Wall clock time and date at job start Mon Mar 30 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46898 * 109.47443 * 2 1 4 4 C 1.46898 * 110.99594 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.61964 * 325.21449 * 4 3 2 6 6 C 1.53186 * 109.59781 * 85.41735 * 4 3 2 7 7 C 1.53094 * 109.21272 * 176.77658 * 6 4 3 8 8 O 1.42900 * 109.41760 * 302.42529 * 7 6 4 9 9 C 1.42898 * 114.09809 * 61.15753 * 8 7 6 10 10 C 1.53091 * 109.41450 * 298.84226 * 9 8 7 11 11 H 1.08998 * 109.52311 * 297.64003 * 10 9 8 12 12 O 1.42907 * 109.52162 * 177.51586 * 10 9 8 13 13 C 1.42903 * 113.99838 * 90.12447 * 12 10 9 14 14 C 1.53000 * 109.46726 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.52992 * 109.47482 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47592 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99989 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46744 * 90.00434 * 21 19 17 23 23 H 1.48500 * 109.47304 * 210.00023 * 21 19 17 24 24 H 1.48498 * 109.47341 * 330.00626 * 21 19 17 25 25 H 1.08996 * 109.47895 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46935 * 300.00876 * 1 2 3 27 27 H 1.09000 * 109.46591 * 59.99567 * 1 2 3 28 28 H 1.08997 * 109.46967 * 239.99178 * 2 1 3 29 29 H 1.09002 * 109.46386 * 119.99944 * 2 1 3 30 30 H 1.00900 * 110.99845 * 303.94950 * 3 2 1 31 31 H 1.09004 * 109.46777 * 56.87303 * 6 4 3 32 32 H 1.08994 * 109.52037 * 296.71419 * 6 4 3 33 33 H 1.09000 * 109.47720 * 182.43546 * 7 6 4 34 34 H 1.09000 * 109.47768 * 62.40980 * 7 6 4 35 35 H 1.09003 * 109.48285 * 178.86273 * 9 8 7 36 36 H 1.08999 * 109.49386 * 58.83158 * 9 8 7 37 37 H 1.09001 * 109.46938 * 60.00058 * 13 12 10 38 38 H 1.08992 * 109.47388 * 300.00049 * 13 12 10 39 39 H 1.09002 * 109.47398 * 300.00244 * 14 13 12 40 40 H 1.09001 * 109.47194 * 60.00425 * 14 13 12 41 41 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 42 42 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 43 43 H 1.09002 * 109.47103 * 300.00247 * 16 15 14 44 44 H 1.09001 * 109.47066 * 60.00169 * 16 15 14 45 45 H 0.96996 * 119.99885 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4882 1.4239 0.0006 5 1 3.8762 0.5909 0.5866 6 6 4.0055 1.3221 -1.4377 7 6 5.5316 1.4445 -1.4340 8 8 5.9075 2.6819 -0.8261 9 6 5.4930 2.8129 0.5351 10 6 3.9654 2.7456 0.6106 11 1 3.5362 3.5792 0.0549 12 8 3.5511 2.8182 1.9764 13 6 3.3182 4.1487 2.4431 14 6 2.8814 4.1058 3.9088 15 6 2.6315 5.5302 4.4083 16 6 2.1953 5.4874 5.8741 17 6 1.9497 6.8904 6.3663 18 1 2.0902 7.7288 5.7001 19 6 1.5445 7.1038 7.6669 20 7 1.3729 6.0828 8.4780 21 14 1.2408 8.8429 8.2772 22 1 -0.1777 9.2109 8.0373 23 1 1.5318 8.9151 9.7316 24 1 2.1267 9.7854 7.5477 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.8933 -0.5140 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 1.6443 1.9012 -0.7814 31 1 3.5770 2.1264 -2.0357 32 1 3.7182 0.3596 -1.8607 33 1 5.9009 1.4160 -2.4592 34 1 5.9612 0.6168 -0.8696 35 1 5.8345 3.7703 0.9286 36 1 5.9221 2.0033 1.1255 37 1 2.5342 4.6118 1.8440 38 1 4.2353 4.7308 2.3538 39 1 1.9641 3.5237 3.9977 40 1 3.6652 3.6426 4.5081 41 1 3.5485 6.1126 4.3193 42 1 1.8475 5.9931 3.8090 43 1 1.2783 4.9049 5.9635 44 1 2.9796 5.0247 6.4732 45 1 1.0883 6.2330 9.3930 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686569027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:00 Heat of formation + Delta-G solvation = -119.880064 kcal Electronic energy + Delta-G solvation = -21135.418816 eV Core-core repulsion = 17958.893790 eV Total energy + Delta-G solvation = -3176.525026 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.09337 -37.44614 -36.69128 -34.54181 -32.75310 -32.23805 -30.52603 -28.99474 -28.26554 -24.85788 -24.16313 -23.38314 -22.27549 -21.61949 -20.68731 -19.90358 -17.08955 -16.68247 -16.18216 -16.11201 -15.94297 -15.41222 -15.04923 -14.83228 -14.41075 -14.32721 -13.86057 -13.53493 -13.17239 -13.03603 -12.46927 -12.21856 -12.12459 -11.95410 -11.75657 -11.62123 -11.57650 -11.25942 -11.18664 -11.05420 -10.72812 -10.56500 -10.46556 -10.30141 -10.12718 -9.60104 -9.26255 -9.17477 -8.99577 -8.56708 -8.29389 -5.94518 -3.96731 3.35315 3.38460 3.41284 3.44919 3.76533 3.89363 4.44600 4.49496 4.51598 4.66674 4.80568 4.86068 4.93051 5.01804 5.09184 5.17898 5.29798 5.34626 5.36483 5.40861 5.46321 5.47654 5.57601 5.60708 5.73787 5.79323 5.81765 5.87352 6.01048 6.19929 6.22625 6.56066 6.77694 6.80994 6.86502 7.00226 7.13073 7.18512 7.49151 7.74717 7.90454 8.06718 8.49028 9.10726 9.66910 11.16892 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.023153 B = 0.003039 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.058320 B = 9210.337502 C =10107.909090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 N -0.673 5.673 4 C 0.090 3.910 5 H 0.086 0.914 6 C -0.184 4.184 7 C 0.062 3.938 8 O -0.378 6.378 9 C 0.038 3.962 10 C 0.071 3.929 11 H 0.066 0.934 12 O -0.363 6.363 13 C 0.064 3.936 14 C -0.114 4.114 15 C -0.107 4.107 16 C 0.021 3.979 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.024 0.976 29 H 0.073 0.927 30 H 0.338 0.662 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.027 -12.986 -22.274 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.072 4.072 3 N -0.303 5.303 4 C -0.021 4.021 5 H 0.104 0.896 6 C -0.223 4.223 7 C -0.016 4.016 8 O -0.296 6.296 9 C -0.040 4.040 10 C 0.012 3.988 11 H 0.084 0.916 12 O -0.282 6.282 13 C -0.012 4.012 14 C -0.152 4.152 15 C -0.145 4.145 16 C -0.016 4.016 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.091 0.909 30 H 0.157 0.843 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.035 0.965 44 H 0.034 0.966 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.976 -12.988 -21.369 25.496 hybrid contribution -0.174 0.677 -0.523 0.873 sum 4.802 -12.311 -21.892 25.571 Atomic orbital electron populations 1.21770 0.94819 1.01667 1.02646 1.21935 0.95849 0.89250 1.00206 1.60438 1.06396 1.13686 1.49776 1.21696 0.88318 0.98113 0.93951 0.89579 1.22988 0.97908 1.03083 0.98324 1.22539 0.93346 0.86908 0.98765 1.87958 1.78066 1.37615 1.25989 1.23177 0.94531 1.03305 0.82950 1.22581 0.93467 0.97667 0.85117 0.91586 1.87972 1.87716 1.28112 1.24369 1.22724 0.98707 0.82968 0.96783 1.21608 1.01721 0.99665 0.92186 1.21571 1.00031 0.92894 1.00013 1.19086 0.96546 0.96899 0.89040 1.21285 1.45215 0.92944 0.96378 0.92739 1.25036 0.95678 0.96844 0.96997 1.69973 1.47420 1.29959 1.06192 0.86604 0.78512 0.85021 0.77916 1.20699 1.21255 1.19901 0.92264 0.91378 0.93010 0.95759 0.90856 0.84339 0.90629 0.90537 0.88686 0.92892 0.88270 0.92154 0.93557 0.94038 0.91618 0.91896 0.93434 0.93373 0.96541 0.96571 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.17 37.16 0.38 -0.86 16 2 C 0.06 0.50 6.21 -3.82 -0.02 0.47 16 3 N -0.67 -6.84 6.18 -106.53 -0.66 -7.50 16 4 C 0.09 0.89 2.23 -67.52 -0.15 0.74 16 5 H 0.09 0.91 7.80 -51.93 -0.41 0.50 16 6 C -0.18 -1.38 5.40 -26.59 -0.14 -1.52 16 7 C 0.06 0.48 6.84 37.21 0.25 0.74 16 8 O -0.38 -4.08 10.77 -35.23 -0.38 -4.45 16 9 C 0.04 0.41 6.46 37.20 0.24 0.66 16 10 C 0.07 0.84 2.45 -26.59 -0.07 0.77 16 11 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 12 O -0.36 -5.41 9.92 -35.23 -0.35 -5.76 16 13 C 0.06 0.99 5.75 37.16 0.21 1.20 16 14 C -0.11 -2.09 5.58 -26.73 -0.15 -2.24 16 15 C -0.11 -2.28 5.15 -26.74 -0.14 -2.42 16 16 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 17 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 18 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 21 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.02 0.18 7.54 -51.93 -0.39 -0.21 16 29 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 30 H 0.34 3.04 8.44 -39.29 -0.33 2.71 16 31 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.08 0.48 7.58 -51.93 -0.39 0.08 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 1.07 7.94 -51.93 -0.41 0.66 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 38 H 0.04 0.59 7.94 -51.93 -0.41 0.18 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -31.65 359.83 -9.01 -40.65 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -8.62 Total: -2.63 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -0.13 Total: -15.93 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.08 Total: -34.32 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.73 Total: -10.22 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.65 -9.01 -40.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686569027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.227 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds