Wall clock time and date at job start Mon Mar 30 2020 06:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00482 * 2 1 4 4 H 1.09000 * 109.47075 * 29.99805 * 3 2 1 5 5 C 1.52996 * 109.46885 * 270.00062 * 3 2 1 6 6 C 1.53002 * 109.46972 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47415 * 59.99860 * 6 5 3 8 8 C 1.53006 * 109.47164 * 300.00027 * 7 6 5 9 9 H 1.09000 * 109.47050 * 300.00004 * 8 7 6 10 10 C 1.52997 * 109.47164 * 179.97438 * 8 7 6 11 11 H 1.09000 * 109.47140 * 299.99948 * 10 8 7 12 12 C 1.52996 * 109.46975 * 180.02562 * 10 8 7 13 13 O 1.42902 * 109.47084 * 304.99855 * 12 10 8 14 14 N 1.46896 * 109.47234 * 59.99900 * 10 8 7 15 15 C 1.46900 * 111.00034 * 204.99773 * 14 10 8 16 16 C 1.53006 * 109.47021 * 180.02562 * 15 14 10 17 17 C 1.50696 * 109.46741 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00602 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99498 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00212 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99758 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47139 * 89.99865 * 21 19 17 23 23 H 1.48496 * 109.46814 * 209.99897 * 21 19 17 24 24 H 1.48505 * 109.47184 * 329.99803 * 21 19 17 25 25 C 1.52997 * 109.47412 * 149.99976 * 3 2 1 26 26 H 1.09003 * 109.47307 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46956 * 300.00370 * 1 2 3 28 28 H 1.08999 * 109.46675 * 59.99944 * 1 2 3 29 29 H 1.08992 * 109.47534 * 60.00076 * 5 3 2 30 30 H 1.08996 * 109.47134 * 299.99271 * 5 3 2 31 31 H 1.09000 * 109.46986 * 299.99742 * 6 5 3 32 32 H 1.09001 * 109.47601 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.46922 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47140 * 59.99976 * 7 6 5 35 35 H 1.09000 * 109.47805 * 64.99517 * 12 10 8 36 36 H 1.09000 * 109.47097 * 184.99729 * 12 10 8 37 37 H 0.96703 * 114.00106 * 180.02562 * 13 12 10 38 38 H 1.00902 * 111.00497 * 328.95621 * 14 10 8 39 39 H 1.08995 * 109.47142 * 300.00019 * 15 14 10 40 40 H 1.08996 * 109.46700 * 60.00472 * 15 14 10 41 41 H 1.08999 * 109.47038 * 300.00453 * 16 15 14 42 42 H 1.09001 * 109.46997 * 60.00150 * 16 15 14 43 43 H 0.96997 * 120.00283 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.47140 * 59.99868 * 25 3 2 45 45 H 1.09002 * 109.47045 * 299.99961 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7712 -1.4425 6 6 2.8408 3.1686 -1.4425 7 6 4.1895 3.1258 -0.7215 8 6 3.9820 2.6599 0.7211 9 1 3.3172 3.3541 1.2350 10 6 5.3308 2.6165 1.4420 11 1 5.9953 1.9220 0.9279 12 6 5.1234 2.1500 2.8843 13 8 4.1625 2.9924 3.5238 14 7 5.9295 3.9579 1.4419 15 6 7.3917 3.8818 1.5611 16 6 7.9779 5.2952 1.5581 17 6 9.4779 5.2170 1.6797 18 1 9.9646 4.2556 1.7515 19 6 10.2290 6.3731 1.6994 20 7 9.6364 7.5439 1.6125 21 14 12.0885 6.2763 1.8494 22 1 12.6913 6.2028 0.4943 23 1 12.5920 7.4847 2.5503 24 1 12.4603 5.0644 2.6230 25 6 3.3589 1.2631 0.7212 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.2570 1.8014 -1.9563 30 1 2.8830 1.0773 -1.9563 31 1 2.1759 3.8628 -0.9286 32 1 2.9882 3.5008 -2.4702 33 1 4.6330 4.1215 -0.7211 34 1 4.8543 2.4316 -1.2354 35 1 4.7626 1.1215 2.8853 36 1 6.0694 2.2037 3.4231 37 1 3.9812 2.7547 4.4435 38 1 5.6603 4.4741 0.6178 39 1 7.6547 3.3818 2.4932 40 1 7.7959 3.3187 0.7199 41 1 7.7148 5.7956 0.6263 42 1 7.5736 5.8579 2.3995 43 1 10.1648 8.3572 1.6259 44 1 4.0242 0.5692 0.2074 45 1 3.2111 0.9312 1.7489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595631764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:28 Heat of formation + Delta-G solvation = -123.274698 kcal Electronic energy + Delta-G solvation = -21749.562853 eV Core-core repulsion = 18572.890624 eV Total energy + Delta-G solvation = -3176.672229 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.77344 -37.85663 -36.06569 -35.09717 -33.05496 -31.55044 -30.24662 -28.77694 -27.24634 -26.50266 -24.34006 -22.84567 -22.24395 -20.55397 -20.22710 -19.64212 -17.14301 -16.75177 -16.26361 -16.06657 -15.36840 -15.05316 -14.78695 -14.49508 -14.41801 -13.89544 -13.59073 -13.49825 -13.28625 -12.86235 -12.45068 -12.31582 -12.13237 -11.94575 -11.64943 -11.52625 -11.14157 -10.99352 -10.97819 -10.86503 -10.61287 -10.47580 -10.39332 -10.19361 -9.98483 -9.63134 -9.53885 -9.29568 -9.09856 -8.32853 -7.69640 -5.97243 -3.99762 3.33114 3.39242 3.42574 3.52873 4.43395 4.51131 4.55809 4.65708 4.75425 4.87904 4.95228 5.03519 5.13743 5.16597 5.24594 5.33748 5.36714 5.38530 5.42533 5.46033 5.57845 5.64003 5.75157 5.82378 5.87570 5.89989 5.97684 6.08493 6.14085 6.19478 6.32477 6.37569 6.42849 6.56439 7.02910 7.04181 7.55883 7.77353 7.86689 7.93697 8.03842 8.14133 8.46935 9.07736 9.63744 11.14188 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.033140 B = 0.003404 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.692981 B = 8223.716099 C = 8629.246976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.091 3.909 4 H 0.061 0.939 5 C -0.139 4.139 6 C -0.114 4.114 7 C -0.124 4.124 8 C -0.079 4.079 9 H 0.089 0.911 10 C 0.093 3.907 11 H 0.049 0.951 12 C 0.088 3.912 13 O -0.554 6.554 14 N -0.678 5.678 15 C 0.065 3.935 16 C 0.027 3.973 17 C -0.521 4.521 18 H 0.053 0.947 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.107 4.107 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.045 0.955 37 H 0.367 0.633 38 H 0.337 0.663 39 H 0.055 0.945 40 H 0.013 0.987 41 H 0.012 0.988 42 H 0.025 0.975 43 H 0.260 0.740 44 H 0.066 0.934 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.912 -13.746 -3.110 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.034 3.966 4 H 0.079 0.921 5 C -0.177 4.177 6 C -0.151 4.151 7 C -0.162 4.162 8 C -0.097 4.097 9 H 0.107 0.893 10 C -0.017 4.017 11 H 0.067 0.933 12 C 0.009 3.991 13 O -0.357 6.357 14 N -0.312 5.312 15 C -0.063 4.063 16 C -0.011 4.011 17 C -0.560 4.560 18 H 0.072 0.928 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.145 4.145 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.212 0.788 38 H 0.158 0.842 39 H 0.074 0.926 40 H 0.031 0.969 41 H 0.031 0.969 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.846 -13.326 -3.038 22.479 hybrid contribution 1.169 -0.377 -0.298 1.263 sum -16.678 -13.703 -3.335 21.841 Atomic orbital electron populations 1.22754 0.81494 1.02421 0.99856 1.87898 1.19313 1.28387 1.95089 1.22160 0.95096 0.83940 0.95449 0.92134 1.22029 1.01035 0.97561 0.97074 1.21451 0.96874 0.96119 1.00704 1.21720 0.97160 1.01970 0.95358 1.21126 0.97002 0.96436 0.95182 0.89255 1.21537 0.94449 0.92173 0.93558 0.93302 1.22212 0.91585 0.91472 0.93806 1.86583 1.62303 1.57996 1.28863 1.60583 1.10818 1.13676 1.46074 1.22211 0.84376 1.01163 0.98529 1.19046 0.94623 0.89803 0.97616 1.21185 0.92014 0.92420 1.50381 0.92832 1.25004 0.98525 0.95474 0.95371 1.69973 1.35394 0.97302 1.50553 0.86599 0.85793 0.77518 0.78101 1.20724 1.21197 1.19913 1.21618 0.94795 0.97430 1.00671 0.89906 0.94111 0.94250 0.92238 0.91233 0.91785 0.91635 0.91040 0.91971 0.94298 0.93716 0.78813 0.84237 0.92611 0.96860 0.96916 0.95616 0.93011 0.91490 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.39 -4.34 10.35 -35.23 -0.36 -4.71 16 3 C 0.09 0.97 2.61 -26.73 -0.07 0.90 16 4 H 0.06 0.63 7.79 -51.93 -0.40 0.22 16 5 C -0.14 -1.37 5.54 -26.73 -0.15 -1.52 16 6 C -0.11 -1.15 5.92 -26.73 -0.16 -1.31 16 7 C -0.12 -1.48 4.97 -26.73 -0.13 -1.61 16 8 C -0.08 -0.99 1.71 -90.65 -0.16 -1.15 16 9 H 0.09 1.26 7.56 -51.93 -0.39 0.87 16 10 C 0.09 1.38 2.02 -67.72 -0.14 1.25 16 11 H 0.05 0.73 7.80 -51.93 -0.40 0.32 16 12 C 0.09 1.21 6.30 37.16 0.23 1.45 16 13 O -0.55 -7.79 12.73 -35.23 -0.45 -8.24 16 14 N -0.68 -12.47 6.26 -106.73 -0.67 -13.14 16 15 C 0.07 1.41 5.42 -3.82 -0.02 1.38 16 16 C 0.03 0.71 5.23 -27.88 -0.15 0.56 16 17 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 21 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 C -0.11 -1.22 4.50 -26.76 -0.12 -1.34 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 28 H 0.04 0.28 7.87 -51.93 -0.41 -0.13 16 29 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.92 6.21 -51.93 -0.32 0.60 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.45 6.71 -51.93 -0.35 0.10 16 36 H 0.04 0.67 7.35 -51.93 -0.38 0.29 16 37 H 0.37 3.52 9.12 45.56 0.42 3.93 16 38 H 0.34 6.04 6.17 -39.29 -0.24 5.80 16 39 H 0.06 1.21 7.36 -51.93 -0.38 0.82 16 40 H 0.01 0.28 8.05 -51.93 -0.42 -0.14 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.82 6.54 -51.93 -0.34 0.48 16 LS Contribution 348.77 15.07 5.26 5.26 Total: -1.00 -32.20 348.77 -8.06 -40.27 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.38 Total: 4.02 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -0.17 Total: -13.80 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.07 Total: -39.68 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.81 Total: -12.95 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.20 -8.06 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595631764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.006 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds