Wall clock time and date at job start Mon Mar 30 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47055 * 2 1 4 4 C 1.46897 * 111.00299 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.54123 * 34.82227 * 4 3 2 6 6 C 1.53180 * 109.54095 * 274.55798 * 4 3 2 7 7 C 1.53100 * 109.16070 * 183.15125 * 6 4 3 8 8 O 1.42898 * 109.41577 * 57.60373 * 7 6 4 9 9 C 1.43033 * 114.13611 * 298.84183 * 8 7 6 10 10 C 1.53086 * 109.34554 * 61.11954 * 9 8 7 11 11 H 1.08996 * 109.52672 * 182.48666 * 10 9 8 12 12 O 1.42899 * 109.52587 * 62.35735 * 10 9 8 13 13 C 1.42895 * 114.00181 * 90.12465 * 12 10 9 14 14 C 1.52993 * 109.47611 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.47481 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.46997 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46573 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47487 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47233 * 120.00158 * 21 19 17 24 24 H 1.48508 * 109.46883 * 239.99963 * 21 19 17 25 25 H 1.09007 * 109.47124 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47015 * 299.99664 * 1 2 3 27 27 H 1.09000 * 109.46960 * 60.00088 * 1 2 3 28 28 H 1.08996 * 109.46994 * 240.00331 * 2 1 3 29 29 H 1.09000 * 109.46960 * 119.99912 * 2 1 3 30 30 H 1.00901 * 111.00008 * 303.95720 * 3 2 1 31 31 H 1.08994 * 109.52464 * 303.05185 * 6 4 3 32 32 H 1.09001 * 109.52508 * 63.18454 * 6 4 3 33 33 H 1.08999 * 109.47839 * 177.59610 * 7 6 4 34 34 H 1.09003 * 109.47878 * 297.62382 * 7 6 4 35 35 H 1.08995 * 109.46479 * 301.18901 * 9 8 7 36 36 H 1.09005 * 109.56707 * 181.10858 * 9 8 7 37 37 H 1.09004 * 109.47143 * 60.00334 * 13 12 10 38 38 H 1.08996 * 109.47350 * 300.00801 * 13 12 10 39 39 H 1.09000 * 109.46925 * 60.00405 * 14 13 12 40 40 H 1.08996 * 109.47340 * 300.00713 * 14 13 12 41 41 H 1.09000 * 109.46866 * 60.00179 * 15 14 13 42 42 H 1.09001 * 109.46611 * 300.00296 * 15 14 13 43 43 H 1.09000 * 109.47486 * 60.00167 * 16 15 14 44 44 H 1.09001 * 109.47362 * 299.99445 * 16 15 14 45 45 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4243 -0.0006 5 1 3.8749 0.5911 -0.5875 6 6 4.0039 1.3231 1.4382 7 6 5.5301 1.4439 1.4345 8 8 5.9072 2.6807 0.8261 9 6 5.4928 2.8125 -0.5365 10 6 3.9652 2.7458 -0.6107 11 1 3.6482 2.8017 -1.6521 12 8 3.4034 3.8387 0.1187 13 6 3.1928 5.0142 -0.6661 14 6 2.5922 6.1133 0.2126 15 6 2.3661 7.3717 -0.6279 16 6 1.7661 8.4709 0.2511 17 6 1.5428 9.7102 -0.5770 18 1 1.8071 9.7148 -1.6241 19 6 1.0060 10.8397 0.0037 20 7 0.6893 10.8358 1.2801 21 14 0.7287 12.3755 -1.0229 22 1 1.1651 12.1229 -2.4195 23 1 -0.7145 12.7254 -1.0103 24 1 1.5155 13.4995 -0.4545 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6441 1.9013 -0.7813 31 1 3.5763 2.1280 2.0359 32 1 3.7148 0.3614 1.8620 33 1 5.8995 1.4154 2.4596 34 1 5.9590 0.6157 0.8703 35 1 5.9211 2.0022 -1.1265 36 1 5.8344 3.7696 -0.9311 37 1 2.5084 4.7875 -1.4836 38 1 4.1449 5.3547 -1.0732 39 1 3.2770 6.3399 1.0298 40 1 1.6403 5.7731 0.6201 41 1 1.6812 7.1447 -1.4448 42 1 3.3180 7.7120 -1.0356 43 1 2.4513 8.6978 1.0678 44 1 0.8143 8.1308 0.6592 45 1 0.3120 11.6305 1.6886 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686569024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:53 Heat of formation + Delta-G solvation = -138.111914 kcal Electronic energy + Delta-G solvation = -21326.949778 eV Core-core repulsion = 18149.634159 eV Total energy + Delta-G solvation = -3177.315619 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.91215 -38.27760 -37.38248 -36.28908 -34.34915 -33.26667 -31.58997 -30.30229 -29.52792 -26.61769 -24.91858 -24.52329 -23.34986 -22.70971 -21.83546 -20.91181 -18.44696 -17.61044 -17.52821 -17.33456 -16.79203 -16.51438 -16.29953 -15.96761 -15.60027 -15.32009 -14.83077 -14.60580 -14.33908 -14.22332 -13.84754 -13.64037 -13.35366 -12.96954 -12.81500 -12.67619 -12.62846 -12.50135 -12.36303 -12.29861 -12.06173 -11.95687 -11.59704 -11.47042 -11.37047 -11.31014 -11.06208 -10.90444 -10.55904 -10.04491 -9.33544 -8.19288 -6.31202 1.40324 1.41193 1.54680 2.41067 2.62345 2.95210 3.13511 3.21589 3.60943 3.86139 3.89528 4.09761 4.16344 4.18735 4.23253 4.31633 4.34912 4.44061 4.46306 4.48423 4.57548 4.63097 4.64967 4.72327 4.74755 4.84404 4.89247 4.96488 5.05875 5.12023 5.19383 5.26273 5.30769 5.31849 5.40916 5.54198 5.76194 5.86455 6.08259 6.22895 6.24963 6.41402 6.48087 6.86614 7.38260 8.93121 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.003166 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.948512 B = 8840.700123 C = 9580.364992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 N -0.693 5.693 4 C 0.094 3.906 5 H 0.075 0.925 6 C -0.136 4.136 7 C 0.059 3.941 8 O -0.399 6.399 9 C 0.039 3.961 10 C 0.047 3.953 11 H 0.083 0.917 12 O -0.376 6.376 13 C 0.073 3.927 14 C -0.106 4.106 15 C -0.092 4.092 16 C 0.021 3.979 17 C -0.543 4.543 18 H 0.063 0.937 19 C -0.005 4.005 20 N -0.936 5.936 21 Si 0.969 3.031 22 H -0.259 1.259 23 H -0.278 1.278 24 H -0.278 1.278 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.342 0.658 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.055 0.945 43 H -0.013 1.013 44 H -0.011 1.011 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.370 -25.932 -6.183 27.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.073 4.073 3 N -0.326 5.326 4 C -0.015 4.015 5 H 0.092 0.908 6 C -0.174 4.174 7 C -0.018 4.018 8 O -0.318 6.318 9 C -0.038 4.038 10 C -0.011 4.011 11 H 0.101 0.899 12 O -0.295 6.295 13 C -0.004 4.004 14 C -0.143 4.143 15 C -0.130 4.130 16 C -0.016 4.016 17 C -0.581 4.581 18 H 0.081 0.919 19 C -0.202 4.202 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.183 1.183 23 H -0.203 1.203 24 H -0.204 1.204 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.161 0.839 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.006 0.994 44 H 0.007 0.993 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.294 -25.646 -5.083 27.143 hybrid contribution -0.334 0.729 -1.150 1.402 sum 6.960 -24.917 -6.232 26.611 Atomic orbital electron populations 1.21748 0.94690 1.02300 1.01902 1.22010 0.95991 0.88620 1.00704 1.60367 1.07001 1.14304 1.50897 1.21653 0.88382 0.94642 0.96844 0.90784 1.22078 0.95993 1.02540 0.96797 1.22745 0.93691 0.86064 0.99314 1.87976 1.78002 1.39346 1.26494 1.23213 0.93335 1.03506 0.83766 1.23104 0.94207 0.87591 0.96236 0.89934 1.88051 1.83080 1.21388 1.36985 1.22490 0.99201 0.85115 0.93571 1.21393 1.00372 0.94039 0.98538 1.21343 1.00110 0.93593 0.97960 1.19028 0.94259 0.93534 0.94740 1.21761 1.41307 0.98222 0.96785 0.91861 1.26066 0.95229 1.02739 0.96213 1.70126 1.44389 1.30273 1.12832 0.85340 0.77885 0.78379 0.79075 1.18304 1.20316 1.20408 0.90776 0.93199 0.92842 0.94347 0.91063 0.83900 0.92818 0.90059 0.88243 0.91239 0.89813 0.88781 0.92285 0.92910 0.93293 0.92862 0.92380 0.92634 0.99433 0.99264 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.17 71.98 0.73 -1.43 16 2 C 0.06 0.82 6.21 86.30 0.54 1.36 16 3 N -0.69 -13.48 6.13 -490.95 -3.01 -16.49 16 4 C 0.09 1.70 2.36 45.04 0.11 1.81 16 5 H 0.07 1.00 7.80 -2.38 -0.02 0.99 16 6 C -0.14 -2.67 5.47 30.69 0.17 -2.50 16 7 C 0.06 1.05 6.84 72.02 0.49 1.54 16 8 O -0.40 -9.72 10.70 -141.82 -1.52 -11.23 16 9 C 0.04 0.75 6.50 72.01 0.47 1.22 16 10 C 0.05 0.96 2.29 30.68 0.07 1.03 16 11 H 0.08 1.35 7.79 -2.39 -0.02 1.34 16 12 O -0.38 -10.84 9.21 -141.82 -1.31 -12.14 16 13 C 0.07 2.09 5.75 71.98 0.41 2.50 16 14 C -0.11 -3.93 5.58 30.59 0.17 -3.76 16 15 C -0.09 -3.92 5.15 30.60 0.16 -3.76 16 16 C 0.02 1.19 4.97 29.85 0.15 1.34 16 17 C -0.54 -31.86 9.11 25.60 0.23 -31.63 16 18 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 19 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 20 N -0.94 -58.88 13.29 21.45 0.28 -58.60 16 21 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.04 0.47 8.06 -2.39 -0.02 0.45 16 29 H 0.07 1.04 7.54 -2.39 -0.02 1.02 16 30 H 0.34 6.61 8.36 -89.69 -0.75 5.86 16 31 H 0.05 1.47 7.83 -2.39 -0.02 1.45 16 32 H 0.08 1.32 7.57 -2.39 -0.02 1.30 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.83 7.84 -2.38 -0.02 1.82 16 37 H 0.06 1.50 8.09 -2.39 -0.02 1.48 16 38 H 0.05 1.40 7.84 -2.39 -0.02 1.38 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 40 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 43 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 44 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 45 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -70.42 358.54 0.82 -69.60 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.18 Total: 13.85 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: 4.16 Total: -32.14 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -2.72 Total: -75.09 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -2.82 Total: -23.38 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -70.42 0.82 -69.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686569024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.512 kcal (2) G-P(sol) polarization free energy of solvation -70.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds