Wall clock time and date at job start Mon Mar 30 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47055 * 2 1 4 4 C 1.46897 * 111.00299 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.54123 * 34.82227 * 4 3 2 6 6 C 1.53180 * 109.54095 * 274.55798 * 4 3 2 7 7 C 1.53100 * 109.16070 * 183.15125 * 6 4 3 8 8 O 1.42898 * 109.41577 * 57.60373 * 7 6 4 9 9 C 1.43033 * 114.13611 * 298.84183 * 8 7 6 10 10 C 1.53086 * 109.34554 * 61.11954 * 9 8 7 11 11 H 1.08996 * 109.52672 * 182.48666 * 10 9 8 12 12 O 1.42899 * 109.52587 * 62.35735 * 10 9 8 13 13 C 1.42895 * 114.00181 * 90.12465 * 12 10 9 14 14 C 1.52993 * 109.47611 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.47481 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.46997 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46573 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47487 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47233 * 120.00158 * 21 19 17 24 24 H 1.48508 * 109.46883 * 239.99963 * 21 19 17 25 25 H 1.09007 * 109.47124 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47015 * 299.99664 * 1 2 3 27 27 H 1.09000 * 109.46960 * 60.00088 * 1 2 3 28 28 H 1.08996 * 109.46994 * 240.00331 * 2 1 3 29 29 H 1.09000 * 109.46960 * 119.99912 * 2 1 3 30 30 H 1.00901 * 111.00008 * 303.95720 * 3 2 1 31 31 H 1.08994 * 109.52464 * 303.05185 * 6 4 3 32 32 H 1.09001 * 109.52508 * 63.18454 * 6 4 3 33 33 H 1.08999 * 109.47839 * 177.59610 * 7 6 4 34 34 H 1.09003 * 109.47878 * 297.62382 * 7 6 4 35 35 H 1.08995 * 109.46479 * 301.18901 * 9 8 7 36 36 H 1.09005 * 109.56707 * 181.10858 * 9 8 7 37 37 H 1.09004 * 109.47143 * 60.00334 * 13 12 10 38 38 H 1.08996 * 109.47350 * 300.00801 * 13 12 10 39 39 H 1.09000 * 109.46925 * 60.00405 * 14 13 12 40 40 H 1.08996 * 109.47340 * 300.00713 * 14 13 12 41 41 H 1.09000 * 109.46866 * 60.00179 * 15 14 13 42 42 H 1.09001 * 109.46611 * 300.00296 * 15 14 13 43 43 H 1.09000 * 109.47486 * 60.00167 * 16 15 14 44 44 H 1.09001 * 109.47362 * 299.99445 * 16 15 14 45 45 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4243 -0.0006 5 1 3.8749 0.5911 -0.5875 6 6 4.0039 1.3231 1.4382 7 6 5.5301 1.4439 1.4345 8 8 5.9072 2.6807 0.8261 9 6 5.4928 2.8125 -0.5365 10 6 3.9652 2.7458 -0.6107 11 1 3.6482 2.8017 -1.6521 12 8 3.4034 3.8387 0.1187 13 6 3.1928 5.0142 -0.6661 14 6 2.5922 6.1133 0.2126 15 6 2.3661 7.3717 -0.6279 16 6 1.7661 8.4709 0.2511 17 6 1.5428 9.7102 -0.5770 18 1 1.8071 9.7148 -1.6241 19 6 1.0060 10.8397 0.0037 20 7 0.6893 10.8358 1.2801 21 14 0.7287 12.3755 -1.0229 22 1 1.1651 12.1229 -2.4195 23 1 -0.7145 12.7254 -1.0103 24 1 1.5155 13.4995 -0.4545 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6441 1.9013 -0.7813 31 1 3.5763 2.1280 2.0359 32 1 3.7148 0.3614 1.8620 33 1 5.8995 1.4154 2.4596 34 1 5.9590 0.6157 0.8703 35 1 5.9211 2.0022 -1.1265 36 1 5.8344 3.7696 -0.9311 37 1 2.5084 4.7875 -1.4836 38 1 4.1449 5.3547 -1.0732 39 1 3.2770 6.3399 1.0298 40 1 1.6403 5.7731 0.6201 41 1 1.6812 7.1447 -1.4448 42 1 3.3180 7.7120 -1.0356 43 1 2.4513 8.6978 1.0678 44 1 0.8143 8.1308 0.6592 45 1 0.3120 11.6305 1.6886 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686569024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:53 Heat of formation + Delta-G solvation = -116.755883 kcal Electronic energy + Delta-G solvation = -21326.023711 eV Core-core repulsion = 18149.634159 eV Total energy + Delta-G solvation = -3176.389552 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.06483 -37.20219 -36.59825 -34.51075 -32.69004 -32.15053 -30.64160 -29.01582 -28.32312 -24.83509 -24.07343 -23.70315 -22.04158 -21.64754 -20.35823 -19.78932 -16.77389 -16.63783 -16.42792 -16.16329 -15.82897 -15.51486 -14.82849 -14.79583 -14.51116 -14.34192 -13.72517 -13.47777 -13.36077 -12.85003 -12.47217 -12.22964 -12.11773 -11.92630 -11.72187 -11.62911 -11.30482 -11.19306 -11.15046 -10.83511 -10.72173 -10.55188 -10.44983 -10.33348 -10.00433 -9.60186 -9.25988 -9.10603 -8.98031 -8.62281 -8.29692 -5.94450 -3.96729 3.34140 3.41243 3.45319 3.54955 3.71481 3.98586 4.40250 4.50602 4.63447 4.68381 4.84161 4.92494 4.99234 5.03399 5.15447 5.21038 5.24010 5.30505 5.39449 5.41235 5.48103 5.55794 5.58695 5.62251 5.74900 5.81954 5.84850 5.96119 6.18285 6.19648 6.26854 6.55697 6.80645 6.86336 6.98697 7.02799 7.15020 7.18019 7.46696 7.75137 7.90765 8.06886 8.48911 9.10951 9.66926 11.16957 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.003166 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.948512 B = 8840.700123 C = 9580.364992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 N -0.674 5.674 4 C 0.093 3.907 5 H 0.050 0.950 6 C -0.140 4.140 7 C 0.061 3.939 8 O -0.368 6.368 9 C 0.043 3.957 10 C 0.053 3.947 11 H 0.064 0.936 12 O -0.352 6.352 13 C 0.062 3.938 14 C -0.113 4.113 15 C -0.107 4.107 16 C 0.021 3.979 17 C -0.519 4.519 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.024 0.976 29 H 0.070 0.930 30 H 0.343 0.657 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.744 -24.767 -3.977 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.075 4.075 3 N -0.306 5.306 4 C -0.017 4.017 5 H 0.068 0.932 6 C -0.178 4.178 7 C -0.017 4.017 8 O -0.286 6.286 9 C -0.035 4.035 10 C -0.006 4.006 11 H 0.082 0.918 12 O -0.271 6.271 13 C -0.015 4.015 14 C -0.151 4.151 15 C -0.144 4.144 16 C -0.016 4.016 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.162 0.838 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.661 -24.456 -2.869 25.509 hybrid contribution -0.133 0.426 -1.904 1.956 sum 6.528 -24.030 -4.773 25.354 Atomic orbital electron populations 1.21766 0.94756 1.01554 1.02802 1.21987 0.95953 0.89531 1.00062 1.60368 1.06591 1.13037 1.50628 1.21624 0.88489 0.94552 0.97059 0.93177 1.22141 0.95528 1.03341 0.96784 1.22607 0.94199 0.86210 0.98645 1.88021 1.77595 1.37729 1.25247 1.23093 0.93734 1.02479 0.84219 1.22845 0.93845 0.88452 0.95497 0.91833 1.88089 1.82467 1.20705 1.35840 1.22742 0.98606 0.85717 0.94390 1.21591 1.01008 0.93713 0.98792 1.21571 1.00064 0.94258 0.98556 1.19094 0.95945 0.91825 0.94763 1.21317 1.41123 0.97197 0.96150 0.92720 1.25039 0.95765 0.98840 0.94934 1.69983 1.43669 1.28996 1.10807 0.86554 0.77777 0.83286 0.80479 1.19792 1.21039 1.21045 0.92335 0.91505 0.92775 0.95795 0.91117 0.83776 0.89005 0.91472 0.88650 0.93846 0.92767 0.88351 0.93971 0.94000 0.91680 0.91643 0.93481 0.93472 0.96520 0.96516 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.17 37.16 0.38 -0.81 16 2 C 0.05 0.45 6.21 -3.83 -0.02 0.42 16 3 N -0.67 -7.00 6.13 -106.53 -0.65 -7.65 16 4 C 0.09 0.93 2.36 -67.53 -0.16 0.77 16 5 H 0.05 0.43 7.80 -51.93 -0.41 0.03 16 6 C -0.14 -1.44 5.47 -26.59 -0.15 -1.59 16 7 C 0.06 0.59 6.84 37.21 0.25 0.85 16 8 O -0.37 -4.68 10.70 -42.72 -0.46 -5.14 16 9 C 0.04 0.45 6.50 37.20 0.24 0.69 16 10 C 0.05 0.59 2.29 -26.59 -0.06 0.53 16 11 H 0.06 0.61 7.79 -51.93 -0.40 0.21 16 12 O -0.35 -5.18 9.21 -42.72 -0.39 -5.58 16 13 C 0.06 0.92 5.75 37.15 0.21 1.14 16 14 C -0.11 -2.08 5.58 -26.73 -0.15 -2.23 16 15 C -0.11 -2.26 5.15 -26.73 -0.14 -2.39 16 16 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 17 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 18 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 21 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.02 0.18 8.06 -51.93 -0.42 -0.24 16 29 H 0.07 0.58 7.54 -51.93 -0.39 0.19 16 30 H 0.34 3.54 8.36 -39.29 -0.33 3.22 16 31 H 0.09 1.23 7.83 -51.93 -0.41 0.82 16 32 H 0.07 0.59 7.57 -51.93 -0.39 0.20 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.10 1.04 7.84 -51.93 -0.41 0.63 16 37 H 0.04 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.04 0.59 7.84 -51.93 -0.41 0.18 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -32.07 358.54 -9.12 -41.19 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -8.60 Total: -2.29 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -0.14 Total: -16.11 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.08 Total: -34.49 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.85 Total: -10.71 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.07 -9.12 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686569024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.571 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds