Wall clock time and date at job start Mon Mar 30 2020 04:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00323 * 2 1 4 4 C 1.52996 * 109.47458 * 174.32448 * 3 2 1 5 5 N 1.46899 * 109.47169 * 78.75556 * 4 3 2 6 6 C 1.46899 * 110.99824 * 283.73063 * 5 4 3 7 7 C 1.50703 * 109.47087 * 86.47739 * 6 5 4 8 8 H 1.07997 * 119.99867 * 240.50564 * 7 6 5 9 9 C 1.37885 * 119.99915 * 60.51133 * 7 6 5 10 10 N 1.31504 * 119.99907 * 7.68586 * 9 7 6 11 11 Si 1.86804 * 119.99595 * 187.41675 * 9 7 6 12 12 H 1.48500 * 109.46464 * 185.15174 * 11 9 7 13 13 H 1.48500 * 109.47062 * 305.14838 * 11 9 7 14 14 H 1.48493 * 109.47301 * 65.15057 * 11 9 7 15 15 C 1.46905 * 111.00416 * 159.77938 * 5 4 3 16 16 C 1.53005 * 109.46615 * 288.00641 * 15 5 4 17 17 H 1.08998 * 109.54240 * 55.28013 * 16 15 5 18 18 C 1.53181 * 109.54385 * 295.10180 * 16 15 5 19 19 C 1.53087 * 109.16444 * 183.15882 * 18 16 15 20 20 O 1.42900 * 109.41687 * 57.60199 * 19 18 16 21 21 C 1.42908 * 114.10227 * 298.84598 * 20 19 18 22 22 H 1.09002 * 109.47790 * 301.16200 * 21 20 19 23 23 C 1.52996 * 109.48084 * 181.13883 * 21 20 19 24 24 C 1.53107 * 109.48280 * 61.10933 * 21 20 19 25 25 H 1.09002 * 109.46901 * 64.84097 * 1 2 3 26 26 H 1.08996 * 109.47101 * 184.84230 * 1 2 3 27 27 H 1.09000 * 109.46934 * 304.84399 * 1 2 3 28 28 H 1.08998 * 109.47502 * 54.32514 * 3 2 1 29 29 H 1.09000 * 109.47385 * 294.32355 * 3 2 1 30 30 H 1.08996 * 109.47152 * 318.75476 * 4 3 2 31 31 H 1.09005 * 109.47528 * 198.75267 * 4 3 2 32 32 H 1.08995 * 109.47416 * 326.47378 * 6 5 4 33 33 H 1.09000 * 109.47284 * 206.47641 * 6 5 4 34 34 H 0.97000 * 120.00595 * 356.23148 * 10 9 7 35 35 H 1.08993 * 109.47030 * 48.00147 * 15 5 4 36 36 H 1.08996 * 109.47374 * 168.00792 * 15 5 4 37 37 H 1.09007 * 109.51642 * 303.06116 * 18 16 15 38 38 H 1.09002 * 109.52111 * 63.18293 * 18 16 15 39 39 H 1.08989 * 109.48235 * 177.59403 * 19 18 16 40 40 H 1.09004 * 109.47558 * 297.61560 * 19 18 16 41 41 H 1.09005 * 109.47045 * 60.00172 * 23 21 20 42 42 H 1.09000 * 109.46868 * 180.02562 * 23 21 20 43 43 H 1.08999 * 109.47445 * 299.99918 * 23 21 20 44 44 H 1.09002 * 109.59289 * 182.57847 * 24 21 20 45 45 H 1.09000 * 109.45212 * 62.39205 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5290 1.1875 0.1426 5 7 4.1160 0.8260 -1.1545 6 6 3.9011 -0.5965 -1.4516 7 6 2.5620 -0.7733 -2.1199 8 1 1.8050 -1.3896 -1.6578 9 6 2.3032 -0.1483 -3.3214 10 7 3.2689 0.4765 -3.9589 11 14 0.5826 -0.1955 -4.0472 12 1 0.5949 0.4363 -5.3911 13 1 0.1347 -1.6062 -4.1675 14 1 -0.3493 0.5459 -3.1602 15 6 5.5453 1.1627 -1.1977 16 6 5.7091 2.6816 -1.2824 17 1 5.1814 3.1520 -0.4527 18 6 5.1323 3.1861 -2.6087 19 6 5.3712 4.6941 -2.7194 20 8 6.7712 4.9620 -2.6188 21 6 7.3558 4.5547 -1.3799 22 1 6.8551 5.0646 -0.5568 23 6 8.8427 4.9150 -1.3745 24 6 7.1965 3.0411 -1.2133 25 1 -0.3633 0.4369 -0.9302 26 1 -0.3633 -1.0240 0.0867 27 1 -0.3633 0.5872 0.8434 28 1 1.6106 1.8811 0.8348 29 1 1.7714 1.8095 -0.9364 30 1 3.7662 0.4170 0.8762 31 1 3.9382 2.1422 0.4732 32 1 3.9227 -1.1686 -0.5242 33 1 4.6886 -0.9519 -2.1161 34 1 4.1498 0.5447 -3.5584 35 1 6.0328 0.7944 -0.2951 36 1 6.0016 0.6988 -2.0722 37 1 5.6253 2.6774 -3.4372 38 1 4.0619 2.9824 -2.6413 39 1 5.0008 5.0513 -3.6802 40 1 4.8443 5.2056 -1.9138 41 1 8.9558 5.9927 -1.4926 42 1 9.2884 4.6039 -0.4297 43 1 9.3432 4.4048 -2.1974 44 1 7.6008 2.7350 -0.2485 45 1 7.7325 2.5295 -2.0128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611518761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:59 Heat of formation + Delta-G solvation = -112.220160 kcal Electronic energy + Delta-G solvation = -23081.856450 eV Core-core repulsion = 19905.663582 eV Total energy + Delta-G solvation = -3176.192868 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.63851 -39.17108 -37.64342 -35.12782 -33.96654 -33.57348 -30.72227 -29.34726 -28.26120 -27.03526 -25.78442 -24.18868 -24.04565 -22.66070 -21.58413 -20.73947 -18.69303 -17.39913 -17.19437 -16.81610 -16.66654 -16.37120 -15.80588 -15.61549 -15.40676 -15.31284 -15.23405 -14.60385 -14.46088 -13.77906 -13.51554 -13.37748 -13.10338 -13.05842 -12.84375 -12.72094 -12.67211 -12.48540 -12.19253 -12.03335 -11.98319 -11.77806 -11.68704 -11.54690 -11.30684 -11.10216 -10.63745 -10.29223 -10.26357 -10.01493 -8.78815 -8.15925 -5.84826 1.55287 1.61824 1.80654 2.72763 2.89658 3.17278 3.22382 3.69043 3.74595 3.92072 4.01018 4.09141 4.25777 4.29008 4.38666 4.39649 4.46513 4.51604 4.60614 4.64282 4.65247 4.69606 4.71741 4.79505 4.82674 4.84349 4.90457 4.93355 5.00533 5.02925 5.08699 5.12653 5.19193 5.24469 5.34949 5.46631 5.57261 6.24420 6.36390 6.44185 6.61738 6.75634 6.77721 7.08555 7.92472 9.21756 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.021975 B = 0.005926 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.889830 B = 4723.901674 C = 5229.030082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.085 3.915 4 C 0.067 3.933 5 N -0.527 5.527 6 C 0.193 3.807 7 C -0.558 4.558 8 H 0.039 0.961 9 C -0.005 4.005 10 N -0.927 5.927 11 Si 1.088 2.912 12 H -0.295 1.295 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.065 3.935 16 C -0.071 4.071 17 H 0.074 0.926 18 C -0.123 4.123 19 C 0.068 3.932 20 O -0.400 6.400 21 C 0.083 3.917 22 H 0.066 0.934 23 C -0.140 4.140 24 C -0.138 4.138 25 H 0.022 0.978 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.028 0.972 30 H 0.022 0.978 31 H 0.093 0.907 32 H -0.016 1.016 33 H -0.018 1.018 34 H 0.270 0.730 35 H 0.026 0.974 36 H 0.038 0.962 37 H 0.036 0.964 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.054 0.946 44 H 0.088 0.912 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.198 9.037 9.238 13.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.298 6.298 3 C 0.008 3.992 4 C -0.061 4.061 5 N -0.253 5.253 6 C 0.068 3.932 7 C -0.597 4.597 8 H 0.058 0.942 9 C -0.207 4.207 10 N -0.565 5.565 11 Si 0.915 3.085 12 H -0.222 1.222 13 H -0.209 1.209 14 H -0.200 1.200 15 C -0.063 4.063 16 C -0.090 4.090 17 H 0.093 0.907 18 C -0.161 4.161 19 C -0.008 4.008 20 O -0.320 6.320 21 C 0.025 3.975 22 H 0.084 0.916 23 C -0.197 4.197 24 C -0.176 4.176 25 H 0.040 0.960 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.111 0.889 32 H 0.002 0.998 33 H 0.000 1.000 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.107 0.893 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.293 9.654 7.428 12.618 hybrid contribution 0.806 -1.300 1.715 2.298 sum 4.099 8.353 9.144 13.046 Atomic orbital electron populations 1.22703 0.82302 1.02393 0.99304 1.88195 1.19000 1.27686 1.94956 1.22269 0.93464 0.84998 0.98507 1.22078 0.94024 0.99948 0.90022 1.62492 1.11969 1.21654 1.29145 1.19646 0.96370 0.84478 0.92726 1.21805 0.99537 1.31608 1.06752 0.94232 1.26336 1.05794 0.93795 0.94778 1.70709 1.03883 1.42548 1.39354 0.83355 0.73377 0.76497 0.75248 1.22166 1.20884 1.19962 1.22078 0.89810 0.96017 0.98397 1.21115 0.95903 0.94388 0.97602 0.90744 1.21854 1.01556 0.95789 0.96879 1.22563 0.81541 0.94465 1.02238 1.87869 1.23140 1.82507 1.38484 1.22247 0.95701 0.93226 0.86298 0.91596 1.21770 0.92261 1.02412 1.03234 1.22233 0.95474 0.96983 1.02887 0.95962 0.89928 0.92893 0.92456 0.95373 0.95939 0.88918 0.99761 0.99962 0.91901 0.95553 0.94291 0.94504 0.91956 0.89083 0.92226 0.91459 0.89099 0.92651 0.89346 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 10.96 113.37 1.24 2.27 16 2 O -0.38 -16.18 6.90 -148.98 -1.03 -17.21 16 3 C 0.08 3.28 5.64 71.98 0.41 3.69 16 4 C 0.07 2.56 5.27 86.30 0.45 3.02 16 5 N -0.53 -23.40 2.88 -900.80 -2.60 -26.00 16 6 C 0.19 10.06 4.36 85.56 0.37 10.43 16 7 C -0.56 -31.09 6.53 25.60 0.17 -30.92 16 8 H 0.04 2.26 6.72 -2.91 -0.02 2.24 16 9 C -0.01 -0.28 5.34 84.66 0.45 0.17 16 10 N -0.93 -55.26 13.54 21.45 0.29 -54.97 16 11 Si 1.09 51.41 29.91 68.60 2.05 53.46 16 12 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.27 -11.99 6.47 99.48 0.64 -11.34 16 15 C 0.07 2.51 4.10 86.30 0.35 2.86 16 16 C -0.07 -2.29 2.28 -10.67 -0.02 -2.31 16 17 H 0.07 2.22 6.43 -2.39 -0.02 2.20 16 18 C -0.12 -4.52 5.27 30.68 0.16 -4.36 16 19 C 0.07 2.08 6.84 72.01 0.49 2.57 16 20 O -0.40 -12.08 10.41 -148.98 -1.55 -13.63 16 21 C 0.08 2.00 3.26 30.63 0.10 2.10 16 22 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 23 C -0.14 -2.65 9.56 71.98 0.69 -1.96 16 24 C -0.14 -3.63 4.71 30.69 0.14 -3.48 16 25 H 0.02 0.82 7.51 -2.39 -0.02 0.80 16 26 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.05 1.47 8.11 -2.39 -0.02 1.45 16 28 H 0.06 1.79 8.11 -2.39 -0.02 1.77 16 29 H 0.03 1.25 8.13 -2.39 -0.02 1.23 16 30 H 0.02 0.88 7.62 -2.39 -0.02 0.86 16 31 H 0.09 2.93 6.19 -2.38 -0.01 2.92 16 32 H -0.02 -0.83 7.51 -2.39 -0.02 -0.85 16 33 H -0.02 -1.00 7.11 -2.39 -0.02 -1.02 16 34 H 0.27 16.13 6.33 -92.71 -0.59 15.54 16 35 H 0.03 0.93 8.05 -2.39 -0.02 0.91 16 36 H 0.04 1.69 7.54 -2.39 -0.02 1.67 16 37 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.06 2.72 7.85 -2.39 -0.02 2.71 16 39 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -65.05 343.12 3.22 -61.83 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 1.04 Total: 12.46 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 5.01 Total: -15.94 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -2.31 Total: -80.97 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -2.58 Total: -30.84 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.05 Total: 53.46 kcal Total: -65.05 3.22 -61.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611518761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.395 kcal (2) G-P(sol) polarization free energy of solvation -65.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds