Wall clock time and date at job start Mon Mar 30 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99736 * 2 1 4 4 C 1.53004 * 109.47292 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.46864 * 54.26959 * 4 3 2 6 6 C 1.46894 * 111.00068 * 63.35730 * 5 4 3 7 7 C 1.52994 * 109.47292 * 185.25838 * 6 5 4 8 8 O 1.42901 * 109.47202 * 64.99715 * 7 6 5 9 9 C 1.42897 * 114.00017 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47013 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00317 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99817 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99688 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99825 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47361 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47195 * 119.99629 * 14 12 10 17 17 H 1.48494 * 109.47074 * 240.00030 * 14 12 10 18 18 C 1.52998 * 109.47248 * 174.26958 * 4 3 2 19 19 C 1.53003 * 109.46760 * 179.97438 * 18 4 3 20 20 C 1.52996 * 109.47434 * 300.00027 * 19 18 4 21 21 C 1.52998 * 109.47169 * 60.00223 * 20 19 18 22 22 C 1.53004 * 109.47248 * 299.99980 * 21 20 19 23 23 H 1.09002 * 109.47044 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47459 * 299.99747 * 1 2 3 25 25 H 1.08992 * 109.47633 * 59.99917 * 1 2 3 26 26 H 1.09003 * 109.47603 * 60.00063 * 3 2 1 27 27 H 1.08995 * 109.47180 * 300.00145 * 3 2 1 28 28 H 1.00904 * 110.99976 * 299.40057 * 5 4 3 29 29 H 1.09002 * 109.47433 * 305.26071 * 6 5 4 30 30 H 1.09002 * 109.47157 * 65.25628 * 6 5 4 31 31 H 1.09001 * 109.47394 * 184.99968 * 7 6 5 32 32 H 1.09009 * 109.46859 * 304.99943 * 7 6 5 33 33 H 1.08998 * 109.47623 * 300.00421 * 9 8 7 34 34 H 1.08998 * 109.47145 * 60.00496 * 9 8 7 35 35 H 0.97003 * 119.99306 * 179.97438 * 13 12 10 36 36 H 1.09007 * 109.46701 * 60.00202 * 18 4 3 37 37 H 1.08992 * 109.47458 * 300.00219 * 18 4 3 38 38 H 1.09007 * 109.46730 * 180.02562 * 19 18 4 39 39 H 1.08998 * 109.46912 * 60.00697 * 19 18 4 40 40 H 1.09002 * 109.47154 * 180.02562 * 20 19 18 41 41 H 1.09004 * 109.46986 * 300.00499 * 20 19 18 42 42 H 1.08998 * 109.46839 * 59.99537 * 21 20 19 43 43 H 1.08993 * 109.47425 * 180.02562 * 21 20 19 44 44 H 1.09008 * 109.46998 * 300.00327 * 22 21 20 45 45 H 1.08994 * 109.47375 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9592 0.3400 -1.1253 6 6 3.6018 0.9558 -2.4102 7 6 3.9391 -0.0083 -3.5492 8 8 3.1174 -1.1729 -3.4465 9 6 3.3534 -2.1428 -4.4691 10 6 2.4371 -3.3216 -4.2645 11 1 1.7436 -3.3292 -3.4367 12 6 2.4842 -4.3905 -5.1343 13 7 3.3284 -4.3809 -6.1427 14 14 1.3480 -5.8513 -4.8811 15 1 0.5004 -5.6177 -3.6843 16 1 0.4825 -6.0182 -6.0763 17 1 2.1581 -7.0796 -4.6811 18 6 4.1570 2.5754 -0.1447 19 6 5.6823 2.4546 -0.1447 20 6 6.1439 1.8233 1.1703 21 6 5.5223 0.4327 1.3143 22 6 3.9971 0.5534 1.3144 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6885 1.8465 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 3.5694 -0.5874 -1.0479 29 1 2.5341 1.1748 -2.4237 30 1 4.1640 1.8808 -2.5386 31 1 3.7572 0.4816 -4.5058 32 1 4.9882 -0.2968 -3.4824 33 1 3.1591 -1.6970 -5.4446 34 1 4.3903 -2.4756 -4.4218 35 1 3.3618 -5.1331 -6.7543 36 1 3.8425 3.2021 0.6899 37 1 3.8278 3.0253 -1.0812 38 1 6.1251 3.4454 -0.2468 39 1 5.9971 1.8278 -0.9790 40 1 7.2306 1.7377 1.1704 41 1 5.8290 2.4502 2.0046 42 1 5.8371 -0.1941 0.4800 43 1 5.8508 -0.0169 2.2513 44 1 3.6822 1.1803 2.1487 45 1 3.5542 -0.4373 1.4165 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595910235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:27 Heat of formation + Delta-G solvation = -134.710927 kcal Electronic energy + Delta-G solvation = -22322.418262 eV Core-core repulsion = 19145.250121 eV Total energy + Delta-G solvation = -3177.168141 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.85357 -38.60042 -38.15141 -35.53026 -34.74621 -32.16931 -31.54122 -29.60558 -28.15311 -27.85859 -26.02665 -24.53982 -23.77522 -22.67691 -21.65692 -19.82665 -18.64563 -17.51090 -17.35000 -17.00202 -16.83961 -16.58283 -16.31496 -16.24258 -15.54806 -15.14089 -14.90181 -14.49713 -14.33602 -14.08953 -13.65403 -13.39665 -13.17416 -12.94381 -12.87476 -12.83045 -12.75389 -12.54868 -12.43326 -12.26231 -12.17419 -11.87193 -11.70528 -11.31819 -11.25699 -10.98626 -10.88245 -10.79220 -10.56682 -10.21171 -9.18148 -8.32239 -6.44146 1.38770 1.40508 1.55124 2.34499 2.75727 3.01590 3.24277 3.37929 3.78717 3.88548 4.03368 4.21291 4.27929 4.30208 4.38093 4.41979 4.49312 4.51348 4.52975 4.58168 4.63344 4.70937 4.75098 4.81104 4.82310 4.83839 4.85931 4.98744 5.04078 5.14477 5.18954 5.20615 5.41862 5.46418 5.47872 5.52268 5.55377 5.75015 5.96612 6.17661 6.32671 6.50940 6.54860 6.83476 7.27828 8.80499 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.020427 B = 0.004513 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.383723 B = 6203.346123 C = 6756.053626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.408 6.408 3 C 0.030 3.970 4 C 0.118 3.882 5 N -0.667 5.667 6 C 0.076 3.924 7 C 0.054 3.946 8 O -0.405 6.405 9 C 0.212 3.788 10 C -0.544 4.544 11 H 0.059 0.941 12 C 0.007 3.993 13 N -0.931 5.931 14 Si 0.983 3.017 15 H -0.265 1.265 16 H -0.270 1.270 17 H -0.271 1.271 18 C -0.103 4.103 19 C -0.109 4.109 20 C -0.110 4.110 21 C -0.112 4.112 22 C -0.096 4.096 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.037 0.963 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.343 0.657 29 H 0.027 0.973 30 H 0.103 0.897 31 H 0.044 0.956 32 H 0.042 0.958 33 H -0.017 1.017 34 H -0.017 1.017 35 H 0.270 0.730 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.414 15.932 15.602 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.328 6.328 3 C -0.048 4.048 4 C 0.027 3.973 5 N -0.298 5.298 6 C -0.053 4.053 7 C -0.023 4.023 8 O -0.324 6.324 9 C 0.137 3.863 10 C -0.582 4.582 11 H 0.078 0.922 12 C -0.192 4.192 13 N -0.571 5.571 14 Si 0.805 3.195 15 H -0.189 1.189 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.140 4.140 19 C -0.146 4.146 20 C -0.148 4.148 21 C -0.149 4.149 22 C -0.134 4.134 23 H 0.101 0.899 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.162 0.838 29 H 0.045 0.955 30 H 0.121 0.879 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.001 0.999 34 H 0.001 0.999 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.098 15.892 15.586 22.286 hybrid contribution -1.425 -0.843 -0.741 1.815 sum -0.327 15.049 14.844 21.141 Atomic orbital electron populations 1.22795 0.80115 1.03102 1.00365 1.87867 1.20903 1.28562 1.95421 1.23391 0.96109 0.84752 1.00572 1.21128 0.89266 0.94845 0.92056 1.60731 1.62562 1.05979 1.00572 1.21934 0.98581 0.96474 0.88355 1.22600 0.94356 0.87227 0.98095 1.87804 1.62074 1.29802 1.52767 1.19767 0.94652 0.86539 0.85316 1.21388 1.21250 1.02575 1.12947 0.92234 1.25948 0.97517 1.01570 0.94122 1.70082 1.37832 1.32970 1.16172 0.85147 0.78191 0.77568 0.78561 1.18923 1.19562 1.19637 1.21570 0.96504 0.93498 1.02466 1.21379 0.94400 1.00558 0.98293 1.21459 0.99839 0.95818 0.97659 1.21398 0.94572 0.97862 1.01081 1.21437 0.96521 1.00239 0.95216 0.89873 0.92230 0.94445 0.91597 0.93769 0.83814 0.95519 0.87885 0.93778 0.94008 0.99910 0.99922 0.92073 0.89993 0.91733 0.91182 0.92445 0.92064 0.91321 0.92857 0.92189 0.90494 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.41 -12.33 9.49 -148.98 -1.41 -13.75 16 3 C 0.03 0.72 4.38 71.98 0.32 1.04 16 4 C 0.12 2.80 0.38 3.53 0.00 2.80 16 5 N -0.67 -20.30 4.56 -470.17 -2.15 -22.45 16 6 C 0.08 2.32 5.27 86.30 0.46 2.78 16 7 C 0.05 2.13 6.26 71.98 0.45 2.58 16 8 O -0.40 -20.49 9.77 -148.98 -1.46 -21.94 16 9 C 0.21 12.37 5.69 71.24 0.41 12.78 16 10 C -0.54 -33.33 9.43 25.60 0.24 -33.09 16 11 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 12 C 0.01 0.40 5.46 84.66 0.46 0.86 16 13 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 14 Si 0.98 45.37 29.54 68.60 2.03 47.40 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 C -0.10 -1.89 4.25 30.59 0.13 -1.76 16 19 C -0.11 -2.01 5.77 30.59 0.18 -1.84 16 20 C -0.11 -1.95 5.92 30.59 0.18 -1.77 16 21 C -0.11 -2.43 5.77 30.60 0.18 -2.25 16 22 C -0.10 -2.18 4.78 30.60 0.15 -2.03 16 23 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.04 1.09 6.66 -2.39 -0.02 1.07 16 28 H 0.34 12.98 7.47 -89.69 -0.67 12.31 16 29 H 0.03 0.86 6.27 -2.39 -0.01 0.85 16 30 H 0.10 2.57 6.56 -2.39 -0.02 2.56 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 33 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 34 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 35 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.06 1.17 6.47 -2.39 -0.02 1.16 16 38 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.06 1.32 7.60 -2.39 -0.02 1.31 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.05 1.44 7.60 -2.39 -0.02 1.42 16 43 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.05 1.27 7.84 -2.39 -0.02 1.25 16 Total: -1.00 -67.76 348.95 1.95 -65.80 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.27 Total: 19.65 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 4.39 Total: -17.87 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -1.86 Total: -79.29 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -2.87 Total: -35.69 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -67.76 1.95 -65.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595910235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.909 kcal (2) G-P(sol) polarization free energy of solvation -67.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds