Wall clock time and date at job start Mon Mar 30 2020 05:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99625 * 2 1 4 4 C 1.53001 * 109.46546 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.46525 * 185.06811 * 4 3 2 6 6 N 1.46893 * 109.47823 * 65.06648 * 4 3 2 7 7 C 1.46896 * 111.00298 * 84.99545 * 6 4 3 8 8 H 1.09007 * 109.47139 * 325.00453 * 7 6 4 9 9 C 1.52999 * 109.47151 * 85.00275 * 7 6 4 10 10 C 1.52999 * 109.47309 * 205.00663 * 7 6 4 11 11 C 1.50690 * 109.47277 * 65.00077 * 10 7 6 12 12 H 1.08003 * 120.00573 * 359.97438 * 11 10 7 13 13 C 1.37886 * 120.00057 * 180.02562 * 11 10 7 14 14 N 1.31507 * 119.99763 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00015 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47317 * 59.99839 * 15 13 11 17 17 H 1.48496 * 109.46898 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46999 * 299.99988 * 15 13 11 19 19 C 1.53003 * 109.47118 * 305.06033 * 4 3 2 20 20 C 1.53177 * 109.54709 * 304.62489 * 19 4 3 21 21 C 1.53089 * 109.16534 * 183.14941 * 20 19 4 22 22 O 1.42901 * 109.41173 * 57.60942 * 21 20 19 23 23 C 1.42909 * 114.09944 * 298.83690 * 22 21 20 24 24 C 1.53095 * 109.40981 * 61.16397 * 23 22 21 25 25 H 1.08994 * 109.46894 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47026 * 300.00220 * 1 2 3 27 27 H 1.09006 * 109.47022 * 60.00417 * 1 2 3 28 28 H 1.09002 * 109.46930 * 299.99564 * 3 2 1 29 29 H 1.08992 * 109.47547 * 59.99953 * 3 2 1 30 30 H 1.00903 * 111.00653 * 208.95588 * 6 4 3 31 31 H 1.08999 * 109.47369 * 180.02562 * 9 7 6 32 32 H 1.08997 * 109.47023 * 300.00518 * 9 7 6 33 33 H 1.09007 * 109.46954 * 60.00065 * 9 7 6 34 34 H 1.09003 * 109.46750 * 185.00070 * 10 7 6 35 35 H 1.09005 * 109.47019 * 304.99604 * 10 7 6 36 36 H 0.97003 * 120.00522 * 179.97438 * 14 13 11 37 37 H 1.09002 * 109.54045 * 64.89114 * 19 4 3 38 38 H 1.08999 * 109.52098 * 303.05794 * 20 19 4 39 39 H 1.09002 * 109.52437 * 63.23915 * 20 19 4 40 40 H 1.08996 * 109.47886 * 297.62390 * 21 20 19 41 41 H 1.08997 * 109.47691 * 177.58885 * 21 20 19 42 42 H 1.09002 * 109.48058 * 301.18061 * 23 22 21 43 43 H 1.08992 * 109.48232 * 181.14529 * 23 22 21 44 44 H 1.09000 * 109.52178 * 182.49078 * 24 23 22 45 45 H 1.08994 * 109.52447 * 62.29548 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1765 0.0901 6 7 3.9771 0.5642 -1.2567 7 6 4.1192 1.5690 -2.3188 8 1 3.3524 2.3346 -2.1997 9 6 5.5032 2.2150 -2.2278 10 6 3.9595 0.8952 -3.6831 11 6 2.5554 0.3658 -3.8206 12 1 1.8477 0.4964 -3.0153 13 6 2.1744 -0.2864 -4.9742 14 7 3.0362 -0.4459 -5.9546 15 14 0.4340 -0.9433 -5.1443 16 1 -0.5320 0.1788 -5.0308 17 1 0.2794 -1.5982 -6.4681 18 1 0.1712 -1.9332 -4.0691 19 6 3.9789 0.3181 1.1798 20 6 3.4213 0.9015 2.4818 21 6 3.9344 0.0743 3.6634 22 8 5.3634 0.0728 3.6571 23 6 5.9412 -0.5046 2.4845 24 6 5.5087 0.2993 1.2555 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.6886 1.8464 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 4.8371 0.0532 -1.1249 31 1 5.6085 2.9609 -3.0156 32 1 5.6169 2.6950 -1.2559 33 1 6.2700 1.4494 -2.3469 34 1 4.1527 1.6221 -4.4721 35 1 4.6684 0.0713 -3.7666 36 1 2.7684 -0.9050 -6.7660 37 1 3.6080 -0.6981 1.0457 38 1 3.7523 1.9344 2.5892 39 1 2.3321 0.8676 2.4591 40 1 3.5693 -0.9490 3.5765 41 1 3.5754 0.5106 4.5955 42 1 5.6024 -1.5356 2.3822 43 1 7.0278 -0.4855 2.5675 44 1 5.9122 -0.1653 0.3559 45 1 5.8818 1.3201 1.3382 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595614191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:56 Heat of formation + Delta-G solvation = -107.879654 kcal Electronic energy + Delta-G solvation = -22724.209884 eV Core-core repulsion = 19548.205235 eV Total energy + Delta-G solvation = -3176.004650 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.75576 -37.83342 -36.35734 -34.29850 -32.35468 -31.18552 -30.38850 -27.75811 -27.14003 -25.82561 -24.76920 -23.42110 -22.89501 -21.02262 -19.77105 -19.46234 -16.56259 -16.21253 -16.02643 -15.94986 -15.30306 -15.03599 -14.72728 -14.64556 -14.42012 -13.87784 -13.58904 -13.42789 -12.94137 -12.59709 -12.33155 -12.16281 -11.77236 -11.72332 -11.53741 -11.34293 -11.30578 -11.15541 -10.92632 -10.66716 -10.56885 -10.44290 -10.22807 -10.16586 -9.96197 -9.46407 -9.17655 -9.14037 -8.90432 -8.18343 -7.46801 -5.80884 -3.76977 3.43499 3.47586 3.51407 3.82870 4.23273 4.62146 4.64348 4.72380 4.84466 4.95113 5.02054 5.19403 5.36570 5.45938 5.50618 5.55335 5.59014 5.63123 5.68157 5.72755 5.74802 5.77856 5.79206 5.89259 5.92605 5.98595 6.02605 6.03768 6.05949 6.23245 6.26581 6.41863 6.58317 6.64879 7.08265 7.14078 7.57127 7.69446 7.77513 8.09992 8.14507 8.25250 8.68513 9.28232 9.83468 11.31562 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.005630 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.268498 B = 4972.321339 C = 5795.001532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.362 6.362 3 C 0.075 3.925 4 C 0.098 3.902 5 H 0.046 0.954 6 N -0.650 5.650 7 C 0.088 3.912 8 H 0.061 0.939 9 C -0.180 4.180 10 C 0.035 3.965 11 C -0.480 4.480 12 H 0.059 0.941 13 C 0.049 3.951 14 N -0.907 5.907 15 Si 0.887 3.113 16 H -0.282 1.282 17 H -0.292 1.292 18 H -0.278 1.278 19 C -0.085 4.085 20 C -0.147 4.147 21 C 0.062 3.938 22 O -0.388 6.388 23 C 0.063 3.937 24 C -0.155 4.155 25 H 0.079 0.921 26 H 0.028 0.972 27 H 0.039 0.961 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.332 0.668 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.050 0.950 34 H 0.015 0.985 35 H 0.016 0.984 36 H 0.256 0.744 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.089 0.911 42 H 0.051 0.949 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.677 3.049 17.442 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C -0.002 4.002 4 C -0.013 4.013 5 H 0.064 0.936 6 N -0.281 5.281 7 C -0.021 4.021 8 H 0.079 0.921 9 C -0.239 4.239 10 C -0.003 4.003 11 C -0.518 4.518 12 H 0.077 0.923 13 C -0.150 4.150 14 N -0.548 5.548 15 Si 0.716 3.284 16 H -0.208 1.208 17 H -0.218 1.218 18 H -0.203 1.203 19 C -0.104 4.104 20 C -0.185 4.185 21 C -0.014 4.014 22 O -0.307 6.307 23 C -0.014 4.014 24 C -0.193 4.193 25 H 0.098 0.902 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.151 0.849 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.275 2.689 17.215 17.470 hybrid contribution -0.578 0.233 -0.294 0.689 sum 0.696 2.922 16.920 17.185 Atomic orbital electron populations 1.22656 0.82593 1.02136 0.99094 1.87989 1.18005 1.26988 1.95049 1.22558 0.93628 0.85224 0.98834 1.21507 0.93492 0.95936 0.90315 0.93608 1.60535 1.37103 1.26720 1.03754 1.21844 0.92901 0.92642 0.94739 0.92084 1.22576 1.00189 1.01064 1.00099 1.19087 0.97527 0.95229 0.88428 1.21112 0.96706 1.34112 0.99914 0.92267 1.24984 0.96820 0.96883 0.96296 1.69951 1.34396 1.44185 1.06288 0.86738 0.85723 0.79136 0.76812 1.20769 1.21767 1.20326 1.21240 0.94050 1.01576 0.93537 1.22234 1.01369 1.00036 0.94903 1.22558 0.80999 0.99361 0.98520 1.87890 1.19889 1.82421 1.40481 1.22549 0.98172 0.95883 0.84748 1.22308 0.96693 1.01414 0.98849 0.90245 0.95332 0.94188 0.93023 0.94523 0.84862 0.92569 0.94510 0.93056 0.96689 0.96592 0.93436 0.89153 0.91571 0.90554 0.93154 0.89318 0.93065 0.89170 0.90534 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -6.33 9.87 -35.23 -0.35 -6.68 16 3 C 0.08 1.19 5.03 37.16 0.19 1.37 16 4 C 0.10 1.49 1.84 -67.71 -0.12 1.36 16 5 H 0.05 0.67 7.11 -51.92 -0.37 0.30 16 6 N -0.65 -11.97 5.72 -99.74 -0.57 -12.54 16 7 C 0.09 1.76 2.33 -67.72 -0.16 1.60 16 8 H 0.06 1.25 7.10 -51.93 -0.37 0.88 16 9 C -0.18 -2.99 9.15 37.16 0.34 -2.65 16 10 C 0.03 0.89 4.65 -27.89 -0.13 0.76 16 11 C -0.48 -13.59 8.84 -34.44 -0.30 -13.89 16 12 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 13 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 14 N -0.91 -27.82 13.29 55.43 0.74 -27.08 16 15 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 C -0.09 -1.11 1.70 -90.43 -0.15 -1.27 16 20 C -0.15 -1.66 4.84 -26.59 -0.13 -1.79 16 21 C 0.06 0.66 6.84 37.20 0.25 0.92 16 22 O -0.39 -4.77 10.77 -35.23 -0.38 -5.15 16 23 C 0.06 0.69 6.84 37.21 0.25 0.95 16 24 C -0.15 -1.82 5.19 -26.59 -0.14 -1.96 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.92 7.37 -51.93 -0.38 0.54 16 29 H 0.04 0.48 6.74 -51.93 -0.35 0.13 16 30 H 0.33 5.77 6.27 -39.29 -0.25 5.53 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.53 7.43 -51.93 -0.39 0.15 16 33 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 34 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.09 1.36 7.73 -51.93 -0.40 0.96 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.85 6.68 -51.93 -0.35 0.50 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.91 6.55 -51.93 -0.34 0.57 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 349.07 15.07 5.26 5.26 Total: -1.00 -31.48 349.07 -7.63 -39.11 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -8.23 Total: 1.30 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 0.91 Total: -11.69 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.17 Total: -39.62 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.73 Total: -11.82 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.48 -7.63 -39.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.765 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds