Wall clock time and date at job start Mon Mar 30 2020 06:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99456 * 2 1 4 4 C 1.53004 * 109.46790 * 175.10836 * 3 2 1 5 5 N 1.46904 * 109.47082 * 61.96069 * 4 3 2 6 6 C 1.46902 * 110.99803 * 196.55405 * 5 4 3 7 7 C 1.50692 * 109.47196 * 66.04943 * 6 5 4 8 8 H 1.08004 * 120.00369 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99897 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99702 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00026 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46756 * 60.00001 * 11 9 7 13 13 H 1.48496 * 109.46911 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47341 * 300.00049 * 11 9 7 15 15 C 1.46897 * 110.99594 * 72.59900 * 5 4 3 16 16 C 1.53003 * 109.46989 * 200.36734 * 15 5 4 17 17 H 1.09001 * 109.47268 * 304.16704 * 16 15 5 18 18 O 1.42902 * 109.46943 * 64.16011 * 16 15 5 19 19 C 1.42902 * 114.00246 * 268.72151 * 18 16 15 20 20 C 1.53002 * 109.47347 * 184.16164 * 16 15 5 21 21 C 1.53782 * 113.61094 * 279.13661 * 20 16 15 22 22 C 1.53955 * 87.01509 * 220.04632 * 21 20 16 23 23 C 1.53777 * 87.11306 * 25.36576 * 22 21 20 24 24 H 1.08998 * 109.47222 * 304.88970 * 1 2 3 25 25 H 1.08993 * 109.47714 * 64.89646 * 1 2 3 26 26 H 1.09006 * 109.46720 * 184.89736 * 1 2 3 27 27 H 1.09000 * 109.47037 * 55.11575 * 3 2 1 28 28 H 1.08989 * 109.47413 * 295.10823 * 3 2 1 29 29 H 1.08999 * 109.47424 * 301.96227 * 4 3 2 30 30 H 1.09002 * 109.47232 * 181.96046 * 4 3 2 31 31 H 1.09003 * 109.46550 * 186.04621 * 6 5 4 32 32 H 1.08998 * 109.46859 * 306.04446 * 6 5 4 33 33 H 0.97006 * 119.99677 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.47369 * 320.36389 * 15 5 4 35 35 H 1.08999 * 109.47421 * 80.37014 * 15 5 4 36 36 H 1.08997 * 109.47073 * 306.37417 * 19 18 16 37 37 H 1.08999 * 109.46861 * 66.37714 * 19 18 16 38 38 H 1.08999 * 109.46857 * 186.37118 * 19 18 16 39 39 H 1.08992 * 112.84584 * 50.33260 * 20 16 15 40 40 H 1.08988 * 113.61844 * 334.56633 * 21 20 16 41 41 H 1.09000 * 113.61063 * 105.47085 * 21 20 16 42 42 H 1.09003 * 113.54246 * 270.81343 * 22 21 20 43 43 H 1.09008 * 113.74161 * 139.94894 * 22 21 20 44 44 H 1.08997 * 113.61600 * 220.08420 * 23 22 21 45 45 H 1.09005 * 113.61578 * 89.18740 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5306 1.1869 0.1230 5 7 4.0604 0.4579 -1.0371 6 6 5.4263 -0.0181 -0.7809 7 6 5.4002 -1.0547 0.3125 8 1 4.4627 -1.3320 0.7716 9 6 6.5732 -1.6492 0.7270 10 7 7.7148 -1.3112 0.1683 11 14 6.5409 -2.9338 2.0829 12 1 5.6889 -4.0752 1.6631 13 1 7.9217 -3.4149 2.3418 14 1 5.9866 -2.3318 3.3220 15 6 4.0105 1.2880 -2.2480 16 6 4.0732 0.3897 -3.4851 17 1 4.9657 -0.2341 -3.4363 18 8 2.9123 -0.4424 -3.5287 19 6 3.0766 -1.7040 -2.8779 20 6 4.1259 1.2580 -4.7437 21 6 2.7504 1.7832 -5.1878 22 6 3.2002 1.5039 -6.6335 23 6 4.1536 0.4476 -6.0504 24 1 -0.3633 0.5878 0.8429 25 1 -0.3634 0.4359 -0.9305 26 1 -0.3633 -1.0240 0.0877 27 1 1.6209 1.8765 0.8430 28 1 1.7596 1.8148 -0.9304 29 1 3.7803 0.6470 1.0364 30 1 3.9712 2.1834 0.1581 31 1 5.8338 -0.4595 -1.6904 32 1 6.0511 0.8200 -0.4722 33 1 8.5400 -1.7298 0.4597 34 1 3.0816 1.8581 -2.2598 35 1 4.8578 1.9737 -2.2537 36 1 3.9562 -2.2077 -3.2787 37 1 3.2045 -1.5464 -1.8070 38 1 2.1943 -2.3200 -3.0516 39 1 4.8928 2.0308 -4.6929 40 1 1.9186 1.1593 -4.8611 41 1 2.5971 2.8409 -4.9739 42 1 3.7131 2.3450 -7.1000 43 1 2.4161 1.0840 -7.2637 44 1 5.1313 0.4286 -6.5318 45 1 3.7059 -0.5422 -5.9599 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595335096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:33 Heat of formation + Delta-G solvation = -67.226999 kcal Electronic energy + Delta-G solvation = -22820.569458 eV Core-core repulsion = 19646.327640 eV Total energy + Delta-G solvation = -3174.241818 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -39.28751 -37.69626 -36.56349 -35.45334 -32.54178 -30.32378 -29.03979 -26.70253 -25.84550 -25.50032 -25.17830 -24.02994 -22.29470 -21.28145 -19.59307 -18.99032 -16.59759 -16.09451 -15.81687 -15.57682 -15.44670 -14.95141 -14.64156 -14.59117 -14.27618 -13.57445 -13.26294 -12.94644 -12.67723 -12.22779 -12.09246 -11.98329 -11.95254 -11.83616 -11.56827 -11.18087 -11.10837 -10.86007 -10.72185 -10.66626 -10.47691 -10.22829 -10.14048 -9.97837 -9.87165 -9.46967 -9.27968 -9.06075 -8.71646 -8.39107 -7.06157 -5.99312 -3.99618 3.36381 3.40083 3.44048 4.30684 4.45020 4.46252 4.74431 4.91078 4.96448 5.06514 5.15268 5.36213 5.48132 5.57568 5.69715 5.71357 5.78506 5.81729 5.86650 5.91798 5.92971 5.99161 6.05513 6.07410 6.08529 6.13959 6.17752 6.26586 6.32980 6.42075 6.51037 6.56446 6.73991 6.79839 7.07015 7.29167 7.36240 7.70340 7.87455 7.99643 8.14574 8.26180 8.61021 9.10066 9.64674 11.11492 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.006444 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.750808 B = 4343.869810 C = 5395.457199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.360 6.360 3 C 0.071 3.929 4 C 0.061 3.939 5 N -0.521 5.521 6 C 0.192 3.808 7 C -0.503 4.503 8 H 0.066 0.934 9 C 0.055 3.945 10 N -0.901 5.901 11 Si 0.896 3.104 12 H -0.276 1.276 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.035 3.965 16 C 0.110 3.890 17 H 0.063 0.937 18 O -0.379 6.379 19 C 0.034 3.966 20 C -0.112 4.112 21 C -0.126 4.126 22 C -0.143 4.143 23 C -0.131 4.131 24 H 0.030 0.970 25 H 0.033 0.967 26 H 0.078 0.922 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.093 0.907 30 H 0.032 0.968 31 H 0.029 0.971 32 H -0.013 1.013 33 H 0.260 0.740 34 H 0.064 0.936 35 H 0.027 0.973 36 H 0.024 0.976 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.686 5.950 -7.631 14.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C -0.006 4.006 4 C -0.067 4.067 5 N -0.245 5.245 6 C 0.067 3.933 7 C -0.542 4.542 8 H 0.085 0.915 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.204 1.204 15 C -0.094 4.094 16 C 0.051 3.949 17 H 0.081 0.919 18 O -0.298 6.298 19 C -0.062 4.062 20 C -0.131 4.131 21 C -0.163 4.163 22 C -0.181 4.181 23 C -0.168 4.168 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.112 0.888 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.005 0.995 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.835 5.382 -7.780 14.384 hybrid contribution 0.740 0.183 1.011 1.266 sum -10.095 5.565 -6.769 13.368 Atomic orbital electron populations 1.22647 0.83097 1.01885 0.98881 1.88114 1.17500 1.27205 1.94986 1.22605 0.94909 0.84731 0.98357 1.22008 0.91212 0.96480 0.97009 1.62032 1.25874 1.35836 1.00746 1.19763 0.82093 0.94444 0.96985 1.21165 0.93322 1.21232 1.18440 0.91543 1.24977 0.95472 0.97159 0.96961 1.69954 0.98074 1.43369 1.42645 0.86595 0.76728 0.81979 0.82306 1.20173 1.21543 1.20351 1.22602 0.99625 0.94973 0.92179 1.21795 0.89086 0.91804 0.92193 0.91878 1.87651 1.36079 1.28760 1.77341 1.22860 0.98882 0.83720 1.00760 1.22681 0.98399 0.98138 0.93846 1.22821 0.97905 1.00315 0.95260 1.22827 0.99380 0.99049 0.96820 1.22853 0.99228 0.98685 0.96075 0.95181 0.94850 0.90334 0.94501 0.94199 0.88823 0.94997 0.95297 0.99479 0.92999 0.91768 0.95461 0.95710 0.89406 0.92136 0.88934 0.88911 0.92486 0.90906 0.91964 0.92163 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.36 -6.52 10.60 -35.23 -0.37 -6.89 16 3 C 0.07 1.18 6.08 37.16 0.23 1.40 16 4 C 0.06 1.19 5.20 -3.82 -0.02 1.17 16 5 N -0.52 -10.97 2.38 -236.07 -0.56 -11.53 16 6 C 0.19 4.88 4.54 -4.98 -0.02 4.86 16 7 C -0.50 -13.87 8.28 -34.44 -0.29 -14.15 16 8 H 0.07 1.85 7.26 -52.48 -0.38 1.47 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 11 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.04 0.64 4.48 -3.82 -0.02 0.63 16 16 C 0.11 1.92 2.33 -26.73 -0.06 1.86 16 17 H 0.06 1.26 6.25 -51.93 -0.32 0.93 16 18 O -0.38 -6.86 8.44 -35.23 -0.30 -7.16 16 19 C 0.03 0.64 10.68 101.05 1.08 1.72 16 20 C -0.11 -1.60 3.58 -89.81 -0.32 -1.92 16 21 C -0.13 -1.63 7.49 -25.83 -0.19 -1.82 16 22 C -0.14 -1.65 8.09 -25.83 -0.21 -1.85 16 23 C -0.13 -1.72 7.54 -25.92 -0.20 -1.91 16 24 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 28 H 0.04 0.63 6.52 -51.94 -0.34 0.29 16 29 H 0.09 2.03 6.58 -51.93 -0.34 1.69 16 30 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 31 H 0.03 0.79 6.62 -51.93 -0.34 0.44 16 32 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.06 1.10 6.26 -51.93 -0.32 0.78 16 35 H 0.03 0.50 7.99 -51.93 -0.41 0.09 16 36 H 0.02 0.46 7.94 -51.93 -0.41 0.05 16 37 H 0.09 1.91 6.50 -51.93 -0.34 1.57 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.09 1.33 7.02 -51.94 -0.36 0.97 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 1.21 7.72 -51.93 -0.40 0.81 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -29.46 352.82 -7.39 -36.85 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -8.18 Total: -0.44 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 0.99 Total: -7.03 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.17 Total: -37.36 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.67 Total: -14.05 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.46 -7.39 -36.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595335096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.378 kcal (2) G-P(sol) polarization free energy of solvation -29.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds