Wall clock time and date at job start Mon Mar 30 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46893 * 109.47084 * 2 1 4 4 C 1.46904 * 110.99769 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.61360 * 325.21529 * 4 3 2 6 6 C 1.53172 * 109.54580 * 85.44209 * 4 3 2 7 7 C 1.53087 * 109.16624 * 176.84439 * 6 4 3 8 8 O 1.42903 * 109.41861 * 302.39513 * 7 6 4 9 9 C 1.42911 * 114.09900 * 61.15245 * 8 7 6 10 10 C 1.53098 * 109.41305 * 298.84709 * 9 8 7 11 11 H 1.08998 * 109.57185 * 177.54467 * 10 9 8 12 12 O 1.42906 * 109.52014 * 297.70220 * 10 9 8 13 13 C 1.42903 * 113.99632 * 269.68559 * 12 10 9 14 14 C 1.52997 * 109.47052 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47482 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99594 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99875 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47061 * 90.00257 * 21 19 17 23 23 H 1.48497 * 109.46906 * 209.99430 * 21 19 17 24 24 H 1.48498 * 109.47403 * 329.99876 * 21 19 17 25 25 H 1.08997 * 109.47563 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46796 * 300.00195 * 1 2 3 27 27 H 1.08998 * 109.47166 * 59.99795 * 1 2 3 28 28 H 1.08999 * 109.46755 * 239.99498 * 2 1 3 29 29 H 1.09005 * 109.46843 * 119.99993 * 2 1 3 30 30 H 1.00896 * 111.00518 * 56.04905 * 3 2 1 31 31 H 1.08997 * 109.52374 * 296.75512 * 6 4 3 32 32 H 1.09005 * 109.51966 * 56.94082 * 6 4 3 33 33 H 1.09000 * 109.47790 * 62.37423 * 7 6 4 34 34 H 1.08995 * 109.48667 * 182.39309 * 7 6 4 35 35 H 1.08998 * 109.48020 * 178.86064 * 9 8 7 36 36 H 1.09004 * 109.47751 * 58.82632 * 9 8 7 37 37 H 1.09002 * 109.47196 * 60.00179 * 13 12 10 38 38 H 1.09001 * 109.46951 * 300.00276 * 13 12 10 39 39 H 1.09002 * 109.47153 * 59.99934 * 14 13 12 40 40 H 1.09001 * 109.46832 * 300.00124 * 14 13 12 41 41 H 1.09002 * 109.47103 * 59.99753 * 15 14 13 42 42 H 1.08998 * 109.46862 * 300.00565 * 15 14 13 43 43 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 44 44 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 45 45 H 0.97002 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4882 1.4241 -0.0006 5 1 3.8767 0.5908 0.5848 6 6 4.0029 1.3233 -1.4397 7 6 5.5290 1.4441 -1.4373 8 8 5.9068 2.6807 -0.8289 9 6 5.4934 2.8113 0.5329 10 6 3.9657 2.7455 0.6095 11 1 3.6497 2.8011 1.6511 12 8 3.4035 3.8387 -0.1192 13 6 3.1910 5.0130 0.6668 14 6 2.5888 6.1121 -0.2109 15 6 2.3618 7.3696 0.6304 16 6 1.7603 8.4689 -0.2475 17 6 1.5361 9.7073 0.5814 18 1 1.7970 9.7102 1.6294 19 6 0.9989 10.8370 0.0016 20 7 0.8037 11.9179 0.7249 21 14 0.5483 10.8322 -1.8112 22 1 -0.8584 10.3836 -1.9705 23 1 0.6958 12.2035 -2.3616 24 1 1.4492 9.9056 -2.5428 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6443 1.9012 0.7813 31 1 3.7143 0.3613 -1.8633 32 1 3.5748 2.1284 -2.0369 33 1 5.9583 0.6157 -0.8737 34 1 5.8976 1.4156 -2.4626 35 1 5.8363 3.7681 0.9266 36 1 5.9222 2.0008 1.1222 37 1 4.1423 5.3541 1.0751 38 1 2.5060 4.7846 1.4834 39 1 1.6374 5.7708 -0.6189 40 1 3.2734 6.3406 -1.0277 41 1 3.3134 7.7107 1.0381 42 1 1.6775 7.1414 1.4475 43 1 0.8087 8.1280 -0.6555 44 1 2.4450 8.6969 -1.0643 45 1 0.4254 12.7126 0.3170 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686569025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:57 Heat of formation + Delta-G solvation = -113.458697 kcal Electronic energy + Delta-G solvation = -21385.741745 eV Core-core repulsion = 18209.495170 eV Total energy + Delta-G solvation = -3176.246575 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.11840 -37.27166 -36.64520 -34.64582 -32.71020 -32.18072 -30.73102 -29.20439 -28.64693 -24.95720 -24.10473 -23.74268 -22.07495 -21.46733 -20.38607 -19.83447 -16.84405 -16.71719 -16.53541 -16.47760 -15.89068 -15.56998 -14.90992 -14.84618 -14.54428 -14.14503 -13.79025 -13.54180 -13.43082 -12.91475 -12.64813 -12.37652 -12.17890 -11.97643 -11.83907 -11.76267 -11.41091 -11.38134 -11.31847 -10.84155 -10.80596 -10.59157 -10.55005 -10.05924 -9.84367 -9.64333 -9.51342 -9.16066 -9.11868 -8.66735 -8.48544 -5.99630 -3.97187 3.36084 3.43056 3.48771 3.49688 3.67173 3.93943 4.35904 4.50863 4.58998 4.63988 4.80409 4.88618 4.95462 4.99160 5.11458 5.16426 5.20321 5.26287 5.32558 5.35546 5.41720 5.51261 5.53387 5.58114 5.71066 5.75050 5.77369 5.92091 6.05643 6.07203 6.19761 6.41960 6.70064 6.75534 6.80349 6.93869 6.99873 7.11331 7.37074 7.39768 7.51225 7.85448 8.59239 9.05303 9.63534 11.13941 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.020448 B = 0.003406 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.010806 B = 8217.710184 C = 8862.062001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 N -0.674 5.674 4 C 0.092 3.908 5 H 0.051 0.949 6 C -0.140 4.140 7 C 0.060 3.940 8 O -0.368 6.368 9 C 0.042 3.958 10 C 0.053 3.947 11 H 0.065 0.935 12 O -0.353 6.353 13 C 0.061 3.939 14 C -0.116 4.116 15 C -0.099 4.099 16 C -0.014 4.014 17 C -0.520 4.520 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.024 0.976 30 H 0.343 0.657 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.012 0.988 44 H 0.016 0.984 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.601 -27.530 -0.660 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.075 4.075 3 N -0.307 5.307 4 C -0.018 4.018 5 H 0.069 0.931 6 C -0.178 4.178 7 C -0.017 4.017 8 O -0.286 6.286 9 C -0.035 4.035 10 C -0.006 4.006 11 H 0.083 0.917 12 O -0.272 6.272 13 C -0.015 4.015 14 C -0.154 4.154 15 C -0.137 4.137 16 C -0.051 4.051 17 C -0.558 4.558 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.545 5.545 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.189 1.189 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.162 0.838 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.030 0.970 44 H 0.034 0.966 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.527 -27.144 -1.643 27.966 hybrid contribution -0.241 -0.325 0.545 0.679 sum 6.285 -27.469 -1.098 28.200 Atomic orbital electron populations 1.21765 0.94753 1.01580 1.02775 1.21988 0.95949 0.89516 1.00089 1.60361 1.06597 1.13076 1.50623 1.21625 0.88489 0.94581 0.97056 0.93118 1.22138 0.95544 1.03310 0.96792 1.22608 0.94181 0.86245 0.98662 1.88004 1.77610 1.37736 1.25225 1.23078 0.93698 1.02542 0.84223 1.22856 0.93863 0.88358 0.95539 0.91733 1.88079 1.82493 1.20787 1.35839 1.22717 0.98753 0.85694 0.94318 1.21619 1.01007 0.93890 0.98864 1.21390 1.00556 0.93443 0.98304 1.19565 0.95520 0.94194 0.95839 1.21179 1.41519 0.95313 0.97761 0.91134 1.25045 0.95187 0.95428 0.97968 1.69923 1.45414 1.02951 1.36249 0.86760 0.79294 0.77197 0.85964 1.20305 1.21449 1.18892 0.92313 0.92762 0.91548 0.91123 0.95749 0.83761 0.91464 0.89066 0.93801 0.88665 0.88327 0.92721 0.93823 0.93805 0.91639 0.91680 0.92825 0.92872 0.97007 0.96553 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.17 37.16 0.38 -0.76 16 2 C 0.05 0.43 6.21 -3.82 -0.02 0.40 16 3 N -0.67 -6.68 6.13 -106.53 -0.65 -7.33 16 4 C 0.09 0.88 2.36 -67.53 -0.16 0.72 16 5 H 0.05 0.42 7.80 -51.93 -0.41 0.01 16 6 C -0.14 -1.38 5.47 -26.60 -0.15 -1.52 16 7 C 0.06 0.56 6.84 37.20 0.25 0.82 16 8 O -0.37 -4.51 10.70 -42.72 -0.46 -4.96 16 9 C 0.04 0.43 6.49 37.21 0.24 0.67 16 10 C 0.05 0.56 2.30 -26.59 -0.06 0.50 16 11 H 0.06 0.59 7.79 -51.93 -0.40 0.19 16 12 O -0.35 -4.95 9.21 -42.72 -0.39 -5.35 16 13 C 0.06 0.87 5.75 37.16 0.21 1.09 16 14 C -0.12 -1.99 5.58 -26.74 -0.15 -2.14 16 15 C -0.10 -2.00 5.15 -26.74 -0.14 -2.14 16 16 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 17 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 18 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 19 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 21 Si 0.88 22.36 27.47 -169.99 -4.67 17.69 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.55 7.54 -51.93 -0.39 0.16 16 29 H 0.02 0.18 8.06 -51.93 -0.42 -0.24 16 30 H 0.34 3.39 8.36 -39.29 -0.33 3.06 16 31 H 0.07 0.57 7.57 -51.93 -0.39 0.17 16 32 H 0.09 1.17 7.83 -51.93 -0.41 0.76 16 33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.00 7.86 -51.93 -0.41 0.59 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.04 0.59 7.86 -51.93 -0.41 0.18 16 38 H 0.04 0.57 8.09 -51.93 -0.42 0.15 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 44 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 45 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -32.41 354.97 -8.75 -41.15 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -8.56 Total: -2.26 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -0.13 Total: -16.53 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.12 Total: -35.09 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.85 Total: -10.31 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.69 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.41 -8.75 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686569025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.307 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds