Wall clock time and date at job start Mon Mar 30 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42895 * 113.99851 * 2 1 4 4 C 1.53002 * 109.47173 * 184.92734 * 3 2 1 5 5 N 1.46899 * 109.47081 * 66.84756 * 4 3 2 6 6 C 1.46897 * 111.00304 * 286.69508 * 5 4 3 7 7 C 1.50700 * 109.46994 * 299.24871 * 6 5 4 8 8 H 1.07994 * 119.99769 * 4.65900 * 7 6 5 9 9 C 1.37878 * 119.99613 * 184.66879 * 7 6 5 10 10 N 1.31508 * 120.00196 * 5.03864 * 9 7 6 11 11 Si 1.86798 * 119.99744 * 185.04051 * 9 7 6 12 12 H 1.48498 * 109.47353 * 94.99635 * 11 9 7 13 13 H 1.48497 * 109.47137 * 214.99704 * 11 9 7 14 14 H 1.48503 * 109.47026 * 334.99429 * 11 9 7 15 15 C 1.46905 * 110.99866 * 162.73844 * 5 4 3 16 16 C 1.52993 * 109.47091 * 201.32219 * 15 5 4 17 17 H 1.08999 * 109.47479 * 52.94547 * 16 15 5 18 18 O 1.42908 * 109.47255 * 292.94891 * 16 15 5 19 19 C 1.42899 * 114.00339 * 150.00381 * 18 16 15 20 20 C 1.53002 * 109.47218 * 172.95020 * 16 15 5 21 21 C 1.53783 * 113.61014 * 277.49663 * 20 16 15 22 22 C 1.53785 * 87.07991 * 220.01842 * 21 20 16 23 23 C 1.53776 * 113.61498 * 179.97438 * 20 16 15 24 24 H 1.09001 * 109.47046 * 64.97988 * 1 2 3 25 25 H 1.09004 * 109.46736 * 184.97350 * 1 2 3 26 26 H 1.09001 * 109.47183 * 304.97085 * 1 2 3 27 27 H 1.09000 * 109.47001 * 64.92340 * 3 2 1 28 28 H 1.09006 * 109.47257 * 304.93064 * 3 2 1 29 29 H 1.08998 * 109.46710 * 306.84769 * 4 3 2 30 30 H 1.09003 * 109.46643 * 186.84768 * 4 3 2 31 31 H 1.09008 * 109.46715 * 59.24620 * 6 5 4 32 32 H 1.08992 * 109.47165 * 179.24145 * 6 5 4 33 33 H 0.97001 * 120.00103 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.46377 * 81.32097 * 15 5 4 35 35 H 1.09000 * 109.46950 * 321.32212 * 15 5 4 36 36 H 1.08994 * 109.47374 * 180.02562 * 19 18 16 37 37 H 1.08998 * 109.46833 * 59.99329 * 19 18 16 38 38 H 1.09003 * 109.46616 * 299.99648 * 19 18 16 39 39 H 1.08998 * 112.84922 * 48.80020 * 20 16 15 40 40 H 1.08997 * 113.61679 * 334.56578 * 21 20 16 41 41 H 1.09001 * 113.61400 * 105.47179 * 21 20 16 42 42 H 1.09005 * 113.61232 * 270.88723 * 22 21 20 43 43 H 1.08996 * 113.69334 * 139.99796 * 22 21 20 44 44 H 1.08997 * 113.61694 * 254.52937 * 23 20 16 45 45 H 1.08999 * 113.61549 * 25.43043 * 23 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5306 1.1868 -0.1239 5 7 3.8737 0.6508 -1.4479 6 6 3.5578 -0.7812 -1.5341 7 6 4.3570 -1.5349 -0.5025 8 1 4.9746 -0.9966 0.2010 9 6 4.2998 -2.9118 -0.4572 10 7 3.6277 -3.5725 -1.3743 11 14 5.1770 -3.8385 0.9070 12 1 4.2224 -4.1162 2.0101 13 1 5.7046 -5.1205 0.3746 14 1 6.3015 -3.0157 1.4207 15 6 5.2863 0.8984 -1.7662 16 6 5.4870 0.8307 -3.2814 17 1 4.7784 1.4979 -3.7720 18 8 5.2704 -0.5083 -3.7313 19 6 4.7676 -0.5990 -5.0658 20 6 6.9145 1.2600 -3.6264 21 6 7.0977 2.7849 -3.7026 22 6 7.9987 2.5367 -4.9239 23 6 7.2207 1.2263 -5.1330 24 1 -0.3633 0.4346 -0.9312 25 1 -0.3633 -1.0239 0.0891 26 1 -0.3633 0.5890 0.8421 27 1 1.7601 1.8145 0.9308 28 1 1.6204 1.8767 -0.8426 29 1 3.9068 0.5159 0.6484 30 1 3.9829 2.1711 -0.0020 31 1 2.4938 -0.9303 -1.3495 32 1 3.8090 -1.1494 -2.5287 33 1 3.5871 -4.5412 -1.3422 34 1 5.9053 0.1422 -1.2834 35 1 5.5721 1.8865 -1.4056 36 1 4.6298 -1.6470 -5.3317 37 1 5.4774 -0.1394 -5.7535 38 1 3.8114 -0.0796 -5.1297 39 1 7.6663 0.7585 -3.0170 40 1 6.1802 3.3237 -3.9392 41 1 7.6274 3.2044 -2.8473 42 1 9.0477 2.3854 -4.6690 43 1 7.8583 3.2610 -5.7262 44 1 7.8497 0.3878 -5.4321 45 1 6.3369 1.3387 -5.7609 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595335097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:37 Heat of formation + Delta-G solvation = -58.127176 kcal Electronic energy + Delta-G solvation = -22818.139026 eV Core-core repulsion = 19644.291806 eV Total energy + Delta-G solvation = -3173.847220 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.35239 -37.62961 -36.48446 -35.36481 -32.18459 -30.42404 -28.54333 -26.41926 -25.90607 -25.49056 -25.29065 -23.83192 -22.48730 -20.81712 -19.58340 -19.15135 -16.44270 -16.12494 -15.90589 -15.60191 -15.23559 -14.94460 -14.56930 -14.14449 -14.03074 -13.45282 -13.39286 -13.28368 -12.54668 -12.24289 -12.01386 -11.95723 -11.75504 -11.40954 -11.24900 -10.94983 -10.86668 -10.74059 -10.67455 -10.54532 -10.46231 -10.32519 -9.99931 -9.92436 -9.68591 -9.64188 -9.27601 -8.87052 -8.51935 -7.90771 -6.94146 -5.70982 -3.71403 3.43548 3.49730 3.51895 4.42789 4.55101 4.65537 4.73930 4.85886 4.90474 5.07106 5.26936 5.61295 5.63551 5.67573 5.69390 5.75992 5.83377 5.87042 5.93101 5.95749 5.97006 5.99152 6.02526 6.06842 6.09097 6.14161 6.18266 6.25020 6.30755 6.38458 6.39566 6.55277 6.67232 6.83475 6.96638 7.69386 7.92708 7.96631 8.06456 8.36891 8.42652 8.63891 8.69513 9.36909 9.88160 11.35804 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.006784 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.308056 B = 4126.457724 C = 5088.170949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.353 6.353 3 C 0.073 3.927 4 C 0.054 3.946 5 N -0.539 5.539 6 C 0.170 3.830 7 C -0.520 4.520 8 H 0.046 0.954 9 C 0.066 3.934 10 N -0.891 5.891 11 Si 0.877 3.123 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.279 1.279 15 C 0.060 3.940 16 C 0.112 3.888 17 H 0.055 0.945 18 O -0.347 6.347 19 C 0.028 3.972 20 C -0.130 4.130 21 C -0.133 4.133 22 C -0.143 4.143 23 C -0.136 4.136 24 H 0.032 0.968 25 H 0.079 0.921 26 H 0.027 0.973 27 H 0.034 0.966 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.255 0.745 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 12.436 -4.972 13.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C -0.004 4.004 4 C -0.075 4.075 5 N -0.263 5.263 6 C 0.045 3.955 7 C -0.559 4.559 8 H 0.064 0.936 9 C -0.134 4.134 10 N -0.531 5.531 11 Si 0.706 3.294 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.204 1.204 15 C -0.069 4.069 16 C 0.053 3.947 17 H 0.073 0.927 18 O -0.265 6.265 19 C -0.069 4.069 20 C -0.149 4.149 21 C -0.171 4.171 22 C -0.180 4.180 23 C -0.174 4.174 24 H 0.051 0.949 25 H 0.097 0.903 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.603 12.168 -5.258 13.352 hybrid contribution 0.727 -0.672 1.290 1.626 sum 2.329 11.495 -3.968 12.382 Atomic orbital electron populations 1.22639 0.83504 1.01959 0.98541 1.88349 1.17429 1.26594 1.94693 1.22466 0.94790 0.85208 0.97965 1.22023 0.93120 0.98435 0.93889 1.62618 1.16970 1.21512 1.25236 1.20320 0.97520 0.79378 0.98292 1.21591 1.26747 0.91772 1.15836 0.93623 1.24791 0.95668 0.97604 0.95368 1.69952 1.42854 1.06896 1.33366 0.86837 0.79801 0.79642 0.83128 1.21128 1.21583 1.20406 1.22025 0.91999 0.99367 0.93512 1.22036 0.92495 0.84537 0.95635 0.92672 1.88234 1.84834 1.25264 1.28126 1.22815 0.96883 1.02072 0.85110 1.23082 0.99269 0.95841 0.96680 1.22895 0.99796 0.96283 0.98087 1.22838 0.98820 0.98016 0.98370 1.22972 1.00009 0.97479 0.96913 0.94940 0.90272 0.95435 0.94774 0.93839 0.92590 0.92285 0.93101 0.92153 0.93564 0.92422 0.92561 0.90423 0.94763 0.94805 0.88937 0.90207 0.91699 0.90537 0.91947 0.91613 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.52 7.72 -35.23 -0.27 -7.79 16 3 C 0.07 1.33 6.23 37.16 0.23 1.56 16 4 C 0.05 1.06 5.36 -3.82 -0.02 1.04 16 5 N -0.54 -11.75 4.58 -236.07 -1.08 -12.83 16 6 C 0.17 4.50 4.60 -4.98 -0.02 4.47 16 7 C -0.52 -14.89 7.14 -34.44 -0.25 -15.14 16 8 H 0.05 1.31 6.11 -52.49 -0.32 0.99 16 9 C 0.07 1.96 5.45 -17.82 -0.10 1.87 16 10 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16 11 Si 0.88 22.67 29.54 -169.99 -5.02 17.64 16 12 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 14 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 15 C 0.06 1.18 4.67 -3.83 -0.02 1.16 16 16 C 0.11 1.99 2.25 -26.73 -0.06 1.93 16 17 H 0.06 0.96 7.59 -51.93 -0.39 0.56 16 18 O -0.35 -7.27 7.53 -35.23 -0.27 -7.54 16 19 C 0.03 0.48 10.56 101.05 1.07 1.55 16 20 C -0.13 -1.90 3.35 -89.81 -0.30 -2.20 16 21 C -0.13 -1.59 7.63 -25.92 -0.20 -1.79 16 22 C -0.14 -1.55 8.08 -25.89 -0.21 -1.76 16 23 C -0.14 -1.73 6.18 -25.90 -0.16 -1.89 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.26 6.12 -51.93 -0.32 0.94 16 30 H 0.06 0.98 7.64 -51.93 -0.40 0.58 16 31 H 0.05 1.47 5.35 -51.92 -0.28 1.19 16 32 H 0.06 1.74 5.41 -51.93 -0.28 1.46 16 33 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.06 1.33 6.45 -51.93 -0.33 0.99 16 35 H 0.06 0.96 7.59 -51.93 -0.39 0.56 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.03 0.49 4.94 -51.93 -0.26 0.23 16 38 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 39 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.08 0.93 7.96 -51.93 -0.41 0.51 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 1.00 6.33 -51.93 -0.33 0.67 16 LS Contribution 343.93 15.07 5.18 5.18 Total: -1.00 -32.18 343.93 -7.56 -39.74 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.92 Total: -0.18 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 1.08 Total: -7.58 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: -0.34 Total: -39.48 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.54 Total: -15.33 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.18 -7.56 -39.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595335097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.389 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds