Wall clock time and date at job start Mon Mar 30 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46898 * 109.47247 * 2 1 4 4 C 1.46907 * 110.99789 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.54330 * 34.82978 * 4 3 2 6 6 C 1.53173 * 109.54238 * 274.55731 * 4 3 2 7 7 C 1.53092 * 109.16094 * 183.15314 * 6 4 3 8 8 O 1.42908 * 109.41500 * 57.60866 * 7 6 4 9 9 C 1.42903 * 114.15304 * 298.87576 * 8 7 6 10 10 C 1.53094 * 109.41537 * 61.05998 * 9 8 7 11 11 H 1.08997 * 109.52194 * 62.41974 * 10 9 8 12 12 O 1.42899 * 109.52462 * 182.55342 * 10 9 8 13 13 C 1.42903 * 113.99629 * 269.87272 * 12 10 9 14 14 C 1.53000 * 109.46726 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46912 * 179.97438 * 16 15 14 18 18 H 1.08009 * 120.00339 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00310 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00776 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99696 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47265 * 89.99852 * 21 19 17 23 23 H 1.48502 * 109.47140 * 209.99881 * 21 19 17 24 24 H 1.48501 * 109.46982 * 329.99994 * 21 19 17 25 25 H 1.08999 * 109.47192 * 300.00158 * 1 2 3 26 26 H 1.09008 * 109.47462 * 59.99473 * 1 2 3 27 27 H 1.08996 * 109.47699 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46987 * 240.00331 * 2 1 3 29 29 H 1.08997 * 109.47039 * 120.00747 * 2 1 3 30 30 H 1.00900 * 110.99845 * 56.05019 * 3 2 1 31 31 H 1.08996 * 109.52614 * 303.05921 * 6 4 3 32 32 H 1.08998 * 109.52459 * 63.18958 * 6 4 3 33 33 H 1.09004 * 109.48117 * 177.59094 * 7 6 4 34 34 H 1.08994 * 109.48378 * 297.62477 * 7 6 4 35 35 H 1.09001 * 109.43008 * 301.10560 * 9 8 7 36 36 H 1.09010 * 109.53588 * 181.07305 * 9 8 7 37 37 H 1.09002 * 109.47382 * 59.99956 * 13 12 10 38 38 H 1.09001 * 109.46938 * 299.99942 * 13 12 10 39 39 H 1.09001 * 109.47194 * 299.99575 * 14 13 12 40 40 H 1.08992 * 109.47399 * 59.99748 * 14 13 12 41 41 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 42 42 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 43 43 H 1.08992 * 109.47098 * 299.99158 * 16 15 14 44 44 H 1.09001 * 109.47583 * 60.00267 * 16 15 14 45 45 H 0.96996 * 120.00667 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4882 1.4241 -0.0006 5 1 3.8749 0.5910 -0.5876 6 6 4.0040 1.3228 1.4381 7 6 5.5302 1.4435 1.4344 8 8 5.9074 2.6804 0.8260 9 6 5.4928 2.8130 -0.5351 10 6 3.9652 2.7457 -0.6107 11 1 3.5359 3.5793 -0.0549 12 8 3.5509 2.8183 -1.9764 13 6 3.3180 4.1488 -2.4431 14 6 2.8812 4.1059 -3.9088 15 6 2.6324 5.5303 -4.4086 16 6 2.1950 5.4874 -5.8741 17 6 1.9493 6.8904 -6.3663 18 1 2.0914 7.7290 -5.7006 19 6 1.5442 7.1038 -7.6668 20 7 1.3303 8.3282 -8.0966 21 14 1.2991 5.6536 -8.8185 22 1 -0.1039 5.1765 -8.7221 23 1 1.5836 6.0758 -10.2136 24 1 2.2227 4.5557 -8.4355 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.6442 1.9012 0.7814 31 1 3.5764 2.1277 2.0359 32 1 3.7149 0.3612 1.8619 33 1 5.8996 1.4151 2.4595 34 1 5.9590 0.6154 0.8702 35 1 5.9220 2.0034 -1.1254 36 1 5.8343 3.7705 -0.9286 37 1 4.2352 4.7310 -2.3538 38 1 2.5339 4.6118 -1.8440 39 1 3.6650 3.6426 -4.5081 40 1 1.9640 3.5238 -3.9977 41 1 1.8487 5.9940 -3.8094 42 1 3.5499 6.1121 -4.3198 43 1 2.9782 5.0237 -6.4736 44 1 1.2773 4.9059 -5.9626 45 1 1.0449 8.4783 -9.0114 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686569023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:50 Heat of formation + Delta-G solvation = -116.381693 kcal Electronic energy + Delta-G solvation = -21191.793047 eV Core-core repulsion = 18015.419721 eV Total energy + Delta-G solvation = -3176.373326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.13348 -37.50838 -36.73520 -34.67908 -32.77772 -32.25118 -30.63005 -29.18275 -28.57712 -24.98476 -24.19612 -23.39373 -22.30235 -21.50021 -20.66428 -19.95408 -17.15637 -16.72333 -16.58005 -16.16746 -15.98477 -15.47596 -15.13144 -14.89572 -14.37665 -14.17437 -13.92318 -13.58384 -13.25941 -13.12794 -12.58483 -12.40800 -12.16550 -12.02380 -11.86986 -11.75200 -11.62553 -11.47698 -11.28945 -11.19307 -10.76977 -10.68959 -10.45060 -10.17266 -9.84980 -9.64592 -9.52118 -9.23189 -9.11917 -8.61219 -8.48741 -5.99573 -3.97172 3.34115 3.35367 3.42248 3.47401 3.72019 3.84745 4.41178 4.46857 4.50335 4.62148 4.76307 4.82322 4.88814 4.97703 5.05094 5.13898 5.25670 5.30670 5.32842 5.34519 5.40231 5.40860 5.53279 5.55742 5.69301 5.74739 5.76832 5.78003 5.96398 6.07402 6.09064 6.42296 6.70103 6.73366 6.75962 6.80869 6.96818 7.09650 7.37475 7.41994 7.51000 7.85318 8.59433 9.05565 9.63441 11.14018 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.021792 B = 0.003256 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.570888 B = 8598.353635 C = 9490.991593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 N -0.674 5.674 4 C 0.090 3.910 5 H 0.086 0.914 6 C -0.183 4.183 7 C 0.062 3.938 8 O -0.377 6.377 9 C 0.038 3.962 10 C 0.071 3.929 11 H 0.067 0.933 12 O -0.364 6.364 13 C 0.064 3.936 14 C -0.117 4.117 15 C -0.100 4.100 16 C -0.014 4.014 17 C -0.520 4.520 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.025 0.975 30 H 0.339 0.661 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.043 0.957 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.016 0.984 44 H 0.012 0.988 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.224 -18.324 21.630 28.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.072 4.072 3 N -0.303 5.303 4 C -0.021 4.021 5 H 0.104 0.896 6 C -0.223 4.223 7 C -0.016 4.016 8 O -0.296 6.296 9 C -0.039 4.039 10 C 0.012 3.988 11 H 0.085 0.915 12 O -0.282 6.282 13 C -0.012 4.012 14 C -0.155 4.155 15 C -0.137 4.137 16 C -0.051 4.051 17 C -0.558 4.558 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.545 5.545 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.157 0.843 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.118 0.882 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.034 0.966 44 H 0.030 0.970 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.167 -18.180 20.749 28.067 hybrid contribution -0.160 -0.866 0.254 0.916 sum 5.007 -19.046 21.003 28.791 Atomic orbital electron populations 1.21768 0.94816 1.01668 1.02647 1.21931 0.95843 0.89261 1.00200 1.60445 1.06410 1.13673 1.49817 1.21699 0.88325 0.98077 0.93978 0.89595 1.22982 0.97919 1.03128 0.98267 1.22542 0.93329 0.86900 0.98785 1.87960 1.77978 1.37682 1.25981 1.23176 0.94478 1.03300 0.82994 1.22587 0.93509 0.97718 0.85005 0.91505 1.87957 1.87751 1.28048 1.24492 1.22700 0.98906 0.83055 0.96557 1.21635 1.01691 0.99537 0.92587 1.21395 1.00688 0.93057 0.98607 1.19564 0.95880 0.97705 0.91950 1.21186 1.45332 0.91960 0.97275 0.91093 1.25044 0.94879 0.95564 0.98138 1.69920 1.47470 1.19995 1.17150 0.86763 0.78985 0.83463 0.80002 1.20310 1.21458 1.18942 0.92966 0.91425 0.92267 0.90907 0.95727 0.84296 0.90584 0.90525 0.88653 0.92904 0.92201 0.88231 0.93867 0.93387 0.91901 0.91618 0.92758 0.92787 0.96613 0.97009 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.17 37.15 0.38 -0.80 16 2 C 0.06 0.47 6.21 -3.83 -0.02 0.45 16 3 N -0.67 -6.54 6.18 -106.53 -0.66 -7.19 16 4 C 0.09 0.85 2.23 -67.53 -0.15 0.70 16 5 H 0.09 0.87 7.80 -51.93 -0.41 0.46 16 6 C -0.18 -1.32 5.40 -26.59 -0.14 -1.46 16 7 C 0.06 0.47 6.84 37.20 0.25 0.72 16 8 O -0.38 -3.96 10.76 -35.23 -0.38 -4.34 16 9 C 0.04 0.40 6.47 37.21 0.24 0.64 16 10 C 0.07 0.81 2.45 -26.59 -0.07 0.74 16 11 H 0.07 0.77 7.79 -51.93 -0.40 0.37 16 12 O -0.36 -5.17 9.92 -35.23 -0.35 -5.52 16 13 C 0.06 0.94 5.75 37.16 0.21 1.15 16 14 C -0.12 -2.00 5.58 -26.73 -0.15 -2.15 16 15 C -0.10 -2.02 5.15 -26.73 -0.14 -2.16 16 16 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 17 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 18 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 19 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 21 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 29 H 0.02 0.17 7.54 -51.93 -0.39 -0.22 16 30 H 0.34 2.91 8.44 -39.29 -0.33 2.58 16 31 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 32 H 0.08 0.45 7.57 -51.93 -0.39 0.06 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 1.04 7.94 -51.92 -0.41 0.63 16 37 H 0.04 0.59 7.94 -51.93 -0.41 0.18 16 38 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 44 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 45 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 356.21 15.07 5.37 5.37 Total: -1.00 -32.04 356.21 -8.63 -40.67 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -8.59 Total: -2.51 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -0.13 Total: -16.33 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.11 Total: -34.95 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.73 Total: -9.86 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.04 -8.63 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686569023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.712 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds