Wall clock time and date at job start Mon Mar 30 2020 06:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99742 * 2 1 4 4 C 1.53004 * 109.46877 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47039 * 65.00367 * 4 3 2 6 6 C 1.36942 * 119.99555 * 267.95337 * 5 4 3 7 7 H 1.07992 * 120.00119 * 327.00476 * 6 5 4 8 8 C 1.38814 * 119.99745 * 147.00052 * 6 5 4 9 9 N 1.31620 * 119.99786 * 337.27355 * 8 6 5 10 10 Si 1.86793 * 119.99863 * 157.27049 * 8 6 5 11 11 H 1.48504 * 109.47178 * 90.00518 * 10 8 6 12 12 H 1.48507 * 109.47190 * 210.00075 * 10 8 6 13 13 H 1.48498 * 109.47245 * 330.00305 * 10 8 6 14 14 C 1.46502 * 120.00507 * 87.96422 * 5 4 3 15 15 C 1.52992 * 109.47383 * 84.26417 * 14 5 4 16 16 H 1.08994 * 109.47709 * 305.66888 * 15 14 5 17 17 O 1.42904 * 109.46824 * 65.66839 * 15 14 5 18 18 C 1.42905 * 114.00002 * 244.55560 * 17 15 14 19 19 C 1.52999 * 109.47138 * 185.66263 * 15 14 5 20 20 C 1.54264 * 110.03573 * 297.91183 * 19 15 14 21 21 C 1.54958 * 104.16241 * 217.13600 * 20 19 15 22 22 C 1.54893 * 102.77838 * 37.88454 * 21 20 19 23 23 C 1.53874 * 110.03344 * 180.69299 * 19 15 14 24 24 H 1.08998 * 109.47217 * 299.99591 * 1 2 3 25 25 H 1.08994 * 109.47341 * 60.00093 * 1 2 3 26 26 H 1.09005 * 109.46696 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47254 * 60.00254 * 3 2 1 28 28 H 1.09004 * 109.46811 * 299.99935 * 3 2 1 29 29 H 1.09000 * 109.47299 * 304.99620 * 4 3 2 30 30 H 1.09006 * 109.46630 * 185.00134 * 4 3 2 31 31 H 0.97002 * 119.99545 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.46405 * 324.26514 * 14 5 4 33 33 H 1.09001 * 109.46993 * 204.27131 * 14 5 4 34 34 H 1.09008 * 109.46749 * 302.21742 * 18 17 15 35 35 H 1.08997 * 109.47146 * 62.20967 * 18 17 15 36 36 H 1.08998 * 109.47456 * 182.21754 * 18 17 15 37 37 H 1.08998 * 110.01494 * 59.30355 * 19 15 14 38 38 H 1.08997 * 110.48143 * 335.78454 * 20 19 15 39 39 H 1.09001 * 110.48770 * 98.42125 * 20 19 15 40 40 H 1.09005 * 110.72088 * 279.57189 * 21 20 19 41 41 H 1.08996 * 110.92771 * 156.29952 * 21 20 19 42 42 H 1.08997 * 110.48491 * 203.40446 * 22 21 20 43 43 H 1.09004 * 110.59351 * 80.82098 * 22 21 20 44 44 H 1.08996 * 110.03308 * 238.56998 * 23 19 15 45 45 H 1.09003 * 110.03047 * 359.95300 * 23 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1370 -0.7935 -1.3244 7 1 4.4672 -1.3446 -0.4564 8 6 3.8760 -1.4616 -2.5129 9 7 3.0762 -0.9229 -3.4087 10 14 4.6599 -3.1251 -2.8407 11 1 3.7716 -4.2001 -2.3304 12 1 4.8587 -3.2993 -4.3021 13 1 5.9726 -3.1983 -2.1504 14 6 4.2434 1.3971 -2.4281 15 6 5.6696 1.9453 -2.3506 16 1 5.8097 2.4607 -1.4005 17 8 6.6008 0.8657 -2.4487 18 6 7.3878 0.6683 -1.2723 19 6 5.9024 2.9257 -3.5019 20 6 5.7589 2.1969 -4.8539 21 6 6.8437 2.8447 -5.7509 22 6 8.0208 3.0562 -4.7665 23 6 7.3398 3.4722 -3.4464 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8515 0.5683 0.8410 30 1 3.9784 2.1766 0.0890 31 1 2.8941 -1.3897 -4.2393 32 1 3.5363 2.2262 -2.4546 33 1 4.1334 0.7968 -3.3313 34 1 7.9323 1.5841 -1.0416 35 1 6.7354 0.4135 -0.4372 36 1 8.0961 -0.1429 -1.4409 37 1 5.1882 3.7469 -3.4428 38 1 5.9498 1.1304 -4.7345 39 1 4.7667 2.3630 -5.2735 40 1 6.4965 3.7985 -6.1483 41 1 7.1322 2.1732 -6.5596 42 1 8.6785 3.8489 -5.1230 43 1 8.5794 2.1298 -4.6322 44 1 7.3231 4.5587 -3.3612 45 1 7.8712 3.0396 -2.5987 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595524579.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:10 Heat of formation + Delta-G solvation = -95.978422 kcal Electronic energy + Delta-G solvation = -23163.763932 eV Core-core repulsion = 19988.275359 eV Total energy + Delta-G solvation = -3175.488573 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.16095 -38.69572 -37.45281 -36.55768 -33.38217 -32.11245 -29.97485 -29.49602 -27.78634 -27.15200 -26.98779 -25.01769 -23.53412 -21.76223 -21.20596 -20.32120 -18.58543 -17.32717 -17.18579 -16.91576 -16.64581 -16.38398 -16.04453 -15.70674 -15.38276 -15.17928 -14.92213 -14.64450 -14.02230 -13.73967 -13.62081 -13.21430 -13.08759 -12.85917 -12.63018 -12.56465 -12.33144 -12.11814 -12.06777 -11.92652 -11.84605 -11.72461 -11.59162 -11.50630 -11.34985 -11.30925 -11.04657 -10.38583 -10.30517 -10.05996 -8.38853 -7.63700 -5.13298 1.46478 1.49836 1.57186 2.63569 3.19381 3.24926 3.50351 3.66004 3.84409 3.94990 4.03506 4.37877 4.42120 4.47740 4.55870 4.58276 4.60945 4.66367 4.69105 4.71045 4.76480 4.78916 4.82805 4.88613 4.91289 4.92667 4.96846 5.03053 5.09570 5.14926 5.17635 5.21993 5.30146 5.35536 5.52200 5.58876 5.67959 5.81869 5.99876 6.54932 6.64383 6.81554 7.36450 8.06012 8.53033 9.34989 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016307 B = 0.007263 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.654664 B = 3854.315560 C = 4571.562530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.051 3.949 4 C 0.138 3.862 5 N -0.584 5.584 6 C -0.211 4.211 7 H 0.043 0.957 8 C -0.028 4.028 9 N -0.915 5.915 10 Si 0.934 3.066 11 H -0.295 1.295 12 H -0.299 1.299 13 H -0.277 1.277 14 C 0.135 3.865 15 C 0.091 3.909 16 H 0.048 0.952 17 O -0.383 6.383 18 C 0.046 3.954 19 C -0.096 4.096 20 C -0.110 4.110 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.109 4.109 24 H 0.055 0.945 25 H 0.026 0.974 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.021 0.979 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.240 0.760 32 H 0.021 0.979 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.202 10.937 2.199 12.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.314 6.314 3 C -0.028 4.028 4 C 0.012 3.988 5 N -0.304 5.304 6 C -0.342 4.342 7 H 0.061 0.939 8 C -0.224 4.224 9 N -0.561 5.561 10 Si 0.765 3.235 11 H -0.223 1.223 12 H -0.226 1.226 13 H -0.202 1.202 14 C 0.008 3.992 15 C 0.031 3.969 16 H 0.066 0.934 17 O -0.301 6.301 18 C -0.051 4.051 19 C -0.116 4.116 20 C -0.148 4.148 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.146 4.146 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.288 10.589 1.913 11.990 hybrid contribution -0.385 -0.980 -0.083 1.057 sum 4.904 9.609 1.830 10.942 Atomic orbital electron populations 1.22706 0.81698 1.02341 0.99486 1.88080 1.19537 1.28713 1.95094 1.23259 0.97453 0.84101 0.98027 1.21187 0.90418 0.97252 0.89922 1.43895 1.75763 1.02701 1.08081 1.18782 1.35203 0.83865 0.96375 0.93907 1.25273 0.98437 0.99108 0.99547 1.70095 1.36575 1.39805 1.09673 0.85793 0.79024 0.82441 0.76235 1.22262 1.22594 1.20213 1.21294 0.91289 0.92967 0.93607 1.22743 0.90827 0.86980 0.96388 0.93385 1.87872 1.52483 1.53201 1.36583 1.22638 0.93999 1.00075 0.88383 1.22064 0.98109 0.96654 0.94735 1.22202 0.98298 0.99191 0.95077 1.22481 0.95356 1.00479 0.97255 1.22263 0.97224 1.00924 0.94847 1.22083 0.94147 1.00330 0.98047 0.92686 0.95511 0.90271 0.92570 0.96077 0.93495 0.90768 0.95045 0.96115 0.90030 0.93519 0.95413 0.90834 0.90127 0.93940 0.93305 0.90421 0.92151 0.90182 0.93010 0.90548 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.20 11.01 113.37 1.25 2.45 16 2 O -0.40 -17.81 10.27 -148.98 -1.53 -19.34 16 3 C 0.05 1.98 6.28 71.98 0.45 2.43 16 4 C 0.14 5.61 6.11 86.38 0.53 6.14 16 5 N -0.58 -28.34 2.39 -702.00 -1.68 -30.02 16 6 C -0.21 -11.68 8.91 84.03 0.75 -10.93 16 7 H 0.04 2.45 7.93 -2.91 -0.02 2.42 16 8 C -0.03 -1.61 4.91 84.86 0.42 -1.19 16 9 N -0.91 -54.86 11.31 21.65 0.24 -54.62 16 10 Si 0.93 47.70 29.61 68.60 2.03 49.73 16 11 H -0.29 -15.00 7.11 99.48 0.71 -14.29 16 12 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 13 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 14 C 0.13 6.22 4.61 86.38 0.40 6.62 16 15 C 0.09 3.44 2.02 30.59 0.06 3.50 16 16 H 0.05 1.71 7.52 -2.39 -0.02 1.69 16 17 O -0.38 -15.90 8.65 -148.98 -1.29 -17.19 16 18 C 0.05 1.60 10.48 113.37 1.19 2.79 16 19 C -0.10 -3.06 2.83 -10.07 -0.03 -3.09 16 20 C -0.11 -3.81 5.31 31.69 0.17 -3.64 16 21 C -0.12 -3.16 6.91 31.91 0.22 -2.94 16 22 C -0.12 -2.85 6.83 31.67 0.22 -2.64 16 23 C -0.11 -2.81 6.21 31.32 0.19 -2.62 16 24 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 25 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 1.93 8.02 -2.39 -0.02 1.91 16 30 H 0.07 2.53 8.00 -2.38 -0.02 2.51 16 31 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.02 0.93 8.11 -2.39 -0.02 0.91 16 33 H 0.08 4.45 4.57 -2.39 -0.01 4.44 16 34 H 0.05 1.34 7.25 -2.38 -0.02 1.32 16 35 H 0.03 1.04 8.14 -2.39 -0.02 1.03 16 36 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.04 1.80 7.02 -2.39 -0.02 1.79 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 40 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 43 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 44 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.06 1.51 6.30 -2.39 -0.02 1.49 16 Total: -1.00 -66.17 353.01 4.51 -61.66 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.92 Total: 12.90 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 5.81 Total: -3.13 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -1.43 Total: -84.64 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -2.82 Total: -36.53 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -66.17 4.51 -61.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595524579.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.317 kcal (2) G-P(sol) polarization free energy of solvation -66.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds