Wall clock time and date at job start Mon Mar 30 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99878 * 2 1 4 4 C 1.52995 * 109.46997 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47075 * 65.00424 * 4 3 2 6 6 C 1.36931 * 119.99671 * 275.67406 * 5 4 3 7 7 H 1.08000 * 120.00435 * 38.66201 * 6 5 4 8 8 C 1.38814 * 119.99955 * 218.65724 * 6 5 4 9 9 N 1.31616 * 119.99991 * 20.64023 * 8 6 5 10 10 Si 1.86803 * 120.00230 * 200.64137 * 8 6 5 11 11 H 1.48503 * 109.46838 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47109 * 119.99595 * 10 8 6 13 13 H 1.48502 * 109.47071 * 240.00075 * 10 8 6 14 14 C 1.46499 * 119.99942 * 95.67304 * 5 4 3 15 15 C 1.52997 * 109.46919 * 268.13260 * 14 5 4 16 16 H 1.08999 * 109.47125 * 55.57409 * 15 14 5 17 17 O 1.42901 * 109.47499 * 295.56782 * 15 14 5 18 18 C 1.42909 * 113.99595 * 114.59265 * 17 15 14 19 19 C 1.53008 * 109.47212 * 175.57148 * 15 14 5 20 20 C 1.54266 * 110.03226 * 293.06315 * 19 15 14 21 21 C 1.54887 * 104.19714 * 217.10629 * 20 19 15 22 22 C 1.54884 * 102.74913 * 37.93653 * 21 20 19 23 23 C 1.53870 * 110.03374 * 175.89397 * 19 15 14 24 24 H 1.09000 * 109.47176 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47180 * 300.00017 * 1 2 3 26 26 H 1.09003 * 109.47091 * 59.99595 * 1 2 3 27 27 H 1.08998 * 109.47142 * 60.00203 * 3 2 1 28 28 H 1.08998 * 109.47076 * 300.00264 * 3 2 1 29 29 H 1.08998 * 109.47814 * 305.00428 * 4 3 2 30 30 H 1.09003 * 109.47079 * 185.00116 * 4 3 2 31 31 H 0.97000 * 120.00060 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.46644 * 148.13744 * 14 5 4 33 33 H 1.08991 * 109.47084 * 28.13744 * 14 5 4 34 34 H 1.09000 * 109.46944 * 296.23581 * 18 17 15 35 35 H 1.09001 * 109.46657 * 176.23725 * 18 17 15 36 36 H 1.09000 * 109.47061 * 56.23453 * 18 17 15 37 37 H 1.09001 * 110.01352 * 54.49734 * 19 15 14 38 38 H 1.09007 * 110.48313 * 335.77798 * 20 19 15 39 39 H 1.08998 * 110.48955 * 98.42120 * 20 19 15 40 40 H 1.09004 * 110.74824 * 279.62737 * 21 20 19 41 41 H 1.08992 * 110.91718 * 156.33254 * 21 20 19 42 42 H 1.09001 * 110.48918 * 203.38401 * 22 21 20 43 43 H 1.09007 * 110.59871 * 80.79654 * 22 21 20 44 44 H 1.09002 * 110.03048 * 238.56808 * 23 19 15 45 45 H 1.09002 * 110.03327 * 359.97438 * 23 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 3.9867 -0.7998 -1.3725 7 1 3.1911 -1.3866 -0.9377 8 6 5.0195 -1.4283 -2.0546 9 7 6.1667 -0.8072 -2.2290 10 14 4.7811 -3.1555 -2.7250 11 1 3.4122 -3.6289 -2.3978 12 1 4.9623 -3.1437 -4.1989 13 1 5.7796 -4.0671 -2.1107 14 6 4.4071 1.4026 -2.3724 15 6 3.2113 1.6900 -3.2826 16 1 2.4089 2.1392 -2.6974 17 8 2.7507 0.4686 -3.8640 18 6 1.4384 0.0854 -3.4477 19 6 3.6350 2.6549 -4.3920 20 6 3.9697 4.0360 -3.7918 21 6 3.4479 5.0445 -4.8452 22 6 2.1386 4.3788 -5.3365 23 6 2.4708 2.8728 -5.3741 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8508 0.5685 0.8426 30 1 3.9784 2.1766 0.0902 31 1 6.8883 -1.2462 -2.7060 32 1 5.1788 0.8823 -2.9398 33 1 4.8075 2.3418 -1.9910 34 1 1.4407 -0.1129 -2.3759 35 1 1.1358 -0.8145 -3.9832 36 1 0.7380 0.8914 -3.6666 37 1 4.5009 2.2574 -4.9215 38 1 3.4527 4.1747 -2.8421 39 1 5.0463 4.1443 -3.6605 40 1 4.1589 5.1495 -5.6646 41 1 3.2414 6.0124 -4.3885 42 1 1.8789 4.7371 -6.3326 43 1 1.3243 4.5725 -4.6381 44 1 2.7719 2.5819 -6.3805 45 1 1.6040 2.2909 -5.0608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595524580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:14 Heat of formation + Delta-G solvation = -82.434004 kcal Electronic energy + Delta-G solvation = -23478.835165 eV Core-core repulsion = 20303.933922 eV Total energy + Delta-G solvation = -3174.901243 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -38.75874 -37.35225 -36.14971 -34.79219 -31.42145 -30.64081 -28.49221 -28.31075 -26.36037 -25.77629 -25.31384 -23.44466 -21.49794 -20.52403 -19.96989 -19.14741 -16.69818 -15.82830 -15.77997 -15.58270 -15.14188 -15.03089 -14.36506 -14.26871 -13.86482 -13.63236 -13.32283 -13.06311 -12.80733 -12.33522 -12.02718 -11.75067 -11.29310 -11.25512 -11.00261 -10.88217 -10.82744 -10.78711 -10.65920 -10.52728 -10.44154 -10.40466 -10.27125 -10.05563 -9.90837 -9.70478 -9.49232 -8.95390 -8.45129 -8.19352 -6.33010 -5.54191 -3.11734 3.53188 3.60977 3.64070 4.46579 4.64649 4.68997 4.91632 4.95893 5.13508 5.42447 5.57581 5.63430 5.65660 5.68761 5.74497 5.80892 5.84012 5.85447 5.92411 5.96349 5.98600 6.08125 6.10183 6.13682 6.17488 6.25977 6.31631 6.33054 6.45523 6.49896 6.55530 6.61112 6.75066 6.81600 6.87695 6.88825 7.02806 7.81096 7.84973 8.15837 8.33772 8.80021 9.42860 10.04801 10.60505 11.46677 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.008145 C = 0.006657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.776006 B = 3436.904736 C = 4204.903563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.043 3.957 4 C 0.143 3.857 5 N -0.573 5.573 6 C -0.227 4.227 7 H 0.067 0.933 8 C 0.015 3.985 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.296 1.296 14 C 0.133 3.867 15 C 0.085 3.915 16 H 0.038 0.962 17 O -0.361 6.361 18 C 0.038 3.962 19 C -0.100 4.100 20 C -0.114 4.114 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.114 4.114 24 H 0.077 0.923 25 H 0.028 0.972 26 H 0.030 0.970 27 H 0.026 0.974 28 H 0.034 0.966 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.249 0.751 32 H 0.101 0.899 33 H 0.030 0.970 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.010 9.846 -1.851 13.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C -0.037 4.037 4 C 0.015 3.985 5 N -0.292 5.292 6 C -0.357 4.357 7 H 0.084 0.916 8 C -0.183 4.183 9 N -0.540 5.540 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.224 1.224 14 C 0.006 3.994 15 C 0.025 3.975 16 H 0.057 0.943 17 O -0.279 6.279 18 C -0.059 4.059 19 C -0.120 4.120 20 C -0.151 4.151 21 C -0.162 4.162 22 C -0.163 4.163 23 C -0.152 4.152 24 H 0.095 0.905 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.119 0.881 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.029 0.971 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.609 9.489 -2.036 12.973 hybrid contribution -0.674 -0.496 -0.346 0.905 sum -9.283 8.993 -2.383 13.142 Atomic orbital electron populations 1.22654 0.83816 1.01722 0.98609 1.88150 1.17059 1.27835 1.94796 1.23564 0.98521 0.84256 0.97316 1.20929 0.89231 0.96682 0.91624 1.43647 1.75649 1.02870 1.07064 1.19026 1.02877 0.81583 1.32212 0.91584 1.25073 0.94346 0.97079 1.01820 1.69979 1.02202 1.37877 1.43941 0.86386 0.77374 0.85102 0.78772 1.20317 1.21733 1.22399 1.21381 0.95296 0.93201 0.89519 1.23055 0.98150 0.84024 0.92297 0.94347 1.87879 1.30972 1.40885 1.68150 1.22720 0.84151 0.97390 1.01600 1.22062 0.98356 0.94834 0.96698 1.22359 1.00861 0.93866 0.98036 1.22489 0.97035 0.97922 0.98722 1.22378 0.97496 0.96122 1.00269 1.22111 0.98759 0.94982 0.99312 0.90479 0.95354 0.95151 0.95591 0.94772 0.92833 0.93219 0.94136 0.88138 0.95192 0.91767 0.91861 0.97102 0.90680 0.91832 0.91535 0.91791 0.92157 0.92400 0.92250 0.92391 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.71 101.05 1.08 1.51 16 2 O -0.36 -7.01 7.95 -35.23 -0.28 -7.29 16 3 C 0.04 0.77 6.11 37.15 0.23 1.00 16 4 C 0.14 2.96 6.18 -4.04 -0.02 2.93 16 5 N -0.57 -13.88 2.41 -173.24 -0.42 -14.29 16 6 C -0.23 -6.20 8.10 -15.06 -0.12 -6.32 16 7 H 0.07 1.88 6.91 -52.49 -0.36 1.52 16 8 C 0.02 0.44 4.98 -17.43 -0.09 0.35 16 9 N -0.90 -26.35 11.48 55.49 0.64 -25.71 16 10 Si 0.89 22.95 29.60 -169.99 -5.03 17.91 16 11 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 13 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 14 C 0.13 3.04 4.98 -4.04 -0.02 3.02 16 15 C 0.09 1.69 1.79 -26.73 -0.05 1.64 16 16 H 0.04 0.75 5.86 -51.93 -0.30 0.44 16 17 O -0.36 -7.99 9.03 -35.23 -0.32 -8.31 16 18 C 0.04 0.74 10.43 101.05 1.05 1.80 16 19 C -0.10 -1.70 2.70 -89.50 -0.24 -1.94 16 20 C -0.11 -1.63 5.42 -25.07 -0.14 -1.77 16 21 C -0.12 -1.50 6.91 -24.74 -0.17 -1.67 16 22 C -0.13 -1.55 6.83 -25.07 -0.17 -1.72 16 23 C -0.11 -1.70 6.19 -25.61 -0.16 -1.86 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.62 6.51 -51.93 -0.34 0.28 16 29 H 0.05 1.18 8.09 -51.93 -0.42 0.76 16 30 H 0.05 0.93 7.81 -51.93 -0.41 0.52 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.10 2.72 5.55 -51.93 -0.29 2.44 16 33 H 0.03 0.64 7.04 -51.93 -0.37 0.28 16 34 H 0.06 1.34 5.93 -51.93 -0.31 1.03 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.01 0.18 7.36 -51.93 -0.38 -0.20 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.06 0.91 7.77 -51.93 -0.40 0.51 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.98 6.27 -51.93 -0.33 0.65 16 LS Contribution 344.25 15.07 5.19 5.19 Total: -1.00 -30.15 344.25 -7.15 -37.30 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -8.11 Total: -1.79 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 1.18 Total: -3.01 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.22 Total: -40.01 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.60 Total: -15.60 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.03 Total: 17.91 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.15 -7.15 -37.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595524580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.135 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds