Wall clock time and date at job start Mon Mar 30 2020 05:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 110.67568 * 2 1 4 4 C 1.54992 * 110.61894 * 237.03650 * 2 1 3 5 5 C 1.54807 * 102.09437 * 204.47478 * 4 2 1 6 6 H 1.09001 * 110.49309 * 262.07160 * 5 4 2 7 7 C 1.53001 * 110.48939 * 139.55702 * 5 4 2 8 8 N 1.46898 * 109.47343 * 66.45523 * 7 5 4 9 9 C 1.46896 * 110.99955 * 66.04345 * 8 7 5 10 10 C 1.46903 * 111.00226 * 190.00258 * 8 7 5 11 11 C 1.52995 * 109.46906 * 75.88134 * 10 8 7 12 12 O 1.42904 * 109.47152 * 64.44933 * 11 10 8 13 13 C 1.42900 * 114.00228 * 179.97438 * 12 11 10 14 14 C 1.50692 * 109.47259 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00264 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99912 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00249 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00071 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46831 * 59.99940 * 18 16 14 20 20 H 1.48500 * 109.47207 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47007 * 299.99976 * 18 16 14 22 22 C 1.54101 * 104.18807 * 20.88189 * 5 4 2 23 23 H 1.08998 * 109.88298 * 121.45233 * 22 5 4 24 24 C 1.53000 * 109.87872 * 242.60585 * 22 5 4 25 25 O 1.43746 * 107.29151 * 2.02562 * 22 5 4 26 26 H 1.08998 * 109.47431 * 182.96549 * 1 2 3 27 27 H 1.09002 * 109.47639 * 302.96569 * 1 2 3 28 28 H 1.09000 * 109.47557 * 62.96317 * 1 2 3 29 29 H 1.09003 * 110.91030 * 86.27511 * 4 2 1 30 30 H 1.09005 * 110.91164 * 322.67394 * 4 2 1 31 31 H 1.09001 * 109.46933 * 306.45518 * 7 5 4 32 32 H 1.09006 * 109.47108 * 186.45650 * 7 5 4 33 33 H 1.08999 * 109.46904 * 54.71920 * 9 8 7 34 34 H 1.09000 * 109.47244 * 174.71845 * 9 8 7 35 35 H 1.08996 * 109.47286 * 294.72089 * 9 8 7 36 36 H 1.08997 * 109.47024 * 195.88773 * 10 8 7 37 37 H 1.08998 * 109.46647 * 315.88679 * 10 8 7 38 38 H 1.09006 * 109.46786 * 184.44077 * 11 10 8 39 39 H 1.08998 * 109.47699 * 304.44095 * 11 10 8 40 40 H 1.09007 * 109.46861 * 299.99610 * 13 12 11 41 41 H 1.09001 * 109.46867 * 59.99086 * 13 12 11 42 42 H 0.97003 * 120.00340 * 179.97438 * 17 16 14 43 43 H 1.09008 * 109.47264 * 59.99528 * 24 22 5 44 44 H 1.09002 * 109.47392 * 179.97438 * 24 22 5 45 45 H 1.09002 * 109.47346 * 300.00045 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0757 -0.7893 -1.2171 5 6 3.4794 -1.2167 -0.7235 6 1 4.2409 -0.5345 -1.1016 7 6 3.7854 -2.6518 -1.1567 8 7 3.9004 -2.7077 -2.6201 9 6 5.0668 -1.9458 -3.0859 10 6 3.9574 -4.0980 -3.0910 11 6 2.5584 -4.7144 -3.0312 12 8 1.6968 -4.0298 -3.9429 13 6 0.3587 -4.5306 -3.9655 14 6 -0.4571 -3.7394 -4.9552 15 1 0.0003 -2.9343 -5.5109 16 6 -1.7876 -4.0434 -5.1511 17 7 -2.3447 -5.0241 -4.4747 18 14 -2.7991 -3.0622 -6.3773 19 1 -2.1988 -3.1909 -7.7294 20 1 -4.1894 -3.5836 -6.4018 21 1 -2.8131 -1.6326 -5.9759 22 6 3.3839 -1.1254 0.8118 23 1 3.6044 -2.0964 1.2553 24 6 4.3684 -0.0767 1.3329 25 8 2.0384 -0.7352 1.1337 26 1 -0.3634 -1.0262 0.0532 27 1 -0.3634 0.5592 0.8622 28 1 -0.3634 0.4671 -0.9153 29 1 2.1508 -0.1476 -2.0950 30 1 1.4549 -1.6606 -1.4259 31 1 2.9798 -3.3095 -0.8302 32 1 4.7237 -2.9752 -0.7058 33 1 5.9615 -2.3035 -2.5763 34 1 5.1829 -2.0804 -4.1613 35 1 4.9216 -0.8883 -2.8657 36 1 4.3201 -4.1189 -4.1187 37 1 4.6337 -4.6695 -2.4553 38 1 2.6136 -5.7680 -3.3052 39 1 2.1637 -4.6223 -2.0194 40 1 0.3686 -5.5803 -4.2591 41 1 -0.0819 -4.4351 -2.9731 42 1 -3.2808 -5.2378 -4.6122 43 1 4.1285 0.8942 0.8992 44 1 4.2951 -0.0173 2.4188 45 1 5.3830 -0.3593 1.0518 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686397823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:01 Heat of formation + Delta-G solvation = -101.609772 kcal Electronic energy + Delta-G solvation = -22126.962463 eV Core-core repulsion = 18951.229696 eV Total energy + Delta-G solvation = -3175.732767 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.94595 -37.70755 -36.01856 -32.89611 -32.57652 -32.26238 -29.64825 -28.97791 -26.94962 -26.61989 -24.39542 -22.90033 -22.20291 -21.12858 -20.48195 -19.97266 -16.77343 -16.33303 -15.95909 -15.66370 -15.30060 -14.92583 -14.73897 -14.33907 -14.14993 -13.75088 -13.58647 -13.04447 -12.91930 -12.84469 -12.47514 -12.17736 -12.04390 -11.81130 -11.73538 -11.65639 -11.58802 -11.23228 -11.02214 -10.80175 -10.73542 -10.66051 -10.47767 -10.39441 -10.26648 -9.93606 -9.52538 -9.03384 -8.73002 -8.09266 -8.03370 -6.04800 -4.05676 3.35667 3.38219 3.42227 3.86040 4.01514 4.40060 4.69548 4.70454 4.89502 4.93094 5.09636 5.21456 5.26887 5.30052 5.31572 5.33566 5.41371 5.45149 5.48394 5.57559 5.66085 5.71273 5.80459 5.87120 5.89035 5.97018 6.01944 6.03094 6.04720 6.12496 6.16623 6.30616 6.33834 6.36228 6.57599 7.06484 7.17370 7.26021 7.26871 7.51136 7.86468 8.23839 8.69511 9.08949 9.58942 11.06825 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016205 B = 0.005081 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.426753 B = 5509.356524 C = 6595.561553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.062 0.938 4 C -0.128 4.128 5 C -0.113 4.113 6 H 0.081 0.919 7 C 0.065 3.935 8 N -0.524 5.524 9 C 0.027 3.973 10 C 0.061 3.939 11 C 0.069 3.931 12 O -0.379 6.379 13 C 0.195 3.805 14 C -0.509 4.509 15 H 0.065 0.935 16 C 0.056 3.944 17 N -0.900 5.900 18 Si 0.906 3.094 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.076 3.924 23 H 0.089 0.911 24 C -0.168 4.168 25 O -0.371 6.371 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.029 0.971 33 H 0.018 0.982 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.037 0.963 39 H 0.034 0.966 40 H 0.000 1.000 41 H 0.002 0.998 42 H 0.263 0.737 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.160 7.849 9.564 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.080 0.920 4 C -0.166 4.166 5 C -0.132 4.132 6 H 0.099 0.901 7 C -0.063 4.063 8 N -0.248 5.248 9 C -0.122 4.122 10 C -0.067 4.067 11 C -0.010 4.010 12 O -0.298 6.298 13 C 0.121 3.879 14 C -0.548 4.548 15 H 0.083 0.917 16 C -0.145 4.145 17 N -0.540 5.540 18 Si 0.733 3.267 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.200 1.200 22 C 0.018 3.982 23 H 0.107 0.893 24 C -0.225 4.225 25 O -0.291 6.291 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.018 0.982 41 H 0.020 0.980 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.508 8.073 9.453 18.357 hybrid contribution 0.180 -0.174 -0.257 0.359 sum 13.688 7.900 9.196 18.284 Atomic orbital electron populations 1.21761 0.93079 1.03420 1.02077 1.23183 0.95282 0.94843 0.85542 0.92021 1.23089 0.94896 1.01387 0.97218 1.22576 0.99072 0.97384 0.94135 0.90102 1.22218 0.99989 0.96216 0.87913 1.61794 1.40410 1.12744 1.09871 1.22403 0.90390 0.98755 1.00622 1.22161 0.96230 0.87854 1.00461 1.22220 0.90518 0.94394 0.93831 1.87934 1.22743 1.58724 1.60446 1.20149 0.77322 0.94042 0.96406 1.21007 0.94229 1.17115 1.22408 0.91655 1.24930 0.97486 0.95490 0.96558 1.69956 1.12960 1.29445 1.41602 0.86434 0.78712 0.80187 0.81355 1.20096 1.21241 1.20030 1.22708 0.83392 0.97837 0.94277 0.89291 1.22266 0.98934 0.99594 1.01727 1.88899 1.27058 1.73541 1.39573 0.91354 0.92497 0.90891 0.90266 0.89126 0.90219 0.95328 0.96397 0.91394 0.91601 0.90239 0.94304 0.94512 0.94769 0.98175 0.97980 0.92715 0.92419 0.92109 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.65 37.15 0.36 -1.57 16 2 C 0.07 0.91 3.92 -25.68 -0.10 0.81 16 3 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 4 C -0.13 -1.84 5.95 -24.73 -0.15 -1.98 16 5 C -0.11 -1.38 2.58 -89.09 -0.23 -1.61 16 6 H 0.08 0.90 6.12 -51.93 -0.32 0.58 16 7 C 0.06 0.84 3.89 -3.82 -0.01 0.83 16 8 N -0.52 -7.69 4.44 -242.92 -1.08 -8.77 16 9 C 0.03 0.32 9.25 60.06 0.56 0.87 16 10 C 0.06 0.91 5.39 -3.82 -0.02 0.89 16 11 C 0.07 1.29 6.13 37.16 0.23 1.52 16 12 O -0.38 -9.26 10.27 -35.23 -0.36 -9.62 16 13 C 0.20 5.44 5.69 36.00 0.20 5.64 16 14 C -0.51 -15.15 9.43 -34.44 -0.32 -15.47 16 15 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 18 Si 0.91 22.06 29.54 -169.99 -5.02 17.04 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.08 0.90 3.76 -26.16 -0.10 0.80 16 23 H 0.09 1.00 7.69 -51.93 -0.40 0.60 16 24 C -0.17 -1.60 9.30 37.16 0.35 -1.25 16 25 O -0.37 -5.31 10.89 -35.23 -0.38 -5.69 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.59 7.74 -51.93 -0.40 1.19 16 31 H 0.08 1.17 6.52 -51.93 -0.34 0.83 16 32 H 0.03 0.33 8.07 -51.93 -0.42 -0.09 16 33 H 0.02 0.18 8.07 -51.93 -0.42 -0.23 16 34 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 35 H 0.07 0.73 6.66 -51.93 -0.35 0.39 16 36 H 0.08 1.19 7.74 -51.93 -0.40 0.79 16 37 H 0.04 0.49 8.00 -51.93 -0.42 0.08 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.03 0.64 6.68 -51.93 -0.35 0.29 16 40 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 41 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.06 0.55 8.11 -51.92 -0.42 0.13 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 356.92 15.07 5.38 5.38 Total: -1.00 -31.77 356.92 -8.48 -40.25 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -8.41 Total: -3.12 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 0.66 Total: -8.98 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.34 Total: -35.26 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.75 Total: -15.31 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.77 -8.48 -40.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686397823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.364 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds