Wall clock time and date at job start Mon Mar 30 2020 05:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 110.67568 * 2 1 4 4 C 1.54992 * 110.61894 * 237.03650 * 2 1 3 5 5 C 1.54807 * 102.09437 * 204.47478 * 4 2 1 6 6 H 1.09001 * 110.49309 * 262.07160 * 5 4 2 7 7 C 1.53001 * 110.48939 * 139.55702 * 5 4 2 8 8 N 1.46898 * 109.47343 * 66.45523 * 7 5 4 9 9 C 1.46896 * 110.99955 * 66.04345 * 8 7 5 10 10 C 1.46903 * 111.00226 * 190.00258 * 8 7 5 11 11 C 1.52995 * 109.46906 * 75.88134 * 10 8 7 12 12 O 1.42904 * 109.47152 * 64.44933 * 11 10 8 13 13 C 1.42900 * 114.00228 * 179.97438 * 12 11 10 14 14 C 1.50692 * 109.47259 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00264 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99912 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00249 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00071 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46831 * 59.99940 * 18 16 14 20 20 H 1.48500 * 109.47207 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47007 * 299.99976 * 18 16 14 22 22 C 1.54101 * 104.18807 * 20.88189 * 5 4 2 23 23 H 1.08998 * 109.88298 * 121.45233 * 22 5 4 24 24 C 1.53000 * 109.87872 * 242.60585 * 22 5 4 25 25 O 1.43746 * 107.29151 * 2.02562 * 22 5 4 26 26 H 1.08998 * 109.47431 * 182.96549 * 1 2 3 27 27 H 1.09002 * 109.47639 * 302.96569 * 1 2 3 28 28 H 1.09000 * 109.47557 * 62.96317 * 1 2 3 29 29 H 1.09003 * 110.91030 * 86.27511 * 4 2 1 30 30 H 1.09005 * 110.91164 * 322.67394 * 4 2 1 31 31 H 1.09001 * 109.46933 * 306.45518 * 7 5 4 32 32 H 1.09006 * 109.47108 * 186.45650 * 7 5 4 33 33 H 1.08999 * 109.46904 * 54.71920 * 9 8 7 34 34 H 1.09000 * 109.47244 * 174.71845 * 9 8 7 35 35 H 1.08996 * 109.47286 * 294.72089 * 9 8 7 36 36 H 1.08997 * 109.47024 * 195.88773 * 10 8 7 37 37 H 1.08998 * 109.46647 * 315.88679 * 10 8 7 38 38 H 1.09006 * 109.46786 * 184.44077 * 11 10 8 39 39 H 1.08998 * 109.47699 * 304.44095 * 11 10 8 40 40 H 1.09007 * 109.46861 * 299.99610 * 13 12 11 41 41 H 1.09001 * 109.46867 * 59.99086 * 13 12 11 42 42 H 0.97003 * 120.00340 * 179.97438 * 17 16 14 43 43 H 1.09008 * 109.47264 * 59.99528 * 24 22 5 44 44 H 1.09002 * 109.47392 * 179.97438 * 24 22 5 45 45 H 1.09002 * 109.47346 * 300.00045 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0757 -0.7893 -1.2171 5 6 3.4794 -1.2167 -0.7235 6 1 4.2409 -0.5345 -1.1016 7 6 3.7854 -2.6518 -1.1567 8 7 3.9004 -2.7077 -2.6201 9 6 5.0668 -1.9458 -3.0859 10 6 3.9574 -4.0980 -3.0910 11 6 2.5584 -4.7144 -3.0312 12 8 1.6968 -4.0298 -3.9429 13 6 0.3587 -4.5306 -3.9655 14 6 -0.4571 -3.7394 -4.9552 15 1 0.0003 -2.9343 -5.5109 16 6 -1.7876 -4.0434 -5.1511 17 7 -2.3447 -5.0241 -4.4747 18 14 -2.7991 -3.0622 -6.3773 19 1 -2.1988 -3.1909 -7.7294 20 1 -4.1894 -3.5836 -6.4018 21 1 -2.8131 -1.6326 -5.9759 22 6 3.3839 -1.1254 0.8118 23 1 3.6044 -2.0964 1.2553 24 6 4.3684 -0.0767 1.3329 25 8 2.0384 -0.7352 1.1337 26 1 -0.3634 -1.0262 0.0532 27 1 -0.3634 0.5592 0.8622 28 1 -0.3634 0.4671 -0.9153 29 1 2.1508 -0.1476 -2.0950 30 1 1.4549 -1.6606 -1.4259 31 1 2.9798 -3.3095 -0.8302 32 1 4.7237 -2.9752 -0.7058 33 1 5.9615 -2.3035 -2.5763 34 1 5.1829 -2.0804 -4.1613 35 1 4.9216 -0.8883 -2.8657 36 1 4.3201 -4.1189 -4.1187 37 1 4.6337 -4.6695 -2.4553 38 1 2.6136 -5.7680 -3.3052 39 1 2.1637 -4.6223 -2.0194 40 1 0.3686 -5.5803 -4.2591 41 1 -0.0819 -4.4351 -2.9731 42 1 -3.2808 -5.2378 -4.6122 43 1 4.1285 0.8942 0.8992 44 1 4.2951 -0.0173 2.4188 45 1 5.3830 -0.3593 1.0518 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686397823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:00 Heat of formation + Delta-G solvation = -122.901174 kcal Electronic energy + Delta-G solvation = -22127.885728 eV Core-core repulsion = 18951.229696 eV Total energy + Delta-G solvation = -3176.656032 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.97946 -39.08556 -37.65994 -34.90862 -33.78826 -33.37268 -31.05949 -29.97383 -28.91611 -27.78307 -25.53690 -24.46404 -23.97200 -22.28870 -21.58971 -21.01503 -18.60305 -17.84072 -17.39296 -17.11377 -16.58909 -16.43728 -16.02236 -15.77051 -15.52173 -15.18108 -14.83881 -14.45615 -13.97634 -13.84121 -13.62659 -13.55108 -13.42631 -13.18929 -12.94081 -12.80061 -12.74721 -12.70429 -12.63408 -12.46448 -12.29065 -12.07923 -11.82277 -11.54142 -11.47551 -11.39986 -11.22766 -10.83115 -10.53562 -10.16174 -9.10997 -8.29861 -6.41884 1.39864 1.44952 1.53250 2.36013 2.84041 2.97385 3.03784 3.27678 3.66932 3.70347 3.89818 4.10105 4.18483 4.24053 4.25119 4.32333 4.40351 4.41651 4.50123 4.56588 4.59345 4.63019 4.67254 4.72722 4.77230 4.83957 4.86593 4.91232 4.97036 5.01879 5.10462 5.12869 5.19978 5.20386 5.23605 5.34273 5.39873 5.56933 5.99262 6.06009 6.15409 6.24676 6.59125 6.88137 7.30309 8.82418 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016205 B = 0.005081 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.426753 B = 5509.356524 C = 6595.561553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 H 0.084 0.916 4 C -0.128 4.128 5 C -0.103 4.103 6 H 0.101 0.899 7 C 0.068 3.932 8 N -0.554 5.554 9 C 0.029 3.971 10 C 0.070 3.930 11 C 0.059 3.941 12 O -0.391 6.391 13 C 0.212 3.788 14 C -0.542 4.542 15 H 0.061 0.939 16 C 0.007 3.993 17 N -0.932 5.932 18 Si 0.981 3.019 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.265 1.265 22 C 0.072 3.928 23 H 0.091 0.909 24 C -0.161 4.161 25 O -0.393 6.393 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.040 0.960 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.029 0.971 40 H -0.019 1.019 41 H -0.023 1.023 42 H 0.270 0.730 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.654 9.382 9.407 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 H 0.102 0.898 4 C -0.166 4.166 5 C -0.122 4.122 6 H 0.119 0.881 7 C -0.060 4.060 8 N -0.278 5.278 9 C -0.119 4.119 10 C -0.058 4.058 11 C -0.018 4.018 12 O -0.311 6.311 13 C 0.137 3.863 14 C -0.580 4.580 15 H 0.079 0.921 16 C -0.191 4.191 17 N -0.572 5.572 18 Si 0.804 3.196 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.190 1.190 22 C 0.014 3.986 23 H 0.109 0.891 24 C -0.218 4.218 25 O -0.314 6.314 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.047 0.953 40 H -0.001 1.001 41 H -0.005 1.005 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.034 9.603 9.308 20.121 hybrid contribution -0.245 -0.713 -0.147 0.768 sum 14.789 8.890 9.161 19.537 Atomic orbital electron populations 1.21773 0.93591 1.02082 1.02976 1.23210 0.95040 0.95553 0.84710 0.89803 1.22978 0.95955 0.99832 0.97874 1.22547 0.97939 0.97197 0.94528 0.88135 1.22169 1.00169 0.96306 0.87333 1.61708 1.42567 1.12663 1.10867 1.22415 0.90045 0.98790 1.00605 1.22052 0.93589 0.88704 1.01415 1.22575 0.91838 0.94988 0.92435 1.87887 1.21587 1.59564 1.62054 1.19739 0.79124 0.92829 0.94634 1.21315 0.95443 1.17783 1.23462 0.92120 1.25946 0.98434 0.96378 0.98372 1.70073 1.13637 1.30677 1.42790 0.85269 0.77017 0.78688 0.78658 1.18921 1.20014 1.19009 1.22882 0.82887 0.98976 0.93856 0.89077 1.22214 0.99094 0.98718 1.01787 1.88873 1.28629 1.73934 1.39927 0.93858 0.90989 0.90509 0.90503 0.93436 0.92869 0.92813 0.94188 0.91724 0.90808 0.90081 0.91094 0.93840 0.95267 1.00134 1.00542 0.92140 0.92218 0.91874 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.65 71.98 0.69 -3.28 16 2 C 0.07 1.88 3.92 31.27 0.12 2.01 16 3 H 0.08 1.85 8.11 -2.39 -0.02 1.83 16 4 C -0.13 -3.75 5.95 31.89 0.19 -3.56 16 5 C -0.10 -2.39 2.58 -9.80 -0.03 -2.42 16 6 H 0.10 1.95 6.12 -2.39 -0.01 1.94 16 7 C 0.07 1.70 3.89 86.30 0.34 2.04 16 8 N -0.55 -15.63 4.44 -922.47 -4.09 -19.73 16 9 C 0.03 0.61 9.25 127.69 1.18 1.79 16 10 C 0.07 2.03 5.39 86.30 0.47 2.50 16 11 C 0.06 2.29 6.13 71.98 0.44 2.73 16 12 O -0.39 -19.86 10.27 -148.98 -1.53 -21.39 16 13 C 0.21 12.39 5.69 71.23 0.41 12.80 16 14 C -0.54 -33.19 9.43 25.60 0.24 -32.95 16 15 H 0.06 3.68 7.81 -2.91 -0.02 3.65 16 16 C 0.01 0.41 5.46 84.65 0.46 0.87 16 17 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 18 Si 0.98 45.22 29.54 68.60 2.03 47.25 16 19 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 22 C 0.07 1.59 3.76 30.97 0.12 1.70 16 23 H 0.09 1.94 7.69 -2.39 -0.02 1.92 16 24 C -0.16 -2.60 9.30 71.98 0.67 -1.93 16 25 O -0.39 -11.08 10.89 -148.98 -1.62 -12.70 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 1.79 7.74 -2.38 -0.02 1.77 16 31 H 0.05 1.60 6.52 -2.39 -0.02 1.59 16 32 H 0.05 1.08 8.07 -2.38 -0.02 1.06 16 33 H 0.04 0.68 8.07 -2.39 -0.02 0.66 16 34 H 0.06 1.41 7.85 -2.39 -0.02 1.39 16 35 H 0.07 1.44 6.66 -2.39 -0.02 1.42 16 36 H 0.08 2.32 7.74 -2.39 -0.02 2.31 16 37 H 0.07 1.62 8.00 -2.39 -0.02 1.60 16 38 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.03 1.15 6.68 -2.39 -0.02 1.13 16 40 H -0.02 -1.16 8.14 -2.38 -0.02 -1.18 16 41 H -0.02 -1.44 8.14 -2.39 -0.02 -1.45 16 42 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.06 0.95 8.11 -2.38 -0.02 0.93 16 44 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -70.17 356.92 1.29 -68.89 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.92 Total: 12.48 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 5.30 Total: -17.69 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -3.81 Total: -76.84 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -3.15 Total: -34.09 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -70.17 1.29 -68.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686397823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.015 kcal (2) G-P(sol) polarization free energy of solvation -70.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds