Wall clock time and date at job start Mon Mar 30 2020 06:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00482 * 2 1 4 4 H 1.09000 * 109.47075 * 29.99805 * 3 2 1 5 5 C 1.52996 * 109.46885 * 270.00062 * 3 2 1 6 6 C 1.53002 * 109.46972 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47415 * 59.99860 * 6 5 3 8 8 C 1.53006 * 109.47164 * 300.00027 * 7 6 5 9 9 H 1.09000 * 109.47050 * 300.00004 * 8 7 6 10 10 C 1.52997 * 109.47164 * 179.97438 * 8 7 6 11 11 H 1.09000 * 109.47140 * 299.99948 * 10 8 7 12 12 C 1.52996 * 109.46975 * 180.02562 * 10 8 7 13 13 O 1.42902 * 109.47084 * 304.99855 * 12 10 8 14 14 N 1.46896 * 109.47234 * 59.99900 * 10 8 7 15 15 C 1.46900 * 111.00034 * 204.99773 * 14 10 8 16 16 C 1.53006 * 109.47021 * 180.02562 * 15 14 10 17 17 C 1.50696 * 109.46741 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00602 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99498 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00212 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99758 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47139 * 89.99865 * 21 19 17 23 23 H 1.48496 * 109.46814 * 209.99897 * 21 19 17 24 24 H 1.48505 * 109.47184 * 329.99803 * 21 19 17 25 25 C 1.52997 * 109.47412 * 149.99976 * 3 2 1 26 26 H 1.09003 * 109.47307 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46956 * 300.00370 * 1 2 3 28 28 H 1.08999 * 109.46675 * 59.99944 * 1 2 3 29 29 H 1.08992 * 109.47534 * 60.00076 * 5 3 2 30 30 H 1.08996 * 109.47134 * 299.99271 * 5 3 2 31 31 H 1.09000 * 109.46986 * 299.99742 * 6 5 3 32 32 H 1.09001 * 109.47601 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.46922 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47140 * 59.99976 * 7 6 5 35 35 H 1.09000 * 109.47805 * 64.99517 * 12 10 8 36 36 H 1.09000 * 109.47097 * 184.99729 * 12 10 8 37 37 H 0.96703 * 114.00106 * 180.02562 * 13 12 10 38 38 H 1.00902 * 111.00497 * 328.95621 * 14 10 8 39 39 H 1.08995 * 109.47142 * 300.00019 * 15 14 10 40 40 H 1.08996 * 109.46700 * 60.00472 * 15 14 10 41 41 H 1.08999 * 109.47038 * 300.00453 * 16 15 14 42 42 H 1.09001 * 109.46997 * 60.00150 * 16 15 14 43 43 H 0.96997 * 120.00283 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.47140 * 59.99868 * 25 3 2 45 45 H 1.09002 * 109.47045 * 299.99961 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7712 -1.4425 6 6 2.8408 3.1686 -1.4425 7 6 4.1895 3.1258 -0.7215 8 6 3.9820 2.6599 0.7211 9 1 3.3172 3.3541 1.2350 10 6 5.3308 2.6165 1.4420 11 1 5.9953 1.9220 0.9279 12 6 5.1234 2.1500 2.8843 13 8 4.1625 2.9924 3.5238 14 7 5.9295 3.9579 1.4419 15 6 7.3917 3.8818 1.5611 16 6 7.9779 5.2952 1.5581 17 6 9.4779 5.2170 1.6797 18 1 9.9646 4.2556 1.7515 19 6 10.2290 6.3731 1.6994 20 7 9.6364 7.5439 1.6125 21 14 12.0885 6.2763 1.8494 22 1 12.6913 6.2028 0.4943 23 1 12.5920 7.4847 2.5503 24 1 12.4603 5.0644 2.6230 25 6 3.3589 1.2631 0.7212 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.2570 1.8014 -1.9563 30 1 2.8830 1.0773 -1.9563 31 1 2.1759 3.8628 -0.9286 32 1 2.9882 3.5008 -2.4702 33 1 4.6330 4.1215 -0.7211 34 1 4.8543 2.4316 -1.2354 35 1 4.7626 1.1215 2.8853 36 1 6.0694 2.2037 3.4231 37 1 3.9812 2.7547 4.4435 38 1 5.6603 4.4741 0.6178 39 1 7.6547 3.3818 2.4932 40 1 7.7959 3.3187 0.7199 41 1 7.7148 5.7956 0.6263 42 1 7.5736 5.8579 2.3995 43 1 10.1648 8.3572 1.6259 44 1 4.0242 0.5692 0.2074 45 1 3.2111 0.9312 1.7489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595631764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:27 Heat of formation + Delta-G solvation = -147.049585 kcal Electronic energy + Delta-G solvation = -21750.593810 eV Core-core repulsion = 18572.890624 eV Total energy + Delta-G solvation = -3177.703185 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.73376 -38.86939 -37.02440 -36.60105 -34.96248 -32.94759 -31.30879 -30.23249 -28.50015 -27.24341 -26.13738 -24.09948 -23.13278 -22.33913 -21.25475 -20.73197 -18.53046 -18.17234 -17.71019 -17.01201 -16.50604 -16.25737 -16.06318 -15.82749 -15.57702 -14.97200 -14.92567 -14.67756 -14.45505 -14.22061 -13.85896 -13.61067 -13.20421 -13.14270 -12.96758 -12.80829 -12.67244 -12.41027 -12.30649 -12.04809 -11.96107 -11.75575 -11.55305 -11.41292 -11.33875 -11.15340 -11.12594 -10.68419 -10.56586 -10.34295 -9.19986 -8.20445 -6.32320 1.39668 1.41582 1.52712 2.40057 2.75628 3.12700 3.33420 3.53955 3.65022 3.75804 4.00077 4.05737 4.18237 4.26814 4.40774 4.44980 4.47988 4.50235 4.53510 4.56218 4.58383 4.63174 4.71232 4.73170 4.76282 4.85994 4.90351 5.01223 5.08300 5.08927 5.18320 5.25079 5.28563 5.36934 5.44697 5.53092 5.67974 5.79918 6.16490 6.30514 6.33046 6.57640 6.85190 7.05871 7.36964 8.91840 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.033140 B = 0.003404 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.692981 B = 8223.716099 C = 8629.246976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.092 3.908 4 H 0.063 0.937 5 C -0.134 4.134 6 C -0.109 4.109 7 C -0.125 4.125 8 C -0.066 4.066 9 H 0.075 0.925 10 C 0.088 3.912 11 H 0.052 0.948 12 C 0.090 3.910 13 O -0.572 6.572 14 N -0.686 5.686 15 C 0.085 3.915 16 C 0.035 3.965 17 C -0.545 4.545 18 H 0.060 0.940 19 C 0.000 4.000 20 N -0.932 5.932 21 Si 0.968 3.032 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.263 1.263 25 C -0.101 4.101 26 H 0.096 0.904 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.030 0.970 37 H 0.386 0.614 38 H 0.338 0.662 39 H 0.054 0.946 40 H 0.018 0.982 41 H -0.011 1.011 42 H -0.009 1.009 43 H 0.264 0.736 44 H 0.065 0.935 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.152 -15.244 -3.379 23.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.035 3.965 4 H 0.081 0.919 5 C -0.172 4.172 6 C -0.147 4.147 7 C -0.162 4.162 8 C -0.084 4.084 9 H 0.094 0.906 10 C -0.022 4.022 11 H 0.070 0.930 12 C 0.011 3.989 13 O -0.379 6.379 14 N -0.319 5.319 15 C -0.044 4.044 16 C -0.003 4.003 17 C -0.583 4.583 18 H 0.079 0.921 19 C -0.198 4.198 20 N -0.572 5.572 21 Si 0.792 3.208 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.187 1.187 25 C -0.139 4.139 26 H 0.115 0.885 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.234 0.766 38 H 0.158 0.842 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.008 0.992 42 H 0.009 0.991 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.110 -14.847 -3.295 23.649 hybrid contribution 1.156 0.091 -0.192 1.175 sum -16.955 -14.756 -3.487 22.745 Atomic orbital electron populations 1.22948 0.79911 1.03652 1.00623 1.87863 1.21102 1.28465 1.95221 1.22109 0.94580 0.84079 0.95734 0.91863 1.21981 1.01548 0.96940 0.96724 1.21415 0.95709 0.96581 1.00970 1.21709 0.98302 1.01012 0.95221 1.20960 0.95355 0.97102 0.95030 0.90628 1.21700 0.95393 0.90068 0.95014 0.92981 1.22187 0.91166 0.92789 0.92745 1.86531 1.62159 1.58604 1.30582 1.60518 1.08829 1.16185 1.46417 1.21813 0.86307 0.97626 0.98626 1.18884 0.94323 0.92269 0.94818 1.21613 0.93211 0.92952 1.50549 0.92143 1.25998 1.04208 0.94943 0.94654 1.70112 1.37641 0.98171 1.51268 0.85409 0.78882 0.77935 0.78574 1.19642 1.20689 1.18696 1.21533 0.95346 0.96157 1.00899 0.88543 0.93509 0.93310 0.90918 0.91671 0.91576 0.90702 0.92510 0.91993 0.91478 0.95174 0.76600 0.84176 0.92709 0.96400 0.99216 0.99058 0.92723 0.91602 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.82 113.37 1.23 1.57 16 2 O -0.41 -8.32 10.35 -148.98 -1.54 -9.86 16 3 C 0.09 1.80 2.61 30.59 0.08 1.88 16 4 H 0.06 1.19 7.79 -2.39 -0.02 1.17 16 5 C -0.13 -2.39 5.54 30.59 0.17 -2.22 16 6 C -0.11 -2.06 5.92 30.59 0.18 -1.88 16 7 C -0.12 -2.90 4.97 30.60 0.15 -2.74 16 8 C -0.07 -1.60 1.71 -10.81 -0.02 -1.62 16 9 H 0.08 2.09 7.56 -2.39 -0.02 2.08 16 10 C 0.09 2.56 2.02 44.91 0.09 2.66 16 11 H 0.05 1.50 7.80 -2.39 -0.02 1.48 16 12 C 0.09 2.38 6.30 71.98 0.45 2.84 16 13 O -0.57 -15.57 12.73 -148.98 -1.90 -17.47 16 14 N -0.69 -25.59 6.26 -491.59 -3.08 -28.67 16 15 C 0.09 3.72 5.42 86.31 0.47 4.18 16 16 C 0.03 1.90 5.23 29.85 0.16 2.06 16 17 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 18 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 19 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 20 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 21 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 25 C -0.10 -2.16 4.50 30.58 0.14 -2.02 16 26 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 0.58 8.08 -2.39 -0.02 0.56 16 28 H 0.05 0.57 7.87 -2.39 -0.02 0.56 16 29 H 0.07 1.12 7.87 -2.39 -0.02 1.10 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.48 6.21 -2.39 -0.01 1.47 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.41 6.71 -2.39 -0.02 1.40 16 36 H 0.03 0.88 7.35 -2.39 -0.02 0.86 16 37 H 0.39 6.92 9.12 -74.05 -0.68 6.25 16 38 H 0.34 12.43 6.17 -89.69 -0.55 11.88 16 39 H 0.05 2.39 7.36 -2.39 -0.02 2.37 16 40 H 0.02 0.76 8.05 -2.39 -0.02 0.74 16 41 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 42 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 43 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.07 1.51 6.54 -2.39 -0.02 1.50 16 Total: -1.00 -69.17 348.77 -0.68 -69.85 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -0.27 Total: 23.37 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: 3.79 Total: -26.41 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -2.79 Total: -86.34 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -3.44 Total: -27.33 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -69.17 -0.68 -69.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595631764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.201 kcal (2) G-P(sol) polarization free energy of solvation -69.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds