Wall clock time and date at job start Mon Mar 30 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42895 * 113.99851 * 2 1 4 4 C 1.53002 * 109.47173 * 184.92734 * 3 2 1 5 5 N 1.46899 * 109.47081 * 66.84756 * 4 3 2 6 6 C 1.46897 * 111.00304 * 286.69508 * 5 4 3 7 7 C 1.50700 * 109.46994 * 299.24871 * 6 5 4 8 8 H 1.07994 * 119.99769 * 4.65900 * 7 6 5 9 9 C 1.37878 * 119.99613 * 184.66879 * 7 6 5 10 10 N 1.31508 * 120.00196 * 5.03864 * 9 7 6 11 11 Si 1.86798 * 119.99744 * 185.04051 * 9 7 6 12 12 H 1.48498 * 109.47353 * 94.99635 * 11 9 7 13 13 H 1.48497 * 109.47137 * 214.99704 * 11 9 7 14 14 H 1.48503 * 109.47026 * 334.99429 * 11 9 7 15 15 C 1.46905 * 110.99866 * 162.73844 * 5 4 3 16 16 C 1.52993 * 109.47091 * 201.32219 * 15 5 4 17 17 H 1.08999 * 109.47479 * 52.94547 * 16 15 5 18 18 O 1.42908 * 109.47255 * 292.94891 * 16 15 5 19 19 C 1.42899 * 114.00339 * 150.00381 * 18 16 15 20 20 C 1.53002 * 109.47218 * 172.95020 * 16 15 5 21 21 C 1.53783 * 113.61014 * 277.49663 * 20 16 15 22 22 C 1.53785 * 87.07991 * 220.01842 * 21 20 16 23 23 C 1.53776 * 113.61498 * 179.97438 * 20 16 15 24 24 H 1.09001 * 109.47046 * 64.97988 * 1 2 3 25 25 H 1.09004 * 109.46736 * 184.97350 * 1 2 3 26 26 H 1.09001 * 109.47183 * 304.97085 * 1 2 3 27 27 H 1.09000 * 109.47001 * 64.92340 * 3 2 1 28 28 H 1.09006 * 109.47257 * 304.93064 * 3 2 1 29 29 H 1.08998 * 109.46710 * 306.84769 * 4 3 2 30 30 H 1.09003 * 109.46643 * 186.84768 * 4 3 2 31 31 H 1.09008 * 109.46715 * 59.24620 * 6 5 4 32 32 H 1.08992 * 109.47165 * 179.24145 * 6 5 4 33 33 H 0.97001 * 120.00103 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.46377 * 81.32097 * 15 5 4 35 35 H 1.09000 * 109.46950 * 321.32212 * 15 5 4 36 36 H 1.08994 * 109.47374 * 180.02562 * 19 18 16 37 37 H 1.08998 * 109.46833 * 59.99329 * 19 18 16 38 38 H 1.09003 * 109.46616 * 299.99648 * 19 18 16 39 39 H 1.08998 * 112.84922 * 48.80020 * 20 16 15 40 40 H 1.08997 * 113.61679 * 334.56578 * 21 20 16 41 41 H 1.09001 * 113.61400 * 105.47179 * 21 20 16 42 42 H 1.09005 * 113.61232 * 270.88723 * 22 21 20 43 43 H 1.08996 * 113.69334 * 139.99796 * 22 21 20 44 44 H 1.08997 * 113.61694 * 254.52937 * 23 20 16 45 45 H 1.08999 * 113.61549 * 25.43043 * 23 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5306 1.1868 -0.1239 5 7 3.8737 0.6508 -1.4479 6 6 3.5578 -0.7812 -1.5341 7 6 4.3570 -1.5349 -0.5025 8 1 4.9746 -0.9966 0.2010 9 6 4.2998 -2.9118 -0.4572 10 7 3.6277 -3.5725 -1.3743 11 14 5.1770 -3.8385 0.9070 12 1 4.2224 -4.1162 2.0101 13 1 5.7046 -5.1205 0.3746 14 1 6.3015 -3.0157 1.4207 15 6 5.2863 0.8984 -1.7662 16 6 5.4870 0.8307 -3.2814 17 1 4.7784 1.4979 -3.7720 18 8 5.2704 -0.5083 -3.7313 19 6 4.7676 -0.5990 -5.0658 20 6 6.9145 1.2600 -3.6264 21 6 7.0977 2.7849 -3.7026 22 6 7.9987 2.5367 -4.9239 23 6 7.2207 1.2263 -5.1330 24 1 -0.3633 0.4346 -0.9312 25 1 -0.3633 -1.0239 0.0891 26 1 -0.3633 0.5890 0.8421 27 1 1.7601 1.8145 0.9308 28 1 1.6204 1.8767 -0.8426 29 1 3.9068 0.5159 0.6484 30 1 3.9829 2.1711 -0.0020 31 1 2.4938 -0.9303 -1.3495 32 1 3.8090 -1.1494 -2.5287 33 1 3.5871 -4.5412 -1.3422 34 1 5.9053 0.1422 -1.2834 35 1 5.5721 1.8865 -1.4056 36 1 4.6298 -1.6470 -5.3317 37 1 5.4774 -0.1394 -5.7535 38 1 3.8114 -0.0796 -5.1297 39 1 7.6663 0.7585 -3.0170 40 1 6.1802 3.3237 -3.9392 41 1 7.6274 3.2044 -2.8473 42 1 9.0477 2.3854 -4.6690 43 1 7.8583 3.2610 -5.7262 44 1 7.8497 0.3878 -5.4321 45 1 6.3369 1.3387 -5.7609 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595335097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:36 Heat of formation + Delta-G solvation = -79.900915 kcal Electronic energy + Delta-G solvation = -22819.083207 eV Core-core repulsion = 19644.291806 eV Total energy + Delta-G solvation = -3174.791400 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.59514 -39.13802 -37.85351 -36.99277 -34.38428 -31.86036 -30.22618 -28.20743 -27.19090 -26.89917 -26.37655 -25.46765 -24.16930 -22.18869 -21.31365 -20.25299 -18.48160 -17.55154 -17.41306 -17.04168 -16.66117 -16.52330 -16.06400 -15.76070 -15.47260 -15.18174 -14.96861 -14.47155 -14.29955 -13.60602 -13.47638 -13.26533 -12.99491 -12.87319 -12.80506 -12.61336 -12.53490 -12.43083 -12.18354 -12.16646 -12.01457 -11.71829 -11.56541 -11.42604 -11.32610 -11.11264 -10.98293 -10.49998 -10.24545 -9.73630 -8.82556 -7.94088 -6.03130 1.35955 1.36776 1.45564 2.47631 3.09724 3.17000 3.33696 3.42764 3.80892 3.90210 3.95426 4.09179 4.32274 4.34999 4.44654 4.51900 4.54679 4.60542 4.62028 4.62847 4.69230 4.75342 4.82705 4.89741 4.90592 4.92401 4.93113 4.97941 5.06595 5.13087 5.17282 5.21453 5.30034 5.43321 5.64734 5.65322 5.79819 6.19496 6.34764 6.47785 6.57676 6.67670 6.82905 7.17922 7.59778 9.09332 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.006784 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.308056 B = 4126.457724 C = 5088.170949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.401 6.401 3 C 0.073 3.927 4 C 0.050 3.950 5 N -0.536 5.536 6 C 0.188 3.812 7 C -0.519 4.519 8 H 0.039 0.961 9 C 0.011 3.989 10 N -0.925 5.925 11 Si 0.939 3.061 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.061 3.939 16 C 0.114 3.886 17 H 0.062 0.938 18 O -0.390 6.390 19 C 0.029 3.971 20 C -0.138 4.138 21 C -0.125 4.125 22 C -0.130 4.130 23 C -0.137 4.137 24 H 0.043 0.957 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.023 0.977 30 H 0.097 0.903 31 H 0.028 0.972 32 H 0.035 0.965 33 H 0.255 0.745 34 H 0.018 0.982 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.405 14.718 -4.928 15.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.320 6.320 3 C -0.004 4.004 4 C -0.078 4.078 5 N -0.259 5.259 6 C 0.062 3.938 7 C -0.559 4.559 8 H 0.057 0.943 9 C -0.187 4.187 10 N -0.566 5.566 11 Si 0.766 3.234 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.198 1.198 15 C -0.067 4.067 16 C 0.056 3.944 17 H 0.080 0.920 18 O -0.309 6.309 19 C -0.068 4.068 20 C -0.157 4.157 21 C -0.162 4.162 22 C -0.167 4.167 23 C -0.174 4.174 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.115 0.885 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.215 14.476 -5.208 15.543 hybrid contribution 0.506 -1.328 1.284 1.915 sum 2.721 13.148 -3.924 13.988 Atomic orbital electron populations 1.22764 0.81382 1.02324 1.00339 1.88262 1.20001 1.28666 1.95073 1.22566 0.93379 0.84445 0.99972 1.22187 0.94837 0.99277 0.91510 1.62566 1.18269 1.18414 1.26635 1.19876 0.95675 0.82015 0.96196 1.21846 1.26173 0.92116 1.15756 0.94294 1.25552 0.96783 0.98705 0.97613 1.70080 1.44470 1.07026 1.35061 0.85849 0.78834 0.78350 0.80387 1.20565 1.21168 1.19814 1.22123 0.89986 0.99635 0.95003 1.22118 0.94720 0.83476 0.94097 0.91973 1.88160 1.85293 1.27388 1.30071 1.22885 0.97697 1.01859 0.84318 1.23058 0.96531 0.98105 0.98003 1.22891 1.00539 0.93736 0.99051 1.22784 0.98728 0.96917 0.98273 1.22987 1.00525 0.98669 0.95258 0.93858 0.90964 0.92552 0.91715 0.92699 0.95912 0.88523 0.95469 0.94695 0.93629 0.96361 0.89373 0.91456 0.91727 0.94706 0.90611 0.89412 0.90789 0.89836 0.90016 0.92120 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 11.01 113.37 1.25 2.16 16 2 O -0.40 -17.10 7.72 -148.98 -1.15 -18.25 16 3 C 0.07 2.54 6.23 71.98 0.45 2.99 16 4 C 0.05 1.94 5.36 86.30 0.46 2.40 16 5 N -0.54 -23.39 4.58 -900.80 -4.12 -27.51 16 6 C 0.19 10.33 4.60 85.56 0.39 10.72 16 7 C -0.52 -30.64 7.14 25.60 0.18 -30.45 16 8 H 0.04 2.30 6.11 -2.91 -0.02 2.28 16 9 C 0.01 0.66 5.45 84.66 0.46 1.12 16 10 N -0.92 -58.61 13.29 21.45 0.28 -58.33 16 11 Si 0.94 47.56 29.54 68.60 2.03 49.59 16 12 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 13 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 14 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 15 C 0.06 2.40 4.67 86.30 0.40 2.81 16 16 C 0.11 4.02 2.25 30.59 0.07 4.09 16 17 H 0.06 2.08 7.59 -2.39 -0.02 2.06 16 18 O -0.39 -16.79 7.53 -148.98 -1.12 -17.91 16 19 C 0.03 0.99 10.56 113.37 1.20 2.19 16 20 C -0.14 -3.88 3.35 -10.27 -0.03 -3.91 16 21 C -0.12 -2.61 7.63 31.12 0.24 -2.37 16 22 C -0.13 -2.40 8.08 31.14 0.25 -2.15 16 23 C -0.14 -3.22 6.18 31.13 0.19 -3.03 16 24 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.02 1.03 6.12 -2.39 -0.01 1.01 16 30 H 0.10 2.95 7.64 -2.39 -0.02 2.93 16 31 H 0.03 1.64 5.35 -2.38 -0.01 1.63 16 32 H 0.04 2.11 5.41 -2.39 -0.01 2.09 16 33 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 34 H 0.02 0.86 6.45 -2.39 -0.02 0.84 16 35 H 0.09 2.85 7.59 -2.39 -0.02 2.83 16 36 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.06 1.78 4.94 -2.39 -0.01 1.77 16 38 H 0.03 1.16 8.09 -2.39 -0.02 1.14 16 39 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.09 1.73 7.96 -2.39 -0.02 1.71 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.09 1.91 6.33 -2.39 -0.02 1.90 16 Total: -1.00 -71.99 343.93 2.37 -69.61 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.94 Total: 16.26 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 5.51 Total: -13.46 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -3.84 Total: -85.84 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -2.27 Total: -36.16 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -71.99 2.37 -69.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595335097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.289 kcal (2) G-P(sol) polarization free energy of solvation -71.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds