Wall clock time and date at job start Mon Mar 30 2020 06:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00255 * 2 1 4 4 C 1.52994 * 109.47219 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47439 * 67.15248 * 4 3 2 6 6 C 1.46901 * 111.00081 * 289.75823 * 5 4 3 7 7 C 1.50699 * 109.47194 * 300.01568 * 6 5 4 8 8 H 1.08008 * 119.99836 * 354.96368 * 7 6 5 9 9 C 1.37878 * 120.00334 * 174.96475 * 7 6 5 10 10 N 1.31511 * 120.00018 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99699 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47429 * 90.00221 * 11 9 7 13 13 H 1.48503 * 109.47008 * 209.99854 * 11 9 7 14 14 H 1.48502 * 109.47312 * 329.99843 * 11 9 7 15 15 C 1.46902 * 110.99743 * 53.70586 * 5 4 3 16 16 C 1.52998 * 109.47184 * 179.97438 * 15 5 4 17 17 C 1.53003 * 109.47268 * 180.02562 * 16 15 5 18 18 C 1.53001 * 109.46901 * 60.00683 * 17 16 15 19 19 O 1.42898 * 109.47602 * 59.99680 * 18 17 16 20 20 C 1.42893 * 113.99740 * 90.00017 * 19 18 17 21 21 C 1.53004 * 109.46893 * 299.99638 * 18 17 16 22 22 C 1.52998 * 109.47039 * 60.00451 * 15 5 4 23 23 H 1.08995 * 109.46915 * 300.00537 * 1 2 3 24 24 H 1.09006 * 109.47095 * 59.99635 * 1 2 3 25 25 H 1.08999 * 109.47335 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47285 * 59.99934 * 3 2 1 27 27 H 1.09007 * 109.46664 * 299.99862 * 3 2 1 28 28 H 1.08999 * 109.47479 * 307.15816 * 4 3 2 29 29 H 1.08999 * 109.47635 * 187.15071 * 4 3 2 30 30 H 1.08998 * 109.47069 * 60.01250 * 6 5 4 31 31 H 1.08999 * 109.47408 * 180.02562 * 6 5 4 32 32 H 0.96996 * 120.00331 * 180.02562 * 10 9 7 33 33 H 1.08996 * 109.47446 * 300.00304 * 15 5 4 34 34 H 1.08997 * 109.47593 * 300.00125 * 16 15 5 35 35 H 1.09000 * 109.46924 * 60.00618 * 16 15 5 36 36 H 1.09001 * 109.46881 * 180.02562 * 17 16 15 37 37 H 1.08996 * 109.47304 * 300.00276 * 17 16 15 38 38 H 1.09003 * 109.47176 * 180.02562 * 18 17 16 39 39 H 1.08998 * 109.47629 * 300.00385 * 20 19 18 40 40 H 1.08996 * 109.47546 * 60.00510 * 20 19 18 41 41 H 1.09000 * 109.47094 * 180.02562 * 20 19 18 42 42 H 1.09007 * 109.47491 * 300.00614 * 21 18 17 43 43 H 1.08996 * 109.47434 * 180.02562 * 21 18 17 44 44 H 1.08999 * 109.47234 * 299.99944 * 22 15 5 45 45 H 1.09006 * 109.47122 * 59.99621 * 22 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9807 0.6101 -1.2772 6 6 3.6060 -0.8069 -1.3760 7 6 4.2475 -1.5759 -0.2499 8 1 4.9354 -1.0803 0.4192 9 6 3.9562 -2.9120 -0.0737 10 7 4.5164 -3.5831 0.9088 11 14 2.7669 -3.7691 -1.2313 12 1 3.5174 -4.3396 -2.3788 13 1 2.0689 -4.8602 -0.5050 14 1 1.7690 -2.7892 -1.7305 15 6 3.4491 1.3755 -2.4128 16 6 3.9337 0.7489 -3.7218 17 6 3.3806 1.5464 -4.9046 18 6 3.8724 2.9927 -4.8189 19 8 5.3007 3.0133 -4.8567 20 6 5.8458 3.1110 -6.1740 21 6 3.3878 3.6195 -3.5099 22 6 3.9408 2.8218 -2.3278 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6887 1.8464 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 3.8490 0.5370 0.8181 29 1 3.9783 2.1723 0.1273 30 1 2.5222 -0.9016 -1.3094 31 1 3.9479 -1.2075 -2.3303 32 1 4.3118 -4.5231 1.0326 33 1 2.3597 1.3598 -2.3835 34 1 5.0232 0.7650 -3.7509 35 1 3.5837 -0.2816 -3.7827 36 1 3.7255 1.0997 -5.8371 37 1 2.2911 1.5308 -4.8757 38 1 3.4780 3.5611 -5.6613 39 1 5.5206 2.2556 -6.7662 40 1 5.4984 4.0311 -6.6438 41 1 6.9343 3.1203 -6.1170 42 1 2.2982 3.6038 -3.4810 43 1 3.7377 4.6499 -3.4490 44 1 3.5960 3.2686 -1.3953 45 1 5.0303 2.8375 -2.3571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686362667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:37 Heat of formation + Delta-G solvation = -106.359736 kcal Electronic energy + Delta-G solvation = -23088.207700 eV Core-core repulsion = 19912.268959 eV Total energy + Delta-G solvation = -3175.938741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.85390 -39.29629 -37.73157 -35.71515 -34.38623 -32.11782 -30.60408 -30.51781 -27.97052 -27.27250 -26.78351 -24.48627 -23.58421 -22.85684 -21.16913 -20.17975 -18.95640 -17.63825 -17.34283 -17.07372 -16.61391 -16.31401 -16.21619 -16.13329 -15.62453 -15.20961 -14.73875 -14.43010 -14.23584 -14.02335 -13.68714 -13.55459 -13.34025 -13.11855 -12.94059 -12.85284 -12.49206 -12.44928 -12.34556 -12.11409 -11.94723 -11.88554 -11.70516 -11.43236 -11.24855 -11.09441 -10.94850 -10.70013 -10.35119 -10.24210 -8.71395 -8.17460 -6.14299 1.33934 1.36082 1.48755 2.42442 2.95251 3.02196 3.19085 3.38417 3.81298 3.89162 4.07091 4.18985 4.29465 4.33071 4.40867 4.42802 4.49791 4.51808 4.55215 4.56903 4.63836 4.65975 4.68639 4.72071 4.80601 4.85144 4.89891 4.96508 5.03342 5.11989 5.16724 5.31132 5.34816 5.37124 5.44617 5.51157 5.65750 5.73319 6.13666 6.42458 6.44539 6.54883 6.84550 6.91479 7.46968 8.99970 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.018986 B = 0.006294 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.379528 B = 4447.608835 C = 5062.302121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.397 6.397 3 C 0.029 3.971 4 C 0.061 3.939 5 N -0.537 5.537 6 C 0.164 3.836 7 C -0.487 4.487 8 H 0.031 0.969 9 C 0.008 3.992 10 N -0.958 5.958 11 Si 0.939 3.061 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.248 1.248 15 C 0.085 3.915 16 C -0.106 4.106 17 C -0.133 4.133 18 C 0.089 3.911 19 O -0.402 6.402 20 C 0.025 3.975 21 C -0.108 4.108 22 C -0.101 4.101 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.028 0.972 31 H 0.010 0.990 32 H 0.261 0.739 33 H 0.035 0.965 34 H 0.053 0.947 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.844 17.103 -13.247 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.317 6.317 3 C -0.048 4.048 4 C -0.068 4.068 5 N -0.260 5.260 6 C 0.038 3.962 7 C -0.526 4.526 8 H 0.050 0.950 9 C -0.188 4.188 10 N -0.600 5.600 11 Si 0.764 3.236 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.172 1.172 15 C -0.023 4.023 16 C -0.144 4.144 17 C -0.171 4.171 18 C 0.032 3.968 19 O -0.321 6.321 20 C -0.071 4.071 21 C -0.146 4.146 22 C -0.139 4.139 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.045 0.955 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.095 16.793 -13.030 22.408 hybrid contribution -1.171 -1.040 -0.094 1.569 sum -8.266 15.753 -13.124 22.107 Atomic orbital electron populations 1.22861 0.81449 1.02582 1.00659 1.88293 1.20018 1.28309 1.95048 1.23353 0.95733 0.84984 1.00778 1.22195 0.91326 1.00044 0.93187 1.62043 1.59418 1.02926 1.01633 1.20156 0.95656 0.85805 0.94629 1.21231 1.24278 0.94517 1.12557 0.95031 1.25675 0.97907 0.98223 0.96962 1.70061 1.46773 1.09532 1.33671 0.85829 0.80293 0.78340 0.79158 1.19913 1.21220 1.17178 1.21679 0.96003 0.94163 0.90414 1.21454 1.00804 0.98006 0.94173 1.22009 1.01208 0.96302 0.97606 1.22211 0.80900 0.94904 0.98829 1.87968 1.20845 1.94741 1.28596 1.22897 0.99791 1.00398 0.83989 1.21634 1.01037 0.99331 0.92625 1.21430 1.01068 0.92849 0.98507 0.92869 0.93112 0.90673 0.92152 0.91908 0.92708 0.88347 0.95463 0.97167 0.93030 0.94716 0.92862 0.94129 0.91372 0.90121 0.89961 0.94005 0.92579 0.89577 0.89364 0.90052 0.91500 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 11.01 113.37 1.25 1.86 16 2 O -0.40 -15.94 7.60 -148.98 -1.13 -17.08 16 3 C 0.03 0.98 5.67 71.98 0.41 1.38 16 4 C 0.06 2.38 5.20 86.30 0.45 2.83 16 5 N -0.54 -22.98 4.62 -875.55 -4.04 -27.02 16 6 C 0.16 8.29 3.02 85.56 0.26 8.55 16 7 C -0.49 -29.62 8.76 25.60 0.22 -29.39 16 8 H 0.03 2.14 7.21 -2.91 -0.02 2.12 16 9 C 0.01 0.47 5.47 84.66 0.46 0.94 16 10 N -0.96 -63.00 13.96 21.45 0.30 -62.70 16 11 Si 0.94 47.30 27.57 68.60 1.89 49.19 16 12 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 13 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 14 H -0.25 -11.76 6.40 99.48 0.64 -11.12 16 15 C 0.09 2.85 1.40 44.91 0.06 2.91 16 16 C -0.11 -3.53 4.71 30.59 0.14 -3.39 16 17 C -0.13 -3.14 5.63 30.60 0.17 -2.96 16 18 C 0.09 1.83 2.91 30.60 0.09 1.92 16 19 O -0.40 -9.92 9.00 -148.98 -1.34 -11.26 16 20 C 0.03 0.45 10.82 113.37 1.23 1.68 16 21 C -0.11 -2.16 5.66 30.58 0.17 -1.99 16 22 C -0.10 -2.74 4.79 30.58 0.15 -2.59 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 1.82 5.89 -2.38 -0.01 1.80 16 28 H 0.05 2.63 6.30 -2.39 -0.02 2.62 16 29 H 0.10 3.22 6.66 -2.39 -0.02 3.20 16 30 H 0.03 1.42 4.02 -2.39 -0.01 1.41 16 31 H 0.01 0.54 5.69 -2.39 -0.01 0.53 16 32 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 33 H 0.04 1.14 6.05 -2.39 -0.01 1.13 16 34 H 0.05 1.99 7.68 -2.39 -0.02 1.97 16 35 H 0.04 1.50 6.26 -2.39 -0.01 1.49 16 36 H 0.07 1.49 7.87 -2.39 -0.02 1.47 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 1.25 7.79 -2.39 -0.02 1.24 16 39 H 0.04 0.70 7.87 -2.39 -0.02 0.68 16 40 H 0.06 0.75 8.09 -2.39 -0.02 0.73 16 41 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.07 1.66 6.54 -2.39 -0.02 1.65 16 45 H 0.06 1.80 7.68 -2.38 -0.02 1.78 16 Total: -1.00 -74.39 333.45 1.62 -72.77 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.88 Total: 14.35 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 5.06 Total: -18.25 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -3.74 Total: -89.72 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -2.47 Total: -28.34 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.89 Total: 49.19 kcal Total: -74.39 1.62 -72.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686362667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.590 kcal (2) G-P(sol) polarization free energy of solvation -74.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds