Wall clock time and date at job start Mon Mar 30 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99621 * 2 1 4 4 C 1.53003 * 109.46754 * 174.99254 * 3 2 1 5 5 N 1.46890 * 109.46965 * 68.13168 * 4 3 2 6 6 C 1.46896 * 111.00218 * 293.83011 * 5 4 3 7 7 C 1.50701 * 109.47059 * 296.24540 * 6 5 4 8 8 H 1.07992 * 119.99893 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00189 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99594 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00210 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47171 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47230 * 119.99478 * 11 9 7 14 14 H 1.48505 * 109.46858 * 239.99821 * 11 9 7 15 15 C 1.46903 * 111.00211 * 57.78398 * 5 4 3 16 16 C 1.53001 * 109.47288 * 70.62580 * 15 5 4 17 17 C 1.52994 * 109.47555 * 184.71846 * 16 15 5 18 18 H 1.09004 * 109.47925 * 304.74035 * 17 16 15 19 19 C 1.53089 * 109.48453 * 184.71306 * 17 16 15 20 20 C 1.53176 * 109.16714 * 182.41022 * 19 17 16 21 21 C 1.53183 * 109.03280 * 56.97619 * 20 19 17 22 22 C 1.53084 * 109.16867 * 303.02154 * 21 20 19 23 23 O 1.42902 * 109.41432 * 57.60762 * 22 21 20 24 24 H 1.09008 * 109.46606 * 184.96709 * 1 2 3 25 25 H 1.08997 * 109.47083 * 304.96510 * 1 2 3 26 26 H 1.08998 * 109.47146 * 64.97167 * 1 2 3 27 27 H 1.08999 * 109.47880 * 294.99785 * 3 2 1 28 28 H 1.09007 * 109.46986 * 55.00117 * 3 2 1 29 29 H 1.09001 * 109.46818 * 188.12813 * 4 3 2 30 30 H 1.08995 * 109.47102 * 308.12706 * 4 3 2 31 31 H 1.09006 * 109.46918 * 56.24127 * 6 5 4 32 32 H 1.08995 * 109.47445 * 176.24017 * 6 5 4 33 33 H 0.97008 * 119.99777 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.47168 * 190.62602 * 15 5 4 35 35 H 1.09000 * 109.47193 * 310.62722 * 15 5 4 36 36 H 1.09006 * 109.47037 * 304.72524 * 16 15 5 37 37 H 1.09004 * 109.46717 * 64.71765 * 16 15 5 38 38 H 1.09007 * 109.52107 * 302.31501 * 19 17 16 39 39 H 1.09003 * 109.52386 * 62.43928 * 19 17 16 40 40 H 1.08989 * 109.54512 * 176.84375 * 20 19 17 41 41 H 1.08997 * 109.54026 * 297.02891 * 20 19 17 42 42 H 1.08996 * 109.52276 * 62.93366 * 21 20 19 43 43 H 1.09004 * 109.51580 * 183.04973 * 21 20 19 44 44 H 1.08993 * 109.48615 * 177.59208 * 22 21 20 45 45 H 1.09004 * 109.47909 * 297.61957 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5304 1.1869 0.1259 5 7 4.0780 0.5894 -1.0991 6 6 3.6329 -0.8023 -1.2506 7 6 4.1779 -1.6304 -0.1156 8 1 4.7937 -1.1691 0.6422 9 6 3.8904 -2.9770 -0.0446 10 7 3.1400 -3.5387 -0.9671 11 14 4.5666 -4.0036 1.3619 12 1 5.3761 -3.1410 2.2597 13 1 3.4409 -4.5969 2.1274 14 1 5.4208 -5.0890 0.8163 15 6 3.7209 1.3877 -2.2795 16 6 4.4982 2.7054 -2.2582 17 6 4.0404 3.5864 -3.4222 18 1 4.1482 3.0376 -4.3578 19 6 4.8983 4.8534 -3.4718 20 6 4.3953 5.7575 -4.6013 21 6 2.9131 6.0677 -4.3703 22 6 2.1318 4.7539 -4.2861 23 8 2.6703 3.9475 -3.2364 24 1 -0.3633 -1.0239 0.0890 25 1 -0.3633 0.5889 0.8422 26 1 -0.3633 0.4348 -0.9311 27 1 1.7613 1.8141 -0.9313 28 1 1.6194 1.8771 0.8419 29 1 3.9613 2.1776 0.2710 30 1 3.7761 0.5553 0.9796 31 1 2.5435 -0.8389 -1.2366 32 1 3.9975 -1.1994 -2.1979 33 1 2.9374 -4.4860 -0.9170 34 1 3.9718 0.8324 -3.1832 35 1 2.6512 1.5967 -2.2667 36 1 4.3122 3.2218 -1.3165 37 1 5.5643 2.4999 -2.3555 38 1 4.8229 5.3818 -2.5213 39 1 5.9379 4.5824 -3.6564 40 1 4.9657 6.6863 -4.6063 41 1 4.5180 5.2489 -5.5574 42 1 2.7976 6.6206 -3.4381 43 1 2.5330 6.6663 -5.1982 44 1 1.0832 4.9671 -4.0792 45 1 2.2144 4.2206 -5.2332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612446290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:02 Heat of formation + Delta-G solvation = -93.905526 kcal Electronic energy + Delta-G solvation = -22319.711331 eV Core-core repulsion = 19144.312645 eV Total energy + Delta-G solvation = -3175.398686 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.49800 -38.02852 -35.80956 -33.68048 -33.10370 -32.10614 -29.25834 -28.61114 -26.26201 -25.55666 -24.50621 -23.27154 -22.59520 -21.09170 -20.33053 -19.05633 -16.51329 -16.19174 -16.10396 -15.80280 -15.68669 -14.76817 -14.70831 -14.43873 -14.20515 -13.83531 -13.71361 -13.57167 -12.77139 -12.56830 -12.24692 -12.08225 -11.75255 -11.67291 -11.35123 -11.23182 -11.11429 -10.96041 -10.85248 -10.77203 -10.57958 -10.54974 -10.29939 -10.15647 -9.95847 -9.61201 -9.38039 -8.90847 -8.78717 -8.17443 -6.89537 -5.78852 -3.75336 3.43338 3.50003 3.54810 3.82697 4.51053 4.59088 4.64840 4.66937 4.74642 4.87191 5.12614 5.16538 5.35945 5.41164 5.52005 5.58005 5.62256 5.69062 5.70078 5.73623 5.74362 5.80575 5.87993 5.92005 5.95091 6.00316 6.03499 6.12508 6.18098 6.22762 6.28414 6.40611 6.60253 6.70138 6.94846 7.31370 7.51594 7.88488 7.99965 8.03385 8.31574 8.48406 8.82214 9.30077 9.84711 11.32847 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.026371 B = 0.004403 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.527824 B = 6357.168646 C = 6887.562183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.342 6.342 3 C 0.021 3.979 4 C 0.064 3.936 5 N -0.534 5.534 6 C 0.179 3.821 7 C -0.486 4.486 8 H 0.057 0.943 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.889 3.111 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.288 1.288 15 C 0.050 3.950 16 C -0.105 4.105 17 C 0.091 3.909 18 H 0.056 0.944 19 C -0.149 4.149 20 C -0.123 4.123 21 C -0.156 4.156 22 C 0.060 3.940 23 O -0.375 6.375 24 H 0.080 0.920 25 H 0.027 0.973 26 H 0.028 0.972 27 H 0.048 0.952 28 H 0.033 0.967 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.017 0.983 33 H 0.255 0.745 34 H 0.061 0.939 35 H 0.038 0.962 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.929 18.283 -5.667 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.260 6.260 3 C -0.057 4.057 4 C -0.065 4.065 5 N -0.257 5.257 6 C 0.055 3.945 7 C -0.525 4.525 8 H 0.075 0.925 9 C -0.144 4.144 10 N -0.541 5.541 11 Si 0.718 3.282 12 H -0.199 1.199 13 H -0.214 1.214 14 H -0.214 1.214 15 C -0.078 4.078 16 C -0.143 4.143 17 C 0.033 3.967 18 H 0.074 0.926 19 C -0.187 4.187 20 C -0.160 4.160 21 C -0.193 4.193 22 C -0.017 4.017 23 O -0.294 6.294 24 H 0.098 0.902 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.462 17.857 -5.514 18.746 hybrid contribution -0.698 -0.247 0.358 0.823 sum -2.161 17.611 -5.155 18.477 Atomic orbital electron populations 1.22674 0.84003 1.01986 0.98320 1.88503 1.17157 1.25832 1.94551 1.23376 0.97410 0.85865 0.99090 1.22176 0.88873 0.99091 0.96347 1.62299 1.58647 1.04837 0.99948 1.20089 0.96740 0.80972 0.96724 1.21107 1.29557 0.92907 1.08895 0.92516 1.24874 0.95649 0.97859 0.96058 1.69981 1.38597 1.11254 1.34265 0.86581 0.78539 0.80322 0.82722 1.19932 1.21415 1.21417 1.22059 0.97569 0.93178 0.95019 1.21634 1.00501 0.95247 0.96929 1.22178 0.81389 0.93900 0.99230 0.92597 1.22209 1.00051 0.97059 0.99400 1.21588 0.95822 0.99829 0.98781 1.22186 0.96164 0.98550 1.02449 1.22507 0.97553 0.90457 0.91186 1.87988 1.25937 1.69853 1.45580 0.90176 0.95408 0.95324 0.93400 0.94890 0.91628 0.89254 0.94410 0.96488 0.93528 0.92080 0.94369 0.91448 0.90175 0.91127 0.90845 0.91763 0.91942 0.91202 0.91290 0.89265 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.34 -7.61 7.45 -35.23 -0.26 -7.88 16 3 C 0.02 0.40 5.78 37.16 0.21 0.62 16 4 C 0.06 1.28 5.51 -3.83 -0.02 1.26 16 5 N -0.53 -11.80 4.69 -236.08 -1.11 -12.91 16 6 C 0.18 4.82 4.25 -4.98 -0.02 4.80 16 7 C -0.49 -14.07 8.41 -34.44 -0.29 -14.36 16 8 H 0.06 1.64 6.98 -52.49 -0.37 1.27 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 11 Si 0.89 22.52 29.54 -169.99 -5.02 17.50 16 12 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 C 0.05 0.94 4.72 -3.82 -0.02 0.92 16 16 C -0.11 -1.57 5.03 -26.73 -0.13 -1.70 16 17 C 0.09 1.17 2.65 -26.69 -0.07 1.10 16 18 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 19 C -0.15 -1.55 5.42 -26.59 -0.14 -1.70 16 20 C -0.12 -1.09 6.03 -26.55 -0.16 -1.25 16 21 C -0.16 -1.37 6.14 -26.59 -0.16 -1.53 16 22 C 0.06 0.63 6.84 37.20 0.25 0.88 16 23 O -0.37 -5.18 9.85 -35.23 -0.35 -5.52 16 24 H 0.08 1.41 8.14 -51.92 -0.42 0.99 16 25 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.90 5.75 -51.93 -0.30 0.60 16 28 H 0.03 0.55 8.12 -51.92 -0.42 0.13 16 29 H 0.07 1.12 6.64 -51.93 -0.35 0.78 16 30 H 0.09 1.99 6.55 -51.93 -0.34 1.65 16 31 H 0.04 1.09 5.03 -51.93 -0.26 0.83 16 32 H 0.02 0.50 7.93 -51.93 -0.41 0.09 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.06 1.18 7.87 -51.93 -0.41 0.77 16 35 H 0.04 0.75 5.13 -51.93 -0.27 0.48 16 36 H 0.07 1.01 6.58 -51.93 -0.34 0.67 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.50 8.14 -51.94 -0.42 0.07 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -32.03 344.08 -8.44 -40.47 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -8.09 Total: -2.09 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 0.46 Total: -7.84 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: -0.37 Total: -39.82 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.61 Total: -13.40 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.03 -8.44 -40.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612446290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.435 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds