Wall clock time and date at job start Mon Mar 30 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99736 * 2 1 4 4 C 1.53004 * 109.47292 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.46864 * 54.26959 * 4 3 2 6 6 C 1.46894 * 111.00068 * 63.35730 * 5 4 3 7 7 C 1.52994 * 109.47292 * 185.25838 * 6 5 4 8 8 O 1.42901 * 109.47202 * 64.99715 * 7 6 5 9 9 C 1.42897 * 114.00017 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47013 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00317 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99817 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99688 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99825 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47361 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47195 * 119.99629 * 14 12 10 17 17 H 1.48494 * 109.47074 * 240.00030 * 14 12 10 18 18 C 1.52998 * 109.47248 * 174.26958 * 4 3 2 19 19 C 1.53003 * 109.46760 * 179.97438 * 18 4 3 20 20 C 1.52996 * 109.47434 * 300.00027 * 19 18 4 21 21 C 1.52998 * 109.47169 * 60.00223 * 20 19 18 22 22 C 1.53004 * 109.47248 * 299.99980 * 21 20 19 23 23 H 1.09002 * 109.47044 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47459 * 299.99747 * 1 2 3 25 25 H 1.08992 * 109.47633 * 59.99917 * 1 2 3 26 26 H 1.09003 * 109.47603 * 60.00063 * 3 2 1 27 27 H 1.08995 * 109.47180 * 300.00145 * 3 2 1 28 28 H 1.00904 * 110.99976 * 299.40057 * 5 4 3 29 29 H 1.09002 * 109.47433 * 305.26071 * 6 5 4 30 30 H 1.09002 * 109.47157 * 65.25628 * 6 5 4 31 31 H 1.09001 * 109.47394 * 184.99968 * 7 6 5 32 32 H 1.09009 * 109.46859 * 304.99943 * 7 6 5 33 33 H 1.08998 * 109.47623 * 300.00421 * 9 8 7 34 34 H 1.08998 * 109.47145 * 60.00496 * 9 8 7 35 35 H 0.97003 * 119.99306 * 179.97438 * 13 12 10 36 36 H 1.09007 * 109.46701 * 60.00202 * 18 4 3 37 37 H 1.08992 * 109.47458 * 300.00219 * 18 4 3 38 38 H 1.09007 * 109.46730 * 180.02562 * 19 18 4 39 39 H 1.08998 * 109.46912 * 60.00697 * 19 18 4 40 40 H 1.09002 * 109.47154 * 180.02562 * 20 19 18 41 41 H 1.09004 * 109.46986 * 300.00499 * 20 19 18 42 42 H 1.08998 * 109.46839 * 59.99537 * 21 20 19 43 43 H 1.08993 * 109.47425 * 180.02562 * 21 20 19 44 44 H 1.09008 * 109.46998 * 300.00327 * 22 21 20 45 45 H 1.08994 * 109.47375 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9592 0.3400 -1.1253 6 6 3.6018 0.9558 -2.4102 7 6 3.9391 -0.0083 -3.5492 8 8 3.1174 -1.1729 -3.4465 9 6 3.3534 -2.1428 -4.4691 10 6 2.4371 -3.3216 -4.2645 11 1 1.7436 -3.3292 -3.4367 12 6 2.4842 -4.3905 -5.1343 13 7 3.3284 -4.3809 -6.1427 14 14 1.3480 -5.8513 -4.8811 15 1 0.5004 -5.6177 -3.6843 16 1 0.4825 -6.0182 -6.0763 17 1 2.1581 -7.0796 -4.6811 18 6 4.1570 2.5754 -0.1447 19 6 5.6823 2.4546 -0.1447 20 6 6.1439 1.8233 1.1703 21 6 5.5223 0.4327 1.3143 22 6 3.9971 0.5534 1.3144 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6885 1.8465 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 3.5694 -0.5874 -1.0479 29 1 2.5341 1.1748 -2.4237 30 1 4.1640 1.8808 -2.5386 31 1 3.7572 0.4816 -4.5058 32 1 4.9882 -0.2968 -3.4824 33 1 3.1591 -1.6970 -5.4446 34 1 4.3903 -2.4756 -4.4218 35 1 3.3618 -5.1331 -6.7543 36 1 3.8425 3.2021 0.6899 37 1 3.8278 3.0253 -1.0812 38 1 6.1251 3.4454 -0.2468 39 1 5.9971 1.8278 -0.9790 40 1 7.2306 1.7377 1.1704 41 1 5.8290 2.4502 2.0046 42 1 5.8371 -0.1941 0.4800 43 1 5.8508 -0.0169 2.2513 44 1 3.6822 1.1803 2.1487 45 1 3.5542 -0.4373 1.4165 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595910235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:27 Heat of formation + Delta-G solvation = -114.431752 kcal Electronic energy + Delta-G solvation = -22321.538891 eV Core-core repulsion = 19145.250121 eV Total energy + Delta-G solvation = -3176.288770 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.84006 -37.16091 -36.73526 -34.21683 -32.64170 -31.04993 -30.55539 -27.76086 -27.03586 -26.31758 -25.05602 -22.82954 -22.25194 -21.45666 -20.65083 -18.85332 -16.42689 -16.29043 -16.02319 -15.83649 -15.56044 -15.10153 -15.01191 -14.47550 -14.23621 -13.94056 -13.54998 -13.34303 -13.10097 -12.81491 -12.17740 -12.08796 -12.02420 -11.81846 -11.70953 -11.48229 -11.21235 -11.13841 -10.95693 -10.75042 -10.73113 -10.48771 -10.39950 -10.10086 -9.93456 -9.88826 -9.55183 -9.03405 -8.76903 -8.10827 -7.99820 -6.06846 -4.07773 3.31410 3.37766 3.44365 3.75229 4.38929 4.49938 4.73574 4.78788 4.94653 5.03128 5.14676 5.23428 5.29809 5.35013 5.37501 5.42168 5.48435 5.49934 5.56644 5.62391 5.67152 5.70374 5.78889 5.80378 5.90118 5.92631 6.07365 6.15414 6.23916 6.29438 6.33855 6.38631 6.42748 6.46202 6.65037 7.16997 7.19843 7.42870 7.49695 7.84417 7.88386 8.21094 8.64842 9.06705 9.56927 11.04868 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.020427 B = 0.004513 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.383723 B = 6203.346123 C = 6756.053626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.378 6.378 3 C 0.031 3.969 4 C 0.121 3.879 5 N -0.664 5.664 6 C 0.062 3.938 7 C 0.062 3.938 8 O -0.394 6.394 9 C 0.197 3.803 10 C -0.510 4.510 11 H 0.066 0.934 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.906 3.094 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.106 4.106 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.113 4.113 22 C -0.100 4.100 23 H 0.087 0.913 24 H 0.034 0.966 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.364 0.636 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.044 0.956 33 H 0.002 0.998 34 H 0.005 0.995 35 H 0.262 0.738 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.973 14.944 14.257 20.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.296 6.296 3 C -0.048 4.048 4 C 0.029 3.971 5 N -0.298 5.298 6 C -0.067 4.067 7 C -0.016 4.016 8 O -0.314 6.314 9 C 0.123 3.877 10 C -0.549 4.549 11 H 0.084 0.916 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.733 3.267 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.144 4.144 19 C -0.147 4.147 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.138 4.138 23 H 0.106 0.894 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.186 0.814 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.020 0.980 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.645 14.864 14.234 20.646 hybrid contribution -1.652 -0.599 -0.336 1.789 sum -0.007 14.265 13.898 19.916 Atomic orbital electron populations 1.22695 0.81141 1.02936 0.99254 1.87898 1.19533 1.26947 1.95210 1.23303 0.96231 0.85496 0.99758 1.20952 0.89016 0.94128 0.92988 1.60682 1.62610 1.06629 0.99836 1.22005 0.98562 0.96766 0.89364 1.22286 0.95126 0.88335 0.95847 1.87833 1.60892 1.28719 1.53961 1.20157 0.96246 0.86003 0.85332 1.21102 1.20356 1.01068 1.12333 0.91557 1.24942 0.96063 0.98593 0.94938 1.69979 1.36657 1.31698 1.15548 0.86309 0.80381 0.81833 0.78136 1.19518 1.20940 1.20856 1.21553 0.96628 0.94803 1.01403 1.21392 0.94411 1.00019 0.98904 1.21479 0.99636 0.96775 0.97276 1.21434 0.94784 0.97077 1.01746 1.21467 0.96362 1.01109 0.94856 0.89438 0.94756 0.94232 0.93791 0.93407 0.81429 0.94877 0.90840 0.94525 0.93744 0.98014 0.97720 0.92795 0.92160 0.91941 0.92980 0.90268 0.92520 0.93014 0.90226 0.93012 0.92483 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 11.01 101.05 1.11 1.57 16 2 O -0.38 -5.73 9.49 -35.23 -0.33 -6.06 16 3 C 0.03 0.39 4.38 37.16 0.16 0.56 16 4 C 0.12 1.51 0.38 -131.59 -0.05 1.45 16 5 N -0.66 -10.04 4.56 -99.96 -0.46 -10.49 16 6 C 0.06 0.96 5.27 -3.83 -0.02 0.94 16 7 C 0.06 1.19 6.26 37.15 0.23 1.42 16 8 O -0.39 -9.62 9.77 -35.23 -0.34 -9.97 16 9 C 0.20 5.51 5.69 36.01 0.20 5.71 16 10 C -0.51 -15.25 9.43 -34.44 -0.32 -15.58 16 11 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 14 Si 0.91 22.15 29.54 -169.99 -5.02 17.13 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 C -0.11 -1.12 4.25 -26.73 -0.11 -1.23 16 19 C -0.11 -1.14 5.77 -26.73 -0.15 -1.30 16 20 C -0.11 -1.14 5.92 -26.73 -0.16 -1.30 16 21 C -0.11 -1.28 5.77 -26.73 -0.15 -1.43 16 22 C -0.10 -1.19 4.78 -26.73 -0.13 -1.32 16 23 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 24 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.62 6.66 -51.93 -0.35 0.27 16 28 H 0.36 6.63 7.47 -39.29 -0.29 6.33 16 29 H 0.03 0.54 6.27 -51.93 -0.33 0.21 16 30 H 0.07 0.97 6.56 -51.93 -0.34 0.63 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 33 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.00 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.06 0.66 6.47 -51.93 -0.34 0.32 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.96 7.60 -51.93 -0.39 0.57 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 1.05 7.60 -51.93 -0.39 0.66 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 45 H 0.07 0.93 7.84 -51.93 -0.41 0.53 16 LS Contribution 348.95 15.07 5.26 5.26 Total: -1.00 -31.00 348.95 -7.95 -38.95 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -8.30 Total: 0.73 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 0.51 Total: -8.97 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.28 Total: -37.06 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.68 Total: -16.03 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.00 -7.95 -38.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595910235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.486 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds