Wall clock time and date at job start Mon Mar 30 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00255 * 2 1 4 4 C 1.52994 * 109.47219 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47439 * 67.15248 * 4 3 2 6 6 C 1.46901 * 111.00081 * 289.75823 * 5 4 3 7 7 C 1.50699 * 109.47194 * 300.01568 * 6 5 4 8 8 H 1.08008 * 119.99836 * 354.96368 * 7 6 5 9 9 C 1.37878 * 120.00334 * 174.96475 * 7 6 5 10 10 N 1.31511 * 120.00018 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99699 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47429 * 90.00221 * 11 9 7 13 13 H 1.48503 * 109.47008 * 209.99854 * 11 9 7 14 14 H 1.48502 * 109.47312 * 329.99843 * 11 9 7 15 15 C 1.46902 * 110.99743 * 53.70586 * 5 4 3 16 16 C 1.52998 * 109.47184 * 179.97438 * 15 5 4 17 17 C 1.53003 * 109.47268 * 180.02562 * 16 15 5 18 18 C 1.53001 * 109.46901 * 60.00683 * 17 16 15 19 19 O 1.42898 * 109.47602 * 59.99680 * 18 17 16 20 20 C 1.42893 * 113.99740 * 90.00017 * 19 18 17 21 21 C 1.53004 * 109.46893 * 299.99638 * 18 17 16 22 22 C 1.52998 * 109.47039 * 60.00451 * 15 5 4 23 23 H 1.08995 * 109.46915 * 300.00537 * 1 2 3 24 24 H 1.09006 * 109.47095 * 59.99635 * 1 2 3 25 25 H 1.08999 * 109.47335 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47285 * 59.99934 * 3 2 1 27 27 H 1.09007 * 109.46664 * 299.99862 * 3 2 1 28 28 H 1.08999 * 109.47479 * 307.15816 * 4 3 2 29 29 H 1.08999 * 109.47635 * 187.15071 * 4 3 2 30 30 H 1.08998 * 109.47069 * 60.01250 * 6 5 4 31 31 H 1.08999 * 109.47408 * 180.02562 * 6 5 4 32 32 H 0.96996 * 120.00331 * 180.02562 * 10 9 7 33 33 H 1.08996 * 109.47446 * 300.00304 * 15 5 4 34 34 H 1.08997 * 109.47593 * 300.00125 * 16 15 5 35 35 H 1.09000 * 109.46924 * 60.00618 * 16 15 5 36 36 H 1.09001 * 109.46881 * 180.02562 * 17 16 15 37 37 H 1.08996 * 109.47304 * 300.00276 * 17 16 15 38 38 H 1.09003 * 109.47176 * 180.02562 * 18 17 16 39 39 H 1.08998 * 109.47629 * 300.00385 * 20 19 18 40 40 H 1.08996 * 109.47546 * 60.00510 * 20 19 18 41 41 H 1.09000 * 109.47094 * 180.02562 * 20 19 18 42 42 H 1.09007 * 109.47491 * 300.00614 * 21 18 17 43 43 H 1.08996 * 109.47434 * 180.02562 * 21 18 17 44 44 H 1.08999 * 109.47234 * 299.99944 * 22 15 5 45 45 H 1.09006 * 109.47122 * 59.99621 * 22 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9807 0.6101 -1.2772 6 6 3.6060 -0.8069 -1.3760 7 6 4.2475 -1.5759 -0.2499 8 1 4.9354 -1.0803 0.4192 9 6 3.9562 -2.9120 -0.0737 10 7 4.5164 -3.5831 0.9088 11 14 2.7669 -3.7691 -1.2313 12 1 3.5174 -4.3396 -2.3788 13 1 2.0689 -4.8602 -0.5050 14 1 1.7690 -2.7892 -1.7305 15 6 3.4491 1.3755 -2.4128 16 6 3.9337 0.7489 -3.7218 17 6 3.3806 1.5464 -4.9046 18 6 3.8724 2.9927 -4.8189 19 8 5.3007 3.0133 -4.8567 20 6 5.8458 3.1110 -6.1740 21 6 3.3878 3.6195 -3.5099 22 6 3.9408 2.8218 -2.3278 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6887 1.8464 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 3.8490 0.5370 0.8181 29 1 3.9783 2.1723 0.1273 30 1 2.5222 -0.9016 -1.3094 31 1 3.9479 -1.2075 -2.3303 32 1 4.3118 -4.5231 1.0326 33 1 2.3597 1.3598 -2.3835 34 1 5.0232 0.7650 -3.7509 35 1 3.5837 -0.2816 -3.7827 36 1 3.7255 1.0997 -5.8371 37 1 2.2911 1.5308 -4.8757 38 1 3.4780 3.5611 -5.6613 39 1 5.5206 2.2556 -6.7662 40 1 5.4984 4.0311 -6.6438 41 1 6.9343 3.1203 -6.1170 42 1 2.2982 3.6038 -3.4810 43 1 3.7377 4.6499 -3.4490 44 1 3.5960 3.2686 -1.3953 45 1 5.0303 2.8375 -2.3571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686362667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:38 Heat of formation + Delta-G solvation = -82.670115 kcal Electronic energy + Delta-G solvation = -23087.180441 eV Core-core repulsion = 19912.268959 eV Total energy + Delta-G solvation = -3174.911482 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.62072 -38.04158 -36.41301 -34.33921 -32.24756 -30.87322 -29.35244 -28.81844 -26.63836 -26.25509 -25.28761 -23.03451 -22.21992 -21.35472 -19.90706 -18.76510 -16.90033 -16.34935 -15.99261 -15.92386 -15.39229 -15.28688 -14.68980 -14.43734 -14.09883 -13.73753 -13.49087 -13.13584 -12.93134 -12.49032 -12.22799 -12.09301 -12.01880 -11.92579 -11.61306 -11.37005 -11.23182 -11.03538 -10.81870 -10.73676 -10.55824 -10.29883 -10.09388 -9.95357 -9.83464 -9.60515 -9.24126 -9.01062 -8.96511 -8.32938 -7.05554 -5.84725 -3.77213 3.41435 3.47803 3.53895 3.81862 4.33562 4.61714 4.76559 4.84882 4.94077 5.09786 5.26358 5.30497 5.42489 5.50002 5.51671 5.52461 5.60555 5.63019 5.67217 5.69275 5.72206 5.77176 5.79314 5.90876 5.92534 6.00907 6.05997 6.13735 6.17232 6.35503 6.51533 6.55974 6.70274 6.80919 6.95567 7.18160 7.27008 7.50622 7.75296 7.84907 8.13639 8.29527 8.88873 9.22826 9.79960 11.29226 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.018986 B = 0.006294 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.379528 B = 4447.608835 C = 5062.302121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.024 3.976 4 C 0.060 3.940 5 N -0.517 5.517 6 C 0.147 3.853 7 C -0.488 4.488 8 H 0.076 0.924 9 C 0.068 3.932 10 N -0.910 5.910 11 Si 0.871 3.129 12 H -0.282 1.282 13 H -0.291 1.291 14 H -0.264 1.264 15 C 0.083 3.917 16 C -0.108 4.108 17 C -0.139 4.139 18 C 0.091 3.909 19 O -0.373 6.373 20 C 0.031 3.969 21 C -0.113 4.113 22 C -0.108 4.108 23 H 0.032 0.968 24 H 0.029 0.971 25 H 0.079 0.921 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.028 0.972 31 H 0.018 0.982 32 H 0.259 0.741 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.038 0.962 40 H 0.035 0.965 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.547 14.965 -10.974 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.269 6.269 3 C -0.054 4.054 4 C -0.068 4.068 5 N -0.240 5.240 6 C 0.021 3.979 7 C -0.527 4.527 8 H 0.094 0.906 9 C -0.131 4.131 10 N -0.551 5.551 11 Si 0.699 3.301 12 H -0.208 1.208 13 H -0.217 1.217 14 H -0.188 1.188 15 C -0.026 4.026 16 C -0.145 4.145 17 C -0.177 4.177 18 C 0.033 3.967 19 O -0.292 6.292 20 C -0.066 4.066 21 C -0.151 4.151 22 C -0.146 4.146 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.793 14.622 -10.744 18.767 hybrid contribution -1.980 -0.438 -0.861 2.203 sum -6.773 14.184 -11.605 19.538 Atomic orbital electron populations 1.22692 0.83746 1.02084 0.98631 1.88397 1.17328 1.26474 1.94660 1.23391 0.97748 0.85560 0.98734 1.22263 0.89080 1.00034 0.95463 1.62146 1.58115 1.04240 0.99503 1.20506 0.96400 0.83746 0.97202 1.20989 1.25334 0.94106 1.12248 0.90640 1.24799 0.95833 0.97339 0.95168 1.69901 1.44689 1.09072 1.31402 0.86913 0.82419 0.79384 0.81360 1.20809 1.21736 1.18837 1.21581 0.95893 0.93092 0.92021 1.21512 1.02241 0.98469 0.92321 1.22030 1.00470 0.95872 0.99360 1.22111 0.81301 0.95623 0.97650 1.87991 1.19946 1.94611 1.26660 1.22739 0.99508 0.99243 0.85078 1.21612 0.99960 0.99202 0.94294 1.21513 1.02399 0.94344 0.96319 0.94897 0.95256 0.90272 0.94443 0.94064 0.88153 0.91061 0.95488 0.96413 0.93126 0.95265 0.90435 0.91754 0.92160 0.91649 0.92927 0.94322 0.94631 0.89860 0.91343 0.91658 0.92467 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.35 -7.23 7.60 -35.23 -0.27 -7.50 16 3 C 0.02 0.42 5.67 37.15 0.21 0.63 16 4 C 0.06 1.17 5.20 -3.83 -0.02 1.15 16 5 N -0.52 -10.94 4.62 -228.09 -1.05 -11.99 16 6 C 0.15 3.65 3.02 -4.98 -0.02 3.64 16 7 C -0.49 -14.20 8.76 -34.44 -0.30 -14.50 16 8 H 0.08 2.39 7.21 -52.48 -0.38 2.01 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.91 -28.83 13.96 55.43 0.77 -28.05 16 11 Si 0.87 22.56 27.57 -169.99 -4.69 17.87 16 12 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 14 H -0.26 -6.60 6.40 56.52 0.36 -6.24 16 15 C 0.08 1.44 1.40 -67.71 -0.10 1.34 16 16 C -0.11 -1.82 4.71 -26.73 -0.13 -1.95 16 17 C -0.14 -1.83 5.63 -26.73 -0.15 -1.98 16 18 C 0.09 1.09 2.91 -26.73 -0.08 1.01 16 19 O -0.37 -4.99 9.00 -35.23 -0.32 -5.31 16 20 C 0.03 0.31 10.82 101.05 1.09 1.40 16 21 C -0.11 -1.34 5.66 -26.75 -0.15 -1.49 16 22 C -0.11 -1.58 4.79 -26.76 -0.13 -1.71 16 23 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.67 5.89 -51.93 -0.31 0.36 16 28 H 0.10 2.28 6.30 -51.93 -0.33 1.96 16 29 H 0.07 1.19 6.66 -51.93 -0.35 0.84 16 30 H 0.03 0.70 4.02 -51.93 -0.21 0.49 16 31 H 0.02 0.46 5.69 -51.93 -0.30 0.16 16 32 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 33 H 0.03 0.52 6.05 -51.93 -0.31 0.21 16 34 H 0.08 1.43 7.68 -51.93 -0.40 1.03 16 35 H 0.06 1.20 6.26 -51.93 -0.33 0.87 16 36 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.53 7.79 -51.93 -0.40 0.13 16 39 H 0.04 0.36 7.87 -51.93 -0.41 -0.05 16 40 H 0.04 0.30 8.09 -51.93 -0.42 -0.12 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.79 6.54 -51.93 -0.34 0.45 16 45 H 0.08 1.30 7.68 -51.93 -0.40 0.90 16 LS Contribution 333.45 15.07 5.03 5.03 Total: -1.00 -32.67 333.45 -7.11 -39.78 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.84 Total: -0.84 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 1.25 Total: -8.98 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: -0.28 Total: -40.05 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.58 Total: -12.81 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.69 Total: 17.87 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.67 -7.11 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686362667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.890 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds