Wall clock time and date at job start Mon Mar 30 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99878 * 2 1 4 4 C 1.52995 * 109.46997 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47075 * 65.00424 * 4 3 2 6 6 C 1.36931 * 119.99671 * 275.67406 * 5 4 3 7 7 H 1.08000 * 120.00435 * 38.66201 * 6 5 4 8 8 C 1.38814 * 119.99955 * 218.65724 * 6 5 4 9 9 N 1.31616 * 119.99991 * 20.64023 * 8 6 5 10 10 Si 1.86803 * 120.00230 * 200.64137 * 8 6 5 11 11 H 1.48503 * 109.46838 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47109 * 119.99595 * 10 8 6 13 13 H 1.48502 * 109.47071 * 240.00075 * 10 8 6 14 14 C 1.46499 * 119.99942 * 95.67304 * 5 4 3 15 15 C 1.52997 * 109.46919 * 268.13260 * 14 5 4 16 16 H 1.08999 * 109.47125 * 55.57409 * 15 14 5 17 17 O 1.42901 * 109.47499 * 295.56782 * 15 14 5 18 18 C 1.42909 * 113.99595 * 114.59265 * 17 15 14 19 19 C 1.53008 * 109.47212 * 175.57148 * 15 14 5 20 20 C 1.54266 * 110.03226 * 293.06315 * 19 15 14 21 21 C 1.54887 * 104.19714 * 217.10629 * 20 19 15 22 22 C 1.54884 * 102.74913 * 37.93653 * 21 20 19 23 23 C 1.53870 * 110.03374 * 175.89397 * 19 15 14 24 24 H 1.09000 * 109.47176 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47180 * 300.00017 * 1 2 3 26 26 H 1.09003 * 109.47091 * 59.99595 * 1 2 3 27 27 H 1.08998 * 109.47142 * 60.00203 * 3 2 1 28 28 H 1.08998 * 109.47076 * 300.00264 * 3 2 1 29 29 H 1.08998 * 109.47814 * 305.00428 * 4 3 2 30 30 H 1.09003 * 109.47079 * 185.00116 * 4 3 2 31 31 H 0.97000 * 120.00060 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.46644 * 148.13744 * 14 5 4 33 33 H 1.08991 * 109.47084 * 28.13744 * 14 5 4 34 34 H 1.09000 * 109.46944 * 296.23581 * 18 17 15 35 35 H 1.09001 * 109.46657 * 176.23725 * 18 17 15 36 36 H 1.09000 * 109.47061 * 56.23453 * 18 17 15 37 37 H 1.09001 * 110.01352 * 54.49734 * 19 15 14 38 38 H 1.09007 * 110.48313 * 335.77798 * 20 19 15 39 39 H 1.08998 * 110.48955 * 98.42120 * 20 19 15 40 40 H 1.09004 * 110.74824 * 279.62737 * 21 20 19 41 41 H 1.08992 * 110.91718 * 156.33254 * 21 20 19 42 42 H 1.09001 * 110.48918 * 203.38401 * 22 21 20 43 43 H 1.09007 * 110.59871 * 80.79654 * 22 21 20 44 44 H 1.09002 * 110.03048 * 238.56808 * 23 19 15 45 45 H 1.09002 * 110.03327 * 359.97438 * 23 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 3.9867 -0.7998 -1.3725 7 1 3.1911 -1.3866 -0.9377 8 6 5.0195 -1.4283 -2.0546 9 7 6.1667 -0.8072 -2.2290 10 14 4.7811 -3.1555 -2.7250 11 1 3.4122 -3.6289 -2.3978 12 1 4.9623 -3.1437 -4.1989 13 1 5.7796 -4.0671 -2.1107 14 6 4.4071 1.4026 -2.3724 15 6 3.2113 1.6900 -3.2826 16 1 2.4089 2.1392 -2.6974 17 8 2.7507 0.4686 -3.8640 18 6 1.4384 0.0854 -3.4477 19 6 3.6350 2.6549 -4.3920 20 6 3.9697 4.0360 -3.7918 21 6 3.4479 5.0445 -4.8452 22 6 2.1386 4.3788 -5.3365 23 6 2.4708 2.8728 -5.3741 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8508 0.5685 0.8426 30 1 3.9784 2.1766 0.0902 31 1 6.8883 -1.2462 -2.7060 32 1 5.1788 0.8823 -2.9398 33 1 4.8075 2.3418 -1.9910 34 1 1.4407 -0.1129 -2.3759 35 1 1.1358 -0.8145 -3.9832 36 1 0.7380 0.8914 -3.6666 37 1 4.5009 2.2574 -4.9215 38 1 3.4527 4.1747 -2.8421 39 1 5.0463 4.1443 -3.6605 40 1 4.1589 5.1495 -5.6646 41 1 3.2414 6.0124 -4.3885 42 1 1.8789 4.7371 -6.3326 43 1 1.3243 4.5725 -4.6381 44 1 2.7719 2.5819 -6.3805 45 1 1.6040 2.2909 -5.0608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595524580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:13 Heat of formation + Delta-G solvation = -100.054563 kcal Electronic energy + Delta-G solvation = -23479.599250 eV Core-core repulsion = 20303.933922 eV Total energy + Delta-G solvation = -3175.665328 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.19543 -38.74769 -37.57056 -36.59427 -33.42804 -32.08638 -30.00978 -29.49878 -27.85094 -27.26978 -26.85818 -25.20495 -23.01112 -21.99537 -21.33905 -20.47740 -18.59827 -17.33423 -17.24279 -17.16403 -16.50078 -16.29423 -16.19708 -15.69993 -15.49497 -15.20743 -14.93376 -14.49920 -14.15869 -13.80260 -13.52282 -13.26809 -12.96017 -12.71096 -12.65589 -12.62948 -12.44895 -12.11343 -12.00876 -11.90239 -11.87690 -11.84960 -11.66428 -11.58669 -11.49551 -11.38411 -11.11282 -10.37181 -10.32039 -10.04691 -8.35091 -7.63568 -5.24899 1.44375 1.49059 1.56552 2.61076 3.14598 3.20048 3.43917 3.67418 3.81047 3.89965 4.03285 4.26900 4.39330 4.47421 4.51713 4.58909 4.60574 4.65905 4.68403 4.69514 4.75018 4.77287 4.80438 4.83131 4.86992 4.91628 4.95773 5.03930 5.09758 5.14437 5.19191 5.20978 5.33039 5.35465 5.45480 5.51052 5.57588 5.85765 5.97018 6.53077 6.64999 6.81070 7.36292 8.04343 8.54643 9.30774 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.008145 C = 0.006657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.776006 B = 3436.904736 C = 4204.903563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.054 3.946 4 C 0.138 3.862 5 N -0.587 5.587 6 C -0.208 4.208 7 H 0.053 0.947 8 C -0.035 4.035 9 N -0.924 5.924 10 Si 0.937 3.063 11 H -0.272 1.272 12 H -0.300 1.300 13 H -0.297 1.297 14 C 0.136 3.864 15 C 0.097 3.903 16 H 0.048 0.952 17 O -0.391 6.391 18 C 0.040 3.960 19 C -0.101 4.101 20 C -0.112 4.112 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.112 4.112 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.242 0.758 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.038 0.962 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.130 11.741 -1.846 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.024 4.024 4 C 0.011 3.989 5 N -0.307 5.307 6 C -0.339 4.339 7 H 0.070 0.930 8 C -0.230 4.230 9 N -0.571 5.571 10 Si 0.768 3.232 11 H -0.197 1.197 12 H -0.227 1.227 13 H -0.225 1.225 14 C 0.010 3.990 15 C 0.038 3.962 16 H 0.066 0.934 17 O -0.310 6.310 18 C -0.057 4.057 19 C -0.120 4.120 20 C -0.150 4.150 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.149 4.149 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.765 11.396 -2.014 15.806 hybrid contribution -0.066 -1.074 -0.275 1.111 sum -10.831 10.322 -2.290 15.136 Atomic orbital electron populations 1.22816 0.81378 1.02746 1.00050 1.88084 1.19793 1.28624 1.95111 1.23293 0.96057 0.84247 0.98845 1.21081 0.91528 0.96967 0.89275 1.43791 1.75964 1.02161 1.08776 1.18988 1.01425 0.83081 1.30412 0.92954 1.25574 0.94535 0.99569 1.03336 1.70090 1.02720 1.38848 1.45435 0.85661 0.77341 0.82597 0.77554 1.19688 1.22705 1.22470 1.21267 0.95673 0.92668 0.89408 1.22862 0.96731 0.83876 0.92777 0.93418 1.87848 1.32520 1.42086 1.68556 1.22751 0.83683 0.98670 1.00584 1.22035 0.98257 0.95467 0.96267 1.22348 1.00823 0.92920 0.98886 1.22472 0.96806 0.98064 0.98090 1.22357 0.97809 0.93707 1.01687 1.22071 0.97311 0.97185 0.98378 0.89825 0.93110 0.94330 0.92450 0.94544 0.94738 0.91211 0.94857 0.92380 0.94169 0.93331 0.91401 0.94340 0.93299 0.91508 0.91986 0.91325 0.89950 0.90556 0.91382 0.92576 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.71 113.37 1.21 1.93 16 2 O -0.40 -14.83 7.95 -148.98 -1.19 -16.02 16 3 C 0.05 1.84 6.11 71.98 0.44 2.28 16 4 C 0.14 5.59 6.18 86.38 0.53 6.12 16 5 N -0.59 -28.54 2.41 -702.02 -1.69 -30.24 16 6 C -0.21 -11.51 8.10 84.04 0.68 -10.83 16 7 H 0.05 3.03 6.91 -2.91 -0.02 3.01 16 8 C -0.03 -2.01 4.98 84.86 0.42 -1.59 16 9 N -0.92 -56.17 11.48 21.65 0.25 -55.92 16 10 Si 0.94 48.25 29.60 68.60 2.03 50.28 16 11 H -0.27 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.30 -15.70 7.11 99.48 0.71 -15.00 16 13 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 14 C 0.14 6.32 4.98 86.38 0.43 6.75 16 15 C 0.10 3.82 1.79 30.60 0.05 3.87 16 16 H 0.05 1.78 5.86 -2.39 -0.01 1.76 16 17 O -0.39 -17.32 9.03 -148.98 -1.35 -18.66 16 18 C 0.04 1.49 10.43 113.37 1.18 2.68 16 19 C -0.10 -3.35 2.70 -10.07 -0.03 -3.38 16 20 C -0.11 -3.02 5.42 31.67 0.17 -2.85 16 21 C -0.12 -2.44 6.91 31.88 0.22 -2.22 16 22 C -0.12 -2.51 6.83 31.67 0.22 -2.30 16 23 C -0.11 -3.15 6.19 31.32 0.19 -2.95 16 24 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.04 1.22 6.51 -2.39 -0.02 1.20 16 29 H 0.03 1.51 8.09 -2.39 -0.02 1.49 16 30 H 0.07 2.51 7.81 -2.39 -0.02 2.49 16 31 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.06 3.27 5.55 -2.39 -0.01 3.26 16 33 H 0.04 1.73 7.04 -2.39 -0.02 1.71 16 34 H 0.05 1.98 5.93 -2.39 -0.01 1.96 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.04 1.21 7.36 -2.39 -0.02 1.19 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.07 1.76 7.77 -2.38 -0.02 1.74 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.35 8.14 -2.38 -0.02 1.34 16 44 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.05 1.59 6.27 -2.39 -0.01 1.57 16 Total: -1.00 -66.34 344.25 4.72 -61.61 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.93 Total: 11.44 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 5.73 Total: -2.49 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -1.45 Total: -86.16 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -2.53 Total: -34.68 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -66.34 4.72 -61.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595524580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.440 kcal (2) G-P(sol) polarization free energy of solvation -66.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds