Wall clock time and date at job start Mon Mar 30 2020 05:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99625 * 2 1 4 4 C 1.53001 * 109.46546 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.46525 * 185.06811 * 4 3 2 6 6 N 1.46893 * 109.47823 * 65.06648 * 4 3 2 7 7 C 1.46896 * 111.00298 * 84.99545 * 6 4 3 8 8 H 1.09007 * 109.47139 * 325.00453 * 7 6 4 9 9 C 1.52999 * 109.47151 * 85.00275 * 7 6 4 10 10 C 1.52999 * 109.47309 * 205.00663 * 7 6 4 11 11 C 1.50690 * 109.47277 * 65.00077 * 10 7 6 12 12 H 1.08003 * 120.00573 * 359.97438 * 11 10 7 13 13 C 1.37886 * 120.00057 * 180.02562 * 11 10 7 14 14 N 1.31507 * 119.99763 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00015 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47317 * 59.99839 * 15 13 11 17 17 H 1.48496 * 109.46898 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46999 * 299.99988 * 15 13 11 19 19 C 1.53003 * 109.47118 * 305.06033 * 4 3 2 20 20 C 1.53177 * 109.54709 * 304.62489 * 19 4 3 21 21 C 1.53089 * 109.16534 * 183.14941 * 20 19 4 22 22 O 1.42901 * 109.41173 * 57.60942 * 21 20 19 23 23 C 1.42909 * 114.09944 * 298.83690 * 22 21 20 24 24 C 1.53095 * 109.40981 * 61.16397 * 23 22 21 25 25 H 1.08994 * 109.46894 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47026 * 300.00220 * 1 2 3 27 27 H 1.09006 * 109.47022 * 60.00417 * 1 2 3 28 28 H 1.09002 * 109.46930 * 299.99564 * 3 2 1 29 29 H 1.08992 * 109.47547 * 59.99953 * 3 2 1 30 30 H 1.00903 * 111.00653 * 208.95588 * 6 4 3 31 31 H 1.08999 * 109.47369 * 180.02562 * 9 7 6 32 32 H 1.08997 * 109.47023 * 300.00518 * 9 7 6 33 33 H 1.09007 * 109.46954 * 60.00065 * 9 7 6 34 34 H 1.09003 * 109.46750 * 185.00070 * 10 7 6 35 35 H 1.09005 * 109.47019 * 304.99604 * 10 7 6 36 36 H 0.97003 * 120.00522 * 179.97438 * 14 13 11 37 37 H 1.09002 * 109.54045 * 64.89114 * 19 4 3 38 38 H 1.08999 * 109.52098 * 303.05794 * 20 19 4 39 39 H 1.09002 * 109.52437 * 63.23915 * 20 19 4 40 40 H 1.08996 * 109.47886 * 297.62390 * 21 20 19 41 41 H 1.08997 * 109.47691 * 177.58885 * 21 20 19 42 42 H 1.09002 * 109.48058 * 301.18061 * 23 22 21 43 43 H 1.08992 * 109.48232 * 181.14529 * 23 22 21 44 44 H 1.09000 * 109.52178 * 182.49078 * 24 23 22 45 45 H 1.08994 * 109.52447 * 62.29548 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1765 0.0901 6 7 3.9771 0.5642 -1.2567 7 6 4.1192 1.5690 -2.3188 8 1 3.3524 2.3346 -2.1997 9 6 5.5032 2.2150 -2.2278 10 6 3.9595 0.8952 -3.6831 11 6 2.5554 0.3658 -3.8206 12 1 1.8477 0.4964 -3.0153 13 6 2.1744 -0.2864 -4.9742 14 7 3.0362 -0.4459 -5.9546 15 14 0.4340 -0.9433 -5.1443 16 1 -0.5320 0.1788 -5.0308 17 1 0.2794 -1.5982 -6.4681 18 1 0.1712 -1.9332 -4.0691 19 6 3.9789 0.3181 1.1798 20 6 3.4213 0.9015 2.4818 21 6 3.9344 0.0743 3.6634 22 8 5.3634 0.0728 3.6571 23 6 5.9412 -0.5046 2.4845 24 6 5.5087 0.2993 1.2555 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.6886 1.8464 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 4.8371 0.0532 -1.1249 31 1 5.6085 2.9609 -3.0156 32 1 5.6169 2.6950 -1.2559 33 1 6.2700 1.4494 -2.3469 34 1 4.1527 1.6221 -4.4721 35 1 4.6684 0.0713 -3.7666 36 1 2.7684 -0.9050 -6.7660 37 1 3.6080 -0.6981 1.0457 38 1 3.7523 1.9344 2.5892 39 1 2.3321 0.8676 2.4591 40 1 3.5693 -0.9490 3.5765 41 1 3.5754 0.5106 4.5955 42 1 5.6024 -1.5356 2.3822 43 1 7.0278 -0.4855 2.5675 44 1 5.9122 -0.1653 0.3559 45 1 5.8818 1.3201 1.3382 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595614191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:56 Heat of formation + Delta-G solvation = -129.368738 kcal Electronic energy + Delta-G solvation = -22725.141721 eV Core-core repulsion = 19548.205235 eV Total energy + Delta-G solvation = -3176.936486 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.78188 -39.00414 -37.76858 -35.67767 -34.33600 -32.06384 -31.73808 -29.41029 -28.72091 -26.98739 -25.84384 -25.01119 -24.21411 -22.17015 -21.23802 -20.68991 -18.39126 -17.44679 -17.38776 -16.89038 -16.52027 -16.48562 -16.18757 -15.93505 -15.59928 -15.35210 -14.66860 -14.54142 -14.42218 -14.12568 -13.57756 -13.50461 -13.31865 -13.18107 -12.88301 -12.85912 -12.58078 -12.43937 -12.28030 -12.25266 -12.18202 -11.89033 -11.59003 -11.41463 -11.10137 -11.08351 -10.98029 -10.46489 -10.39597 -10.35696 -8.90850 -8.06549 -6.09349 1.38819 1.42740 1.49666 2.48568 2.98706 3.05538 3.25398 3.41282 3.72544 3.81673 3.99155 4.12459 4.24297 4.32854 4.38854 4.41024 4.44688 4.49672 4.55935 4.56934 4.61582 4.66550 4.71571 4.74774 4.83473 4.88074 4.95387 4.97375 5.01278 5.02068 5.18632 5.23601 5.24891 5.31363 5.51022 5.56064 5.73012 5.93578 6.29922 6.34966 6.44370 6.62145 6.79898 7.04261 7.55199 9.05655 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.005630 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.268498 B = 4972.321339 C = 5795.001532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.388 6.388 3 C 0.074 3.926 4 C 0.100 3.900 5 H 0.058 0.942 6 N -0.669 5.669 7 C 0.100 3.900 8 H 0.055 0.945 9 C -0.169 4.169 10 C 0.039 3.961 11 C -0.486 4.486 12 H 0.056 0.944 13 C -0.008 4.008 14 N -0.943 5.943 15 Si 0.951 3.049 16 H -0.270 1.270 17 H -0.288 1.288 18 H -0.274 1.274 19 C -0.077 4.077 20 C -0.141 4.141 21 C 0.061 3.939 22 O -0.401 6.401 23 C 0.063 3.937 24 C -0.150 4.150 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.336 0.664 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.052 0.948 34 H -0.011 1.011 35 H -0.012 1.012 36 H 0.257 0.743 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.108 0.892 42 H 0.051 0.949 43 H 0.106 0.894 44 H 0.072 0.928 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.197 3.512 19.622 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.307 6.307 3 C -0.003 4.003 4 C -0.009 4.009 5 H 0.076 0.924 6 N -0.301 5.301 7 C -0.010 4.010 8 H 0.073 0.927 9 C -0.228 4.228 10 C 0.002 3.998 11 C -0.524 4.524 12 H 0.074 0.926 13 C -0.203 4.203 14 N -0.585 5.585 15 Si 0.777 3.223 16 H -0.195 1.195 17 H -0.214 1.214 18 H -0.199 1.199 19 C -0.096 4.096 20 C -0.179 4.179 21 C -0.016 4.016 22 O -0.320 6.320 23 C -0.013 4.013 24 C -0.188 4.188 25 H 0.104 0.896 26 H 0.078 0.922 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.156 0.844 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.008 0.992 35 H 0.007 0.993 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.126 0.874 42 H 0.069 0.931 43 H 0.124 0.876 44 H 0.090 0.910 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.789 3.160 19.414 19.685 hybrid contribution -0.441 0.083 -0.961 1.060 sum 0.348 3.243 18.453 18.739 Atomic orbital electron populations 1.22793 0.81369 1.02892 0.99846 1.87950 1.19544 1.27964 1.95202 1.22627 0.93950 0.84749 0.98965 1.21574 0.93213 0.96688 0.89468 0.92409 1.60355 1.37638 1.27032 1.05073 1.21467 0.94873 0.92296 0.92319 0.92695 1.22422 0.97773 1.00928 1.01691 1.18974 0.95564 0.93910 0.91371 1.21419 0.97823 1.33598 0.99601 0.92624 1.25815 1.00903 0.97419 0.96145 1.70084 1.36409 1.45230 1.06825 0.85715 0.81054 0.78734 0.76784 1.19543 1.21381 1.19938 1.21124 0.94993 0.99945 0.93565 1.22185 1.01464 1.00300 0.93955 1.22670 0.80327 0.99471 0.99100 1.87879 1.20719 1.82527 1.40876 1.22612 0.99094 0.95610 0.84024 1.22262 0.95639 1.01765 0.99162 0.89589 0.92219 0.95720 0.95729 0.91409 0.84408 0.92707 0.91624 0.92881 0.99249 0.99347 0.93474 0.91305 0.90943 0.90242 0.93157 0.87354 0.93051 0.87634 0.90985 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.39 -13.19 9.87 -148.98 -1.47 -14.66 16 3 C 0.07 2.26 5.03 71.98 0.36 2.62 16 4 C 0.10 2.91 1.84 44.92 0.08 2.99 16 5 H 0.06 1.56 7.11 -2.38 -0.02 1.54 16 6 N -0.67 -24.46 5.72 -469.47 -2.69 -27.14 16 7 C 0.10 4.01 2.33 44.92 0.10 4.12 16 8 H 0.05 2.26 7.10 -2.38 -0.02 2.24 16 9 C -0.17 -5.43 9.15 71.98 0.66 -4.77 16 10 C 0.04 2.08 4.65 29.84 0.14 2.21 16 11 C -0.49 -28.10 8.84 25.60 0.23 -27.87 16 12 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 13 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 14 N -0.94 -59.14 13.29 21.45 0.28 -58.86 16 15 Si 0.95 46.61 29.54 68.60 2.03 48.64 16 16 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 17 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 18 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 19 C -0.08 -1.89 1.70 -10.67 -0.02 -1.91 16 20 C -0.14 -2.80 4.84 30.68 0.15 -2.65 16 21 C 0.06 1.13 6.84 72.01 0.49 1.62 16 22 O -0.40 -8.85 10.77 -148.98 -1.60 -10.46 16 23 C 0.06 1.25 6.84 72.01 0.49 1.75 16 24 C -0.15 -3.26 5.19 30.69 0.16 -3.10 16 25 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.02 0.87 7.37 -2.39 -0.02 0.85 16 29 H 0.07 1.62 6.74 -2.39 -0.02 1.60 16 30 H 0.34 11.60 6.27 -89.69 -0.56 11.03 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.73 7.43 -2.39 -0.02 1.72 16 33 H 0.05 1.68 8.13 -2.38 -0.02 1.66 16 34 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 35 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 36 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.07 2.01 7.73 -2.39 -0.02 1.99 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.54 6.68 -2.39 -0.02 1.52 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.07 1.62 6.55 -2.39 -0.02 1.61 16 45 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -68.38 349.07 1.49 -66.89 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.38 Total: 18.55 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 4.56 Total: -22.95 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -2.40 Total: -86.00 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -3.07 Total: -25.12 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -68.38 1.49 -66.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.480 kcal (2) G-P(sol) polarization free energy of solvation -68.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds