Wall clock time and date at job start Mon Mar 30 2020 06:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99742 * 2 1 4 4 C 1.53004 * 109.46877 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47039 * 65.00367 * 4 3 2 6 6 C 1.36942 * 119.99555 * 267.95337 * 5 4 3 7 7 H 1.07992 * 120.00119 * 327.00476 * 6 5 4 8 8 C 1.38814 * 119.99745 * 147.00052 * 6 5 4 9 9 N 1.31620 * 119.99786 * 337.27355 * 8 6 5 10 10 Si 1.86793 * 119.99863 * 157.27049 * 8 6 5 11 11 H 1.48504 * 109.47178 * 90.00518 * 10 8 6 12 12 H 1.48507 * 109.47190 * 210.00075 * 10 8 6 13 13 H 1.48498 * 109.47245 * 330.00305 * 10 8 6 14 14 C 1.46502 * 120.00507 * 87.96422 * 5 4 3 15 15 C 1.52992 * 109.47383 * 84.26417 * 14 5 4 16 16 H 1.08994 * 109.47709 * 305.66888 * 15 14 5 17 17 O 1.42904 * 109.46824 * 65.66839 * 15 14 5 18 18 C 1.42905 * 114.00002 * 244.55560 * 17 15 14 19 19 C 1.52999 * 109.47138 * 185.66263 * 15 14 5 20 20 C 1.54264 * 110.03573 * 297.91183 * 19 15 14 21 21 C 1.54958 * 104.16241 * 217.13600 * 20 19 15 22 22 C 1.54893 * 102.77838 * 37.88454 * 21 20 19 23 23 C 1.53874 * 110.03344 * 180.69299 * 19 15 14 24 24 H 1.08998 * 109.47217 * 299.99591 * 1 2 3 25 25 H 1.08994 * 109.47341 * 60.00093 * 1 2 3 26 26 H 1.09005 * 109.46696 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47254 * 60.00254 * 3 2 1 28 28 H 1.09004 * 109.46811 * 299.99935 * 3 2 1 29 29 H 1.09000 * 109.47299 * 304.99620 * 4 3 2 30 30 H 1.09006 * 109.46630 * 185.00134 * 4 3 2 31 31 H 0.97002 * 119.99545 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.46405 * 324.26514 * 14 5 4 33 33 H 1.09001 * 109.46993 * 204.27131 * 14 5 4 34 34 H 1.09008 * 109.46749 * 302.21742 * 18 17 15 35 35 H 1.08997 * 109.47146 * 62.20967 * 18 17 15 36 36 H 1.08998 * 109.47456 * 182.21754 * 18 17 15 37 37 H 1.08998 * 110.01494 * 59.30355 * 19 15 14 38 38 H 1.08997 * 110.48143 * 335.78454 * 20 19 15 39 39 H 1.09001 * 110.48770 * 98.42125 * 20 19 15 40 40 H 1.09005 * 110.72088 * 279.57189 * 21 20 19 41 41 H 1.08996 * 110.92771 * 156.29952 * 21 20 19 42 42 H 1.08997 * 110.48491 * 203.40446 * 22 21 20 43 43 H 1.09004 * 110.59351 * 80.82098 * 22 21 20 44 44 H 1.08996 * 110.03308 * 238.56998 * 23 19 15 45 45 H 1.09003 * 110.03047 * 359.95300 * 23 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1370 -0.7935 -1.3244 7 1 4.4672 -1.3446 -0.4564 8 6 3.8760 -1.4616 -2.5129 9 7 3.0762 -0.9229 -3.4087 10 14 4.6599 -3.1251 -2.8407 11 1 3.7716 -4.2001 -2.3304 12 1 4.8587 -3.2993 -4.3021 13 1 5.9726 -3.1983 -2.1504 14 6 4.2434 1.3971 -2.4281 15 6 5.6696 1.9453 -2.3506 16 1 5.8097 2.4607 -1.4005 17 8 6.6008 0.8657 -2.4487 18 6 7.3878 0.6683 -1.2723 19 6 5.9024 2.9257 -3.5019 20 6 5.7589 2.1969 -4.8539 21 6 6.8437 2.8447 -5.7509 22 6 8.0208 3.0562 -4.7665 23 6 7.3398 3.4722 -3.4464 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8515 0.5683 0.8410 30 1 3.9784 2.1766 0.0890 31 1 2.8941 -1.3897 -4.2393 32 1 3.5363 2.2262 -2.4546 33 1 4.1334 0.7968 -3.3313 34 1 7.9323 1.5841 -1.0416 35 1 6.7354 0.4135 -0.4372 36 1 8.0961 -0.1429 -1.4409 37 1 5.1882 3.7469 -3.4428 38 1 5.9498 1.1304 -4.7345 39 1 4.7667 2.3630 -5.2735 40 1 6.4965 3.7985 -6.1483 41 1 7.1322 2.1732 -6.5596 42 1 8.6785 3.8489 -5.1230 43 1 8.5794 2.1298 -4.6322 44 1 7.3231 4.5587 -3.3612 45 1 7.8712 3.0396 -2.5987 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595524579.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:10 Heat of formation + Delta-G solvation = -78.506708 kcal Electronic energy + Delta-G solvation = -23163.006302 eV Core-core repulsion = 19988.275359 eV Total energy + Delta-G solvation = -3174.730943 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -38.71799 -37.07487 -36.00828 -34.77277 -31.36987 -30.63893 -28.40001 -28.17149 -26.23192 -25.53837 -25.45316 -23.19267 -21.96632 -20.34442 -19.68628 -18.95088 -16.63961 -15.79545 -15.59283 -15.45483 -15.01971 -14.72820 -14.52827 -13.99953 -13.86175 -13.53158 -13.30175 -12.95590 -12.80297 -12.33638 -11.99620 -11.66886 -11.34620 -11.15573 -10.90536 -10.79418 -10.72551 -10.66351 -10.57542 -10.47803 -10.32664 -10.22391 -10.15151 -9.96109 -9.79023 -9.71355 -9.42666 -8.74092 -8.56425 -8.18452 -6.39700 -5.54178 -3.02147 3.53464 3.59798 3.63827 4.67783 4.71240 4.74807 5.00522 5.15067 5.16886 5.49631 5.61743 5.77599 5.78126 5.83546 5.92674 5.93852 5.95786 6.02390 6.07710 6.10660 6.16707 6.21244 6.24019 6.24797 6.25155 6.32986 6.36340 6.43405 6.49654 6.51024 6.58778 6.66496 6.73624 6.85357 6.89353 7.01702 7.07298 7.86877 8.02039 8.14108 8.28447 8.73771 9.40478 10.05281 10.57514 11.49514 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016307 B = 0.007263 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.654664 B = 3854.315560 C = 4571.562530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.352 6.352 3 C 0.047 3.953 4 C 0.142 3.858 5 N -0.573 5.573 6 C -0.223 4.223 7 H 0.056 0.944 8 C 0.017 3.983 9 N -0.891 5.891 10 Si 0.891 3.109 11 H -0.293 1.293 12 H -0.293 1.293 13 H -0.281 1.281 14 C 0.132 3.868 15 C 0.081 3.919 16 H 0.037 0.963 17 O -0.358 6.358 18 C 0.046 3.954 19 C -0.098 4.098 20 C -0.109 4.109 21 C -0.125 4.125 22 C -0.118 4.118 23 C -0.114 4.114 24 H 0.022 0.978 25 H 0.031 0.969 26 H 0.074 0.926 27 H 0.018 0.982 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.248 0.752 32 H 0.021 0.979 33 H 0.117 0.883 34 H 0.017 0.983 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.185 8.938 1.412 9.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C -0.033 4.033 4 C 0.015 3.985 5 N -0.292 5.292 6 C -0.353 4.353 7 H 0.074 0.926 8 C -0.181 4.181 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.221 1.221 12 H -0.219 1.219 13 H -0.207 1.207 14 C 0.006 3.994 15 C 0.020 3.980 16 H 0.055 0.945 17 O -0.276 6.276 18 C -0.051 4.051 19 C -0.117 4.117 20 C -0.147 4.147 21 C -0.162 4.162 22 C -0.156 4.156 23 C -0.152 4.152 24 H 0.040 0.960 25 H 0.050 0.950 26 H 0.093 0.907 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.134 0.866 34 H 0.035 0.965 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.264 8.576 1.103 9.640 hybrid contribution -0.021 -0.378 0.081 0.387 sum 4.243 8.198 1.184 9.307 Atomic orbital electron populations 1.22566 0.83865 1.01484 0.98171 1.88156 1.16934 1.27113 1.94778 1.23327 0.98247 0.84686 0.97024 1.21038 0.89540 0.96103 0.91797 1.43773 1.75147 1.03444 1.06815 1.18765 1.36967 0.82386 0.97148 0.92647 1.24822 0.97349 0.96824 0.99139 1.69974 1.34981 1.38925 1.09601 0.86491 0.79580 0.84814 0.76948 1.22072 1.21909 1.20671 1.21391 0.88859 0.93812 0.95368 1.22954 0.93284 0.87016 0.94710 0.94456 1.87888 1.51991 1.52367 1.35322 1.22568 0.94342 0.98314 0.89894 1.22065 0.95884 0.97196 0.96591 1.22296 0.97668 1.01243 0.93447 1.22502 0.96269 0.99860 0.97596 1.22273 0.97345 1.00573 0.95373 1.22118 0.96211 0.98981 0.97885 0.95993 0.95031 0.90738 0.96367 0.94612 0.93100 0.93730 0.94208 0.96026 0.86594 0.96493 0.93662 0.91484 0.91349 0.89905 0.92214 0.92470 0.92279 0.92920 0.91687 0.93054 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 11.01 101.05 1.11 1.77 16 2 O -0.35 -8.02 10.27 -35.23 -0.36 -8.39 16 3 C 0.05 0.95 6.28 37.16 0.23 1.18 16 4 C 0.14 2.97 6.11 -4.04 -0.02 2.94 16 5 N -0.57 -13.83 2.39 -173.24 -0.41 -14.25 16 6 C -0.22 -6.07 8.91 -15.06 -0.13 -6.20 16 7 H 0.06 1.55 7.93 -52.49 -0.42 1.14 16 8 C 0.02 0.48 4.91 -17.43 -0.09 0.39 16 9 N -0.89 -25.82 11.31 55.49 0.63 -25.19 16 10 Si 0.89 22.67 29.61 -169.99 -5.03 17.64 16 11 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 12 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 13 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 14 C 0.13 3.02 4.61 -4.04 -0.02 3.01 16 15 C 0.08 1.56 2.02 -26.74 -0.05 1.51 16 16 H 0.04 0.70 7.52 -51.93 -0.39 0.31 16 17 O -0.36 -7.47 8.65 -35.23 -0.30 -7.77 16 18 C 0.05 0.83 10.48 101.05 1.06 1.89 16 19 C -0.10 -1.63 2.83 -89.50 -0.25 -1.88 16 20 C -0.11 -1.88 5.31 -25.04 -0.13 -2.02 16 21 C -0.12 -1.78 6.91 -24.70 -0.17 -1.95 16 22 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 23 C -0.11 -1.66 6.21 -25.62 -0.16 -1.82 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 1.07 8.02 -51.93 -0.42 0.65 16 30 H 0.04 0.81 8.00 -51.93 -0.42 0.40 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.02 0.48 8.11 -51.93 -0.42 0.06 16 33 H 0.12 3.05 4.57 -51.93 -0.24 2.82 16 34 H 0.02 0.26 7.25 -51.92 -0.38 -0.12 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.70 7.02 -51.93 -0.36 1.33 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.91 6.30 -51.93 -0.33 0.58 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -30.03 353.01 -7.39 -37.42 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -8.42 Total: -1.80 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 1.20 Total: -2.97 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.21 Total: -39.44 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.67 Total: -16.16 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.03 -7.39 -37.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595524579.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.090 kcal (2) G-P(sol) polarization free energy of solvation -30.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds