838 -5.99024 -4.01572 3.30907 3.38302 3.42036 3.80645 4.03433 4.43662 4.56347 4.65031 4.72876 4.79986 4.93216 5.12794 5.25027 5.27853 5.33889 5.36965 5.40817 5.44450 5.48933 5.55243 5.58945 5.62133 5.71946 5.76886 5.78749 5.82165 5.95132 5.99144 6.02848 6.10702 6.31546 6.36064 6.39071 6.47670 7.00446 7.11456 7.37071 7.57898 7.75958 7.86283 8.00442 8.12023 8.44980 9.06119 9.62192 11.12426 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.004850 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.879725 B = 5771.819252 C = 7356.388287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.075 3.925 4 C 0.087 3.913 5 H 0.053 0.947 6 C -0.107 4.107 7 C -0.096 4.096 8 C -0.152 4.152 9 C 0.059 3.941 10 O -0.387 6.387 11 C 0.059 3.941 12 C -0.147 4.147 13 N -0.677 5.677 14 C 0.066 3.934 15 C 0.026 3.974 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.038 0.962 25 H 0.032 0.968 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.336 0.664 41 H 0.013 0.987 42 H 0.055 0.945 43 H 0.025 0.975 44 H 0.012 0.988 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.159 0.265 -18.606 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C -0.003 4.003 4 C -0.024 4.024 5 H 0.070 0.930 6 C -0.145 4.145 7 C -0.114 4.114 8 C -0.190 4.190 9 C -0.017 4.017 10 O -0.306 6.306 11 C -0.018 4.018 12 C -0.185 4.185 13 N -0.310 5.310 14 C -0.062 4.062 15 C -0.011 4.011 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.099 0.901 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.156 0.844 41 H 0.031 0.969 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.031 0.969 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.524 -0.147 -18.441 18.614 hybrid contribution 0.448 1.329 0.921 1.678 sum -2.076 1.182 -17.521 17.683 Atomic orbital electron populations 1.22680 0.82347 1.02239 0.99305 1.87975 1.18277 1.27396 1.95141 1.22562 0.93823 0.84847 0.99046 1.21587 0.93148 0.96765 0.90854 0.92960 1.21658 0.93707 1.01924 0.97180 1.21294 0.96354 0.94893 0.98887 1.22300 0.96465 0.97707 1.02491 1.22591 0.94508 0.93220 0.91424 1.87898 1.79446 1.17856 1.45362 1.22591 0.94025 0.83859 1.01305 1.22202 0.96471 1.00334 0.99486 1.60573 1.37616 1.27984 1.04869 1.22202 0.98744 0.92638 0.92630 1.19050 0.96417 0.96010 0.89654 1.21213 1.45338 0.94150 0.95235 0.92806 1.24997 0.95510 0.95197 0.98621 1.69984 1.46307 1.15285 1.21624 0.86555 0.77675 0.81782 0.82092 1.19803 1.20986 1.21027 0.94313 0.94983 0.90065 0.93244 0.94234 0.90020 0.91963 0.90629 0.91229 0.90680 0.92944 0.89076 0.93042 0.89150 0.90677 0.91255 0.84352 0.96919 0.92652 0.95620 0.96927 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.37 -5.65 9.87 -35.23 -0.35 -6.00 16 3 C 0.07 1.06 5.70 37.16 0.21 1.27 16 4 C 0.09 1.25 2.31 -67.71 -0.16 1.09 16 5 H 0.05 0.74 6.08 -51.93 -0.32 0.42 16 6 C -0.11 -1.31 4.00 -26.73 -0.11 -1.42 16 7 C -0.10 -1.10 2.17 -90.44 -0.20 -1.30 16 8 C -0.15 -1.69 5.11 -26.58 -0.14 -1.82 16 9 C 0.06 0.66 6.84 37.21 0.25 0.92 16 10 O -0.39 -4.76 10.77 -35.23 -0.38 -5.13 16 11 C 0.06 0.61 6.84 37.20 0.25 0.86 16 12 C -0.15 -1.50 5.42 -26.59 -0.14 -1.64 16 13 N -0.68 -12.15 6.26 -106.73 -0.67 -12.82 16 14 C 0.07 1.39 5.42 -3.82 -0.02 1.37 16 15 C 0.03 0.69 5.23 -27.89 -0.15 0.54 16 16 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 20 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.76 7.35 -51.93 -0.38 0.38 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.11 7.73 -51.93 -0.40 0.71 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.98 6.29 -51.93 -0.33 0.65 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.88 6.63 -51.93 -0.34 0.53 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.34 5.89 6.42 -39.29 -0.25 5.64 16 41 H 0.01 0.26 8.06 -51.93 -0.42 -0.16 16 42 H 0.05 1.18 7.36 -51.93 -0.38 0.80 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 351.63 15.07 5.30 5.30 Total: -1.00 -31.33 351.63 -8.15 -39.48 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -8.28 Total: 1.03 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 0.52 Total: -12.21 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.07 Total: -39.18 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.73 Total: -11.13 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.33 -8.15 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595034902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.465 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds