Wall clock time and date at job start Mon Mar 30 2020 04:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00323 * 2 1 4 4 C 1.52996 * 109.47458 * 174.32448 * 3 2 1 5 5 N 1.46899 * 109.47169 * 78.75556 * 4 3 2 6 6 C 1.46899 * 110.99824 * 283.73063 * 5 4 3 7 7 C 1.50703 * 109.47087 * 86.47739 * 6 5 4 8 8 H 1.07997 * 119.99867 * 240.50564 * 7 6 5 9 9 C 1.37885 * 119.99915 * 60.51133 * 7 6 5 10 10 N 1.31504 * 119.99907 * 7.68586 * 9 7 6 11 11 Si 1.86804 * 119.99595 * 187.41675 * 9 7 6 12 12 H 1.48500 * 109.46464 * 185.15174 * 11 9 7 13 13 H 1.48500 * 109.47062 * 305.14838 * 11 9 7 14 14 H 1.48493 * 109.47301 * 65.15057 * 11 9 7 15 15 C 1.46905 * 111.00416 * 159.77938 * 5 4 3 16 16 C 1.53005 * 109.46615 * 288.00641 * 15 5 4 17 17 H 1.08998 * 109.54240 * 55.28013 * 16 15 5 18 18 C 1.53181 * 109.54385 * 295.10180 * 16 15 5 19 19 C 1.53087 * 109.16444 * 183.15882 * 18 16 15 20 20 O 1.42900 * 109.41687 * 57.60199 * 19 18 16 21 21 C 1.42908 * 114.10227 * 298.84598 * 20 19 18 22 22 H 1.09002 * 109.47790 * 301.16200 * 21 20 19 23 23 C 1.52996 * 109.48084 * 181.13883 * 21 20 19 24 24 C 1.53107 * 109.48280 * 61.10933 * 21 20 19 25 25 H 1.09002 * 109.46901 * 64.84097 * 1 2 3 26 26 H 1.08996 * 109.47101 * 184.84230 * 1 2 3 27 27 H 1.09000 * 109.46934 * 304.84399 * 1 2 3 28 28 H 1.08998 * 109.47502 * 54.32514 * 3 2 1 29 29 H 1.09000 * 109.47385 * 294.32355 * 3 2 1 30 30 H 1.08996 * 109.47152 * 318.75476 * 4 3 2 31 31 H 1.09005 * 109.47528 * 198.75267 * 4 3 2 32 32 H 1.08995 * 109.47416 * 326.47378 * 6 5 4 33 33 H 1.09000 * 109.47284 * 206.47641 * 6 5 4 34 34 H 0.97000 * 120.00595 * 356.23148 * 10 9 7 35 35 H 1.08993 * 109.47030 * 48.00147 * 15 5 4 36 36 H 1.08996 * 109.47374 * 168.00792 * 15 5 4 37 37 H 1.09007 * 109.51642 * 303.06116 * 18 16 15 38 38 H 1.09002 * 109.52111 * 63.18293 * 18 16 15 39 39 H 1.08989 * 109.48235 * 177.59403 * 19 18 16 40 40 H 1.09004 * 109.47558 * 297.61560 * 19 18 16 41 41 H 1.09005 * 109.47045 * 60.00172 * 23 21 20 42 42 H 1.09000 * 109.46868 * 180.02562 * 23 21 20 43 43 H 1.08999 * 109.47445 * 299.99918 * 23 21 20 44 44 H 1.09002 * 109.59289 * 182.57847 * 24 21 20 45 45 H 1.09000 * 109.45212 * 62.39205 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5290 1.1875 0.1426 5 7 4.1160 0.8260 -1.1545 6 6 3.9011 -0.5965 -1.4516 7 6 2.5620 -0.7733 -2.1199 8 1 1.8050 -1.3896 -1.6578 9 6 2.3032 -0.1483 -3.3214 10 7 3.2689 0.4765 -3.9589 11 14 0.5826 -0.1955 -4.0472 12 1 0.5949 0.4363 -5.3911 13 1 0.1347 -1.6062 -4.1675 14 1 -0.3493 0.5459 -3.1602 15 6 5.5453 1.1627 -1.1977 16 6 5.7091 2.6816 -1.2824 17 1 5.1814 3.1520 -0.4527 18 6 5.1323 3.1861 -2.6087 19 6 5.3712 4.6941 -2.7194 20 8 6.7712 4.9620 -2.6188 21 6 7.3558 4.5547 -1.3799 22 1 6.8551 5.0646 -0.5568 23 6 8.8427 4.9150 -1.3745 24 6 7.1965 3.0411 -1.2133 25 1 -0.3633 0.4369 -0.9302 26 1 -0.3633 -1.0240 0.0867 27 1 -0.3633 0.5872 0.8434 28 1 1.6106 1.8811 0.8348 29 1 1.7714 1.8095 -0.9364 30 1 3.7662 0.4170 0.8762 31 1 3.9382 2.1422 0.4732 32 1 3.9227 -1.1686 -0.5242 33 1 4.6886 -0.9519 -2.1161 34 1 4.1498 0.5447 -3.5584 35 1 6.0328 0.7944 -0.2951 36 1 6.0016 0.6988 -2.0722 37 1 5.6253 2.6774 -3.4372 38 1 4.0619 2.9824 -2.6413 39 1 5.0008 5.0513 -3.6802 40 1 4.8443 5.2056 -1.9138 41 1 8.9558 5.9927 -1.4926 42 1 9.2884 4.6039 -0.4297 43 1 9.3432 4.4048 -2.1974 44 1 7.6008 2.7350 -0.2485 45 1 7.7325 2.5295 -2.0128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611518761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:00 Heat of formation + Delta-G solvation = -94.492186 kcal Electronic energy + Delta-G solvation = -23081.087708 eV Core-core repulsion = 19905.663582 eV Total energy + Delta-G solvation = -3175.424125 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.34448 -37.56874 -36.05006 -33.52467 -32.51567 -32.01975 -29.12216 -27.84796 -26.69097 -25.58125 -24.16367 -22.74966 -22.28605 -21.25111 -20.11105 -19.28732 -16.65413 -16.05649 -15.77095 -15.46553 -15.11568 -14.91749 -14.33539 -14.15859 -13.88766 -13.61911 -13.53774 -13.16149 -12.79339 -12.34530 -12.22071 -11.96941 -11.87223 -11.52622 -11.46650 -11.20732 -11.11197 -10.81892 -10.68722 -10.62604 -10.30921 -10.20590 -10.03165 -9.95117 -9.77885 -9.54341 -9.10898 -8.62910 -8.48610 -7.96031 -6.99813 -5.98296 -3.64615 3.50791 3.53535 3.72470 4.01445 4.68970 4.72740 4.77851 5.03847 5.16584 5.20830 5.28293 5.47030 5.62722 5.67107 5.70218 5.76792 5.77562 5.81944 5.88655 5.91120 5.97607 6.02564 6.10288 6.12501 6.19476 6.24703 6.28168 6.31845 6.33336 6.43890 6.48759 6.59877 6.79429 6.87001 7.05852 7.09684 7.15573 7.54183 8.12476 8.21438 8.33578 8.69513 8.89340 9.27586 10.07047 11.41048 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.021975 B = 0.005926 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.889830 B = 4723.901674 C = 5229.030082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.349 6.349 3 C 0.083 3.917 4 C 0.067 3.933 5 N -0.516 5.516 6 C 0.181 3.819 7 C -0.557 4.557 8 H 0.051 0.949 9 C 0.034 3.966 10 N -0.904 5.904 11 Si 1.052 2.948 12 H -0.289 1.289 13 H -0.294 1.294 14 H -0.292 1.292 15 C 0.061 3.939 16 C -0.080 4.080 17 H 0.061 0.939 18 C -0.133 4.133 19 C 0.061 3.939 20 O -0.386 6.386 21 C 0.089 3.911 22 H 0.051 0.949 23 C -0.143 4.143 24 C -0.144 4.144 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.058 0.942 30 H 0.025 0.975 31 H 0.062 0.938 32 H -0.007 1.007 33 H 0.009 0.991 34 H 0.278 0.722 35 H 0.012 0.988 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.041 0.959 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 7.510 7.292 11.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.006 3.994 4 C -0.061 4.061 5 N -0.242 5.242 6 C 0.058 3.942 7 C -0.597 4.597 8 H 0.069 0.931 9 C -0.173 4.173 10 N -0.540 5.540 11 Si 0.883 3.117 12 H -0.214 1.214 13 H -0.221 1.221 14 H -0.220 1.220 15 C -0.068 4.068 16 C -0.099 4.099 17 H 0.079 0.921 18 C -0.170 4.170 19 C -0.015 4.015 20 O -0.306 6.306 21 C 0.031 3.969 22 H 0.069 0.931 23 C -0.201 4.201 24 C -0.182 4.182 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.011 0.989 33 H 0.027 0.973 34 H 0.090 0.910 35 H 0.030 0.970 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.327 8.126 5.459 10.339 hybrid contribution 0.764 -0.781 2.259 2.509 sum 4.091 7.345 7.718 11.413 Atomic orbital electron populations 1.22567 0.84020 1.01119 0.98749 1.88264 1.16966 1.26629 1.94796 1.22240 0.93243 0.85357 0.98580 1.21960 0.93961 0.98677 0.91548 1.62776 1.09975 1.24262 1.27192 1.19906 0.97976 0.82434 0.93921 1.21747 0.99330 1.32010 1.06567 0.93106 1.25323 1.03577 0.94257 0.94145 1.70621 1.03718 1.40878 1.38825 0.83845 0.76119 0.75782 0.75910 1.21446 1.22073 1.21962 1.22101 0.91578 0.94094 0.99017 1.21192 0.93812 0.96680 0.98258 0.92085 1.22043 1.04188 0.93826 0.96973 1.22665 0.80978 0.96578 1.01293 1.87869 1.23354 1.82528 1.36836 1.21995 0.94056 0.94049 0.86831 0.93143 1.21758 0.94193 1.01924 1.02194 1.22270 0.97799 0.96144 1.02034 0.94453 0.90978 0.96131 0.96163 0.92394 0.95660 0.91945 0.98910 0.97264 0.91013 0.97031 0.91591 0.91340 0.88555 0.89231 0.94094 0.92233 0.91473 0.91894 0.91761 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.96 101.05 1.11 1.70 16 2 O -0.35 -7.60 6.90 -35.23 -0.24 -7.84 16 3 C 0.08 1.67 5.64 37.16 0.21 1.88 16 4 C 0.07 1.32 5.27 -3.83 -0.02 1.30 16 5 N -0.52 -11.34 2.88 -236.07 -0.68 -12.02 16 6 C 0.18 4.59 4.36 -4.98 -0.02 4.57 16 7 C -0.56 -15.22 6.53 -34.44 -0.23 -15.44 16 8 H 0.05 1.44 6.72 -52.49 -0.35 1.08 16 9 C 0.03 0.94 5.34 -17.82 -0.10 0.84 16 10 N -0.90 -26.09 13.54 55.43 0.75 -25.34 16 11 Si 1.05 25.29 29.91 -169.99 -5.08 20.20 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -6.67 6.47 56.52 0.37 -6.30 16 15 C 0.06 1.16 4.10 -3.82 -0.02 1.15 16 16 C -0.08 -1.34 2.28 -90.43 -0.21 -1.54 16 17 H 0.06 1.00 6.43 -51.93 -0.33 0.66 16 18 C -0.13 -2.41 5.27 -26.59 -0.14 -2.55 16 19 C 0.06 0.96 6.84 37.20 0.25 1.21 16 20 O -0.39 -6.15 10.41 -35.23 -0.37 -6.51 16 21 C 0.09 1.19 3.26 -26.68 -0.09 1.11 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 C -0.14 -1.58 9.56 37.16 0.36 -1.22 16 24 C -0.14 -2.05 4.71 -26.59 -0.13 -2.17 16 25 H 0.04 0.72 7.51 -51.93 -0.39 0.33 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.02 0.31 8.11 -51.93 -0.42 -0.11 16 28 H 0.02 0.35 8.11 -51.93 -0.42 -0.07 16 29 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 30 H 0.03 0.51 7.62 -51.93 -0.40 0.12 16 31 H 0.06 1.08 6.19 -51.93 -0.32 0.76 16 32 H -0.01 -0.19 7.51 -51.93 -0.39 -0.58 16 33 H 0.01 0.25 7.11 -51.93 -0.37 -0.12 16 34 H 0.28 7.93 6.33 -40.82 -0.26 7.67 16 35 H 0.01 0.21 8.05 -51.93 -0.42 -0.21 16 36 H 0.07 1.37 7.54 -51.93 -0.39 0.98 16 37 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 38 H 0.10 2.04 7.85 -51.93 -0.41 1.64 16 39 H 0.09 1.34 8.14 -51.94 -0.42 0.92 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 343.12 15.07 5.17 5.17 Total: -1.00 -29.36 343.12 -7.82 -37.17 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -8.35 Total: -1.67 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 0.99 Total: -9.16 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.07 Total: -37.36 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.61 Total: -14.35 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.08 Total: 20.20 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.36 -7.82 -37.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611518761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.320 kcal (2) G-P(sol) polarization free energy of solvation -29.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds