Wall clock time and date at job start Mon Mar 30 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99621 * 2 1 4 4 C 1.53003 * 109.46754 * 174.99254 * 3 2 1 5 5 N 1.46890 * 109.46965 * 68.13168 * 4 3 2 6 6 C 1.46896 * 111.00218 * 293.83011 * 5 4 3 7 7 C 1.50701 * 109.47059 * 296.24540 * 6 5 4 8 8 H 1.07992 * 119.99893 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00189 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99594 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00210 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47171 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47230 * 119.99478 * 11 9 7 14 14 H 1.48505 * 109.46858 * 239.99821 * 11 9 7 15 15 C 1.46903 * 111.00211 * 57.78398 * 5 4 3 16 16 C 1.53001 * 109.47288 * 70.62580 * 15 5 4 17 17 C 1.52994 * 109.47555 * 184.71846 * 16 15 5 18 18 H 1.09004 * 109.47925 * 304.74035 * 17 16 15 19 19 C 1.53089 * 109.48453 * 184.71306 * 17 16 15 20 20 C 1.53176 * 109.16714 * 182.41022 * 19 17 16 21 21 C 1.53183 * 109.03280 * 56.97619 * 20 19 17 22 22 C 1.53084 * 109.16867 * 303.02154 * 21 20 19 23 23 O 1.42902 * 109.41432 * 57.60762 * 22 21 20 24 24 H 1.09008 * 109.46606 * 184.96709 * 1 2 3 25 25 H 1.08997 * 109.47083 * 304.96510 * 1 2 3 26 26 H 1.08998 * 109.47146 * 64.97167 * 1 2 3 27 27 H 1.08999 * 109.47880 * 294.99785 * 3 2 1 28 28 H 1.09007 * 109.46986 * 55.00117 * 3 2 1 29 29 H 1.09001 * 109.46818 * 188.12813 * 4 3 2 30 30 H 1.08995 * 109.47102 * 308.12706 * 4 3 2 31 31 H 1.09006 * 109.46918 * 56.24127 * 6 5 4 32 32 H 1.08995 * 109.47445 * 176.24017 * 6 5 4 33 33 H 0.97008 * 119.99777 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.47168 * 190.62602 * 15 5 4 35 35 H 1.09000 * 109.47193 * 310.62722 * 15 5 4 36 36 H 1.09006 * 109.47037 * 304.72524 * 16 15 5 37 37 H 1.09004 * 109.46717 * 64.71765 * 16 15 5 38 38 H 1.09007 * 109.52107 * 302.31501 * 19 17 16 39 39 H 1.09003 * 109.52386 * 62.43928 * 19 17 16 40 40 H 1.08989 * 109.54512 * 176.84375 * 20 19 17 41 41 H 1.08997 * 109.54026 * 297.02891 * 20 19 17 42 42 H 1.08996 * 109.52276 * 62.93366 * 21 20 19 43 43 H 1.09004 * 109.51580 * 183.04973 * 21 20 19 44 44 H 1.08993 * 109.48615 * 177.59208 * 22 21 20 45 45 H 1.09004 * 109.47909 * 297.61957 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5304 1.1869 0.1259 5 7 4.0780 0.5894 -1.0991 6 6 3.6329 -0.8023 -1.2506 7 6 4.1779 -1.6304 -0.1156 8 1 4.7937 -1.1691 0.6422 9 6 3.8904 -2.9770 -0.0446 10 7 3.1400 -3.5387 -0.9671 11 14 4.5666 -4.0036 1.3619 12 1 5.3761 -3.1410 2.2597 13 1 3.4409 -4.5969 2.1274 14 1 5.4208 -5.0890 0.8163 15 6 3.7209 1.3877 -2.2795 16 6 4.4982 2.7054 -2.2582 17 6 4.0404 3.5864 -3.4222 18 1 4.1482 3.0376 -4.3578 19 6 4.8983 4.8534 -3.4718 20 6 4.3953 5.7575 -4.6013 21 6 2.9131 6.0677 -4.3703 22 6 2.1318 4.7539 -4.2861 23 8 2.6703 3.9475 -3.2364 24 1 -0.3633 -1.0239 0.0890 25 1 -0.3633 0.5889 0.8422 26 1 -0.3633 0.4348 -0.9311 27 1 1.7613 1.8141 -0.9313 28 1 1.6194 1.8771 0.8419 29 1 3.9613 2.1776 0.2710 30 1 3.7761 0.5553 0.9796 31 1 2.5435 -0.8389 -1.2366 32 1 3.9975 -1.1994 -2.1979 33 1 2.9374 -4.4860 -0.9170 34 1 3.9718 0.8324 -3.1832 35 1 2.6512 1.5967 -2.2667 36 1 4.3122 3.2218 -1.3165 37 1 5.5643 2.4999 -2.3555 38 1 4.8229 5.3818 -2.5213 39 1 5.9379 4.5824 -3.6564 40 1 4.9657 6.6863 -4.6063 41 1 4.5180 5.2489 -5.5574 42 1 2.7976 6.6206 -3.4381 43 1 2.5330 6.6663 -5.1982 44 1 1.0832 4.9671 -4.0792 45 1 2.2144 4.2206 -5.2332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612446290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:01 Heat of formation + Delta-G solvation = -115.451773 kcal Electronic energy + Delta-G solvation = -22320.645646 eV Core-core repulsion = 19144.312645 eV Total energy + Delta-G solvation = -3176.333001 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.49509 -39.58835 -37.42179 -34.84526 -34.49345 -33.73089 -30.63054 -30.25943 -27.92015 -27.06674 -25.66730 -24.49330 -24.26209 -22.51530 -21.19177 -20.62572 -18.34784 -17.72564 -17.49217 -17.08282 -16.95563 -16.51869 -15.87414 -15.71305 -15.51073 -15.23849 -15.11389 -14.71120 -14.19655 -13.79685 -13.59641 -13.46127 -13.31113 -13.11915 -12.87680 -12.72363 -12.57291 -12.38948 -12.36139 -12.07568 -12.05571 -11.86037 -11.79871 -11.51710 -11.41201 -11.18466 -10.97012 -10.56705 -10.28803 -10.22127 -8.71017 -8.04093 -6.08530 1.42909 1.43267 1.56112 2.49010 2.90775 3.04791 3.30038 3.41053 3.89112 3.94052 3.99441 4.05975 4.18247 4.23234 4.33492 4.35606 4.43854 4.49535 4.54110 4.56659 4.59749 4.63935 4.74302 4.76349 4.84013 4.90726 4.93117 4.99170 5.07415 5.13012 5.14387 5.21792 5.25717 5.38871 5.43965 5.48476 5.74414 5.83565 6.24895 6.38856 6.47242 6.51625 6.83011 7.06855 7.56461 9.07700 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.026371 B = 0.004403 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.527824 B = 6357.168646 C = 6887.562183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.388 6.388 3 C 0.025 3.975 4 C 0.065 3.935 5 N -0.542 5.542 6 C 0.195 3.805 7 C -0.497 4.497 8 H 0.054 0.946 9 C 0.002 3.998 10 N -0.936 5.936 11 Si 0.959 3.041 12 H -0.265 1.265 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.056 3.944 16 C -0.094 4.094 17 C 0.093 3.907 18 H 0.052 0.948 19 C -0.145 4.145 20 C -0.122 4.122 21 C -0.151 4.151 22 C 0.052 3.948 23 O -0.400 6.400 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.021 0.979 32 H -0.021 1.021 33 H 0.257 0.743 34 H 0.044 0.956 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.602 20.254 -5.101 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.307 6.307 3 C -0.052 4.052 4 C -0.064 4.064 5 N -0.265 5.265 6 C 0.069 3.931 7 C -0.535 4.535 8 H 0.072 0.928 9 C -0.195 4.195 10 N -0.577 5.577 11 Si 0.785 3.215 12 H -0.190 1.190 13 H -0.209 1.209 14 H -0.208 1.208 15 C -0.072 4.072 16 C -0.132 4.132 17 C 0.035 3.965 18 H 0.070 0.930 19 C -0.183 4.183 20 C -0.160 4.160 21 C -0.189 4.189 22 C -0.025 4.025 23 O -0.320 6.320 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.038 0.962 32 H -0.003 1.003 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.135 19.860 -4.949 20.499 hybrid contribution -0.861 -0.818 0.144 1.197 sum -1.996 19.042 -4.805 19.740 Atomic orbital electron populations 1.22786 0.81990 1.02272 1.00080 1.88407 1.19585 1.27818 1.94872 1.23362 0.96483 0.85077 1.00308 1.22205 0.90089 0.99900 0.94191 1.62195 1.59056 1.03197 1.02027 1.19703 0.95377 0.83737 0.94259 1.21372 1.29377 0.93558 1.09223 0.92818 1.25731 0.95921 0.99171 0.98673 1.70116 1.39835 1.11642 1.36157 0.85496 0.77985 0.78554 0.79492 1.18964 1.20896 1.20769 1.22058 0.97818 0.94348 0.92990 1.21523 1.00106 0.93268 0.98271 1.22105 0.81837 0.94775 0.97777 0.93031 1.22160 1.00003 0.95958 1.00150 1.21611 0.96001 1.00188 0.98157 1.22155 0.95912 0.97615 1.03171 1.22725 0.98285 0.91018 0.90458 1.87936 1.26311 1.70740 1.47016 0.90938 0.92583 0.94276 0.93187 0.92062 0.88251 0.91772 0.96194 1.00261 0.93395 0.93704 0.95082 0.91080 0.89722 0.91216 0.89951 0.90130 0.91633 0.91421 0.89293 0.88377 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 11.01 113.37 1.25 2.13 16 2 O -0.39 -17.37 7.45 -148.98 -1.11 -18.48 16 3 C 0.03 0.95 5.78 71.98 0.42 1.36 16 4 C 0.06 2.55 5.51 86.31 0.48 3.03 16 5 N -0.54 -24.34 4.69 -900.82 -4.22 -28.56 16 6 C 0.19 10.90 4.25 85.56 0.36 11.27 16 7 C -0.50 -29.42 8.41 25.60 0.22 -29.21 16 8 H 0.05 3.14 6.98 -2.91 -0.02 3.12 16 9 C 0.00 0.10 5.46 84.65 0.46 0.56 16 10 N -0.94 -58.86 13.29 21.45 0.28 -58.58 16 11 Si 0.96 46.65 29.54 68.60 2.03 48.67 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 14 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 15 C 0.06 2.13 4.72 86.30 0.41 2.53 16 16 C -0.09 -2.72 5.03 30.59 0.15 -2.56 16 17 C 0.09 2.28 2.65 30.62 0.08 2.36 16 18 H 0.05 1.29 8.14 -2.38 -0.02 1.28 16 19 C -0.14 -2.70 5.42 30.68 0.17 -2.54 16 20 C -0.12 -1.84 6.03 30.71 0.19 -1.65 16 21 C -0.15 -2.27 6.14 30.68 0.19 -2.08 16 22 C 0.05 1.00 6.84 72.01 0.49 1.49 16 23 O -0.40 -10.61 9.85 -148.98 -1.47 -12.08 16 24 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 25 H 0.06 1.61 8.12 -2.39 -0.02 1.59 16 26 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 1.84 5.75 -2.39 -0.01 1.83 16 28 H 0.06 1.92 8.12 -2.38 -0.02 1.90 16 29 H 0.10 3.22 6.64 -2.39 -0.02 3.20 16 30 H 0.06 2.86 6.55 -2.39 -0.02 2.85 16 31 H 0.02 1.23 5.03 -2.38 -0.01 1.22 16 32 H -0.02 -1.28 7.93 -2.39 -0.02 -1.30 16 33 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 34 H 0.04 1.81 7.87 -2.39 -0.02 1.79 16 35 H 0.03 1.23 5.13 -2.39 -0.01 1.22 16 36 H 0.07 2.00 6.58 -2.38 -0.02 1.98 16 37 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 38 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -70.29 344.08 1.30 -68.99 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.94 Total: 13.33 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 4.86 Total: -13.30 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -3.94 Total: -87.13 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -2.58 Total: -30.56 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -70.29 1.30 -68.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612446290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.460 kcal (2) G-P(sol) polarization free energy of solvation -70.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds