Wall clock time and date at job start Mon Mar 30 2020 06:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 113.99977 * 2 1 4 4 C 1.53000 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47081 * 174.99546 * 4 3 2 6 6 C 1.53002 * 109.46965 * 54.99661 * 4 3 2 7 7 C 1.52998 * 109.46837 * 174.99996 * 6 4 3 8 8 C 1.53180 * 109.54471 * 294.82229 * 7 6 4 9 9 C 1.53109 * 109.15715 * 183.24339 * 8 7 6 10 10 O 1.42903 * 109.48751 * 57.47734 * 9 8 7 11 11 C 1.42909 * 114.09267 * 298.88787 * 10 9 8 12 12 C 1.53091 * 109.41636 * 61.15904 * 11 10 9 13 13 N 1.46898 * 109.47140 * 294.99952 * 4 3 2 14 14 C 1.46906 * 110.99888 * 275.00023 * 13 4 3 15 15 C 1.52993 * 109.47378 * 180.02562 * 14 13 4 16 16 C 1.50696 * 109.47429 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00339 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99769 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00300 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46692 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47025 * 120.00050 * 20 18 16 23 23 H 1.48505 * 109.46672 * 240.00052 * 20 18 16 24 24 H 1.08993 * 109.47281 * 300.00429 * 1 2 3 25 25 H 1.09000 * 109.46846 * 60.00751 * 1 2 3 26 26 H 1.08991 * 109.46959 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47367 * 59.99053 * 3 2 1 28 28 H 1.09006 * 109.46933 * 299.99405 * 3 2 1 29 29 H 1.08997 * 109.47201 * 294.99945 * 6 4 3 30 30 H 1.08999 * 109.47075 * 55.00466 * 6 4 3 31 31 H 1.09003 * 109.54353 * 55.00092 * 7 6 4 32 32 H 1.09002 * 109.52482 * 303.05974 * 8 7 6 33 33 H 1.08997 * 109.52234 * 63.25078 * 8 7 6 34 34 H 1.09000 * 109.40501 * 297.49425 * 9 8 7 35 35 H 1.08993 * 109.47909 * 177.50525 * 9 8 7 36 36 H 1.08995 * 109.47947 * 301.17113 * 11 10 9 37 37 H 1.09001 * 109.48617 * 181.14749 * 11 10 9 38 38 H 1.08998 * 109.51931 * 182.48181 * 12 11 10 39 39 H 1.09000 * 109.57007 * 62.32776 * 12 11 10 40 40 H 1.00901 * 111.00121 * 151.04609 * 13 4 3 41 41 H 1.09004 * 109.47040 * 299.99934 * 14 13 4 42 42 H 1.09000 * 109.47033 * 59.99886 * 14 13 4 43 43 H 1.09004 * 109.46862 * 299.99897 * 15 14 13 44 44 H 1.09004 * 109.46998 * 59.99419 * 15 14 13 45 45 H 0.97000 * 120.00540 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1764 -0.0890 6 6 3.9790 0.3193 -1.1806 7 6 5.5072 0.3005 -1.2536 8 6 6.0223 1.7075 -1.5721 9 6 7.5453 1.6627 -1.7230 10 8 7.8957 0.7283 -2.7459 11 6 7.4811 -0.6128 -2.4778 12 6 5.9555 -0.6599 -2.3594 13 7 3.9769 0.5627 1.2561 14 6 4.1189 1.5665 2.3194 15 6 4.5796 0.8827 3.6081 16 6 4.7259 1.9124 4.6986 17 1 4.5113 2.9507 4.4931 18 6 5.1327 1.5289 5.9589 19 7 5.3935 0.2644 6.2093 20 14 5.3133 2.8052 7.3109 21 1 4.9618 4.1454 6.7764 22 1 4.4043 2.4672 8.4354 23 1 6.7170 2.8175 7.7955 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.6885 1.8464 0.8899 28 1 1.6887 1.8463 -0.8901 29 1 3.6092 -0.6971 -1.0455 30 1 3.5762 0.7326 -2.1053 31 1 5.9138 -0.0290 -0.2974 32 1 5.5754 2.0570 -2.5028 33 1 5.7551 2.3853 -0.7614 34 1 7.9938 1.3534 -0.7790 35 1 7.9130 2.6524 -1.9934 36 1 7.9290 -0.9518 -1.5438 37 1 7.8028 -1.2624 -3.2919 38 1 5.6406 -1.6735 -2.1114 39 1 5.5064 -0.3603 -3.3063 40 1 4.8370 0.0519 1.1239 41 1 4.8566 2.3111 2.0199 42 1 3.1590 2.0540 2.4894 43 1 3.8423 0.1378 3.9078 44 1 5.5397 0.3954 3.4377 45 1 5.6800 -0.0055 7.0958 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595034902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:23 Heat of formation + Delta-G solvation = -138.143507 kcal Electronic energy + Delta-G solvation = -21824.562172 eV Core-core repulsion = 18647.245183 eV Total energy + Delta-G solvation = -3177.316989 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.64702 -39.22307 -37.53482 -35.89153 -34.65012 -32.45449 -31.98173 -29.71398 -28.51389 -26.77837 -25.97694 -24.56277 -24.05608 -22.38750 -21.50766 -20.63549 -18.51600 -17.51333 -17.16689 -17.13809 -16.90436 -16.50185 -16.18419 -15.98841 -15.69710 -15.53844 -15.09126 -14.85949 -14.38108 -14.22430 -13.93948 -13.30632 -13.22556 -13.13959 -12.99025 -12.86747 -12.68680 -12.40100 -12.29007 -12.22163 -12.00388 -11.88125 -11.80808 -11.34495 -11.21056 -11.18836 -11.08488 -10.58214 -10.46575 -10.39794 -9.17756 -8.20800 -6.32489 1.39393 1.39989 1.53174 2.39736 2.96388 3.00462 3.12703 3.36000 3.63574 3.74198 3.87715 4.07949 4.17849 4.25751 4.33890 4.40367 4.44816 4.50013 4.52603 4.57759 4.60423 4.61399 4.65949 4.77846 4.79980 4.81156 4.88759 4.90595 4.99058 5.04212 5.10134 5.15142 5.18995 5.35590 5.44887 5.46563 5.67949 5.79619 6.15477 6.25583 6.27378 6.45810 6.59132 6.85385 7.37027 8.91681 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.004850 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.879725 B = 5771.819252 C = 7356.388287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.073 3.927 4 C 0.085 3.915 5 H 0.061 0.939 6 C -0.094 4.094 7 C -0.095 4.095 8 C -0.147 4.147 9 C 0.057 3.943 10 O -0.400 6.400 11 C 0.054 3.946 12 C -0.141 4.141 13 N -0.686 5.686 14 C 0.087 3.913 15 C 0.034 3.966 16 C -0.543 4.543 17 H 0.060 0.940 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.966 3.034 21 H -0.261 1.261 22 H -0.278 1.278 23 H -0.277 1.277 24 H 0.033 0.967 25 H 0.055 0.945 26 H 0.091 0.909 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.337 0.663 41 H 0.019 0.981 42 H 0.052 0.948 43 H -0.010 1.010 44 H -0.011 1.011 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.518 1.528 -19.817 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.004 4.004 4 C -0.024 4.024 5 H 0.079 0.921 6 C -0.132 4.132 7 C -0.113 4.113 8 C -0.184 4.184 9 C -0.020 4.020 10 O -0.320 6.320 11 C -0.022 4.022 12 C -0.179 4.179 13 N -0.319 5.319 14 C -0.042 4.042 15 C -0.004 4.004 16 C -0.581 4.581 17 H 0.079 0.921 18 C -0.197 4.197 19 N -0.572 5.572 20 Si 0.791 3.209 21 H -0.185 1.185 22 H -0.204 1.204 23 H -0.203 1.203 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.110 0.890 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.122 0.878 36 H 0.064 0.936 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.157 0.843 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.008 0.992 44 H 0.008 0.992 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.895 1.118 -19.674 19.917 hybrid contribution 0.534 0.874 1.264 1.627 sum -2.361 1.993 -18.410 18.667 Atomic orbital electron populations 1.22848 0.80712 1.03298 1.00158 1.87933 1.20199 1.28010 1.95326 1.22604 0.93412 0.84738 0.99630 1.21722 0.93602 0.97372 0.89751 0.92087 1.21539 0.94040 1.00747 0.96842 1.21255 0.95844 0.95691 0.98540 1.22246 0.96400 0.97124 1.02662 1.22653 0.94607 0.93764 0.90956 1.87880 1.79752 1.18625 1.45697 1.22733 0.94154 0.83429 1.01887 1.22155 0.96327 1.00258 0.99156 1.60492 1.37747 1.27555 1.06130 1.21786 0.98345 0.92685 0.91377 1.18890 0.94221 0.95101 0.92146 1.21633 1.45427 0.94812 0.96230 0.92150 1.25975 0.94871 0.97427 1.01419 1.70121 1.47053 1.17564 1.22505 0.85380 0.77876 0.79193 0.78471 1.18479 1.20420 1.20259 0.94855 0.92654 0.89026 0.95006 0.91219 0.91312 0.89982 0.92601 0.90173 0.91344 0.93923 0.87754 0.93559 0.87298 0.90102 0.90440 0.84292 0.96252 0.92926 0.99187 0.99225 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.40 -11.69 9.87 -148.98 -1.47 -13.16 16 3 C 0.07 1.99 5.70 71.98 0.41 2.40 16 4 C 0.09 2.36 2.31 44.92 0.10 2.47 16 5 H 0.06 1.62 6.08 -2.39 -0.01 1.60 16 6 C -0.09 -2.15 4.00 30.59 0.12 -2.03 16 7 C -0.09 -2.08 2.17 -10.68 -0.02 -2.10 16 8 C -0.15 -3.04 5.11 30.69 0.16 -2.88 16 9 C 0.06 1.21 6.84 72.02 0.49 1.71 16 10 O -0.40 -9.30 10.77 -148.98 -1.60 -10.91 16 11 C 0.05 1.06 6.84 72.01 0.49 1.55 16 12 C -0.14 -2.65 5.42 30.68 0.17 -2.48 16 13 N -0.69 -24.89 6.26 -491.57 -3.08 -27.96 16 14 C 0.09 3.71 5.42 86.30 0.47 4.18 16 15 C 0.03 1.85 5.23 29.84 0.16 2.00 16 16 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 17 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 18 C 0.00 0.06 5.46 84.65 0.46 0.52 16 19 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 20 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.03 0.96 7.35 -2.39 -0.02 0.94 16 28 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.07 1.79 7.73 -2.39 -0.02 1.77 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.46 6.29 -2.39 -0.02 1.44 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.51 6.63 -2.39 -0.02 1.49 16 34 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.34 12.11 6.42 -89.69 -0.58 11.54 16 41 H 0.02 0.80 8.06 -2.38 -0.02 0.78 16 42 H 0.05 2.26 7.36 -2.39 -0.02 2.25 16 43 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 44 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 45 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -67.66 351.63 1.01 -66.64 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.36 Total: 20.19 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 4.49 Total: -23.99 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -2.79 Total: -85.40 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -3.07 Total: -24.07 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -67.66 1.01 -66.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595034902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.499 kcal (2) G-P(sol) polarization free energy of solvation -67.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds