Wall clock time and date at job start Mon Mar 30 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46898 * 109.47443 * 2 1 4 4 C 1.46898 * 110.99594 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.61964 * 325.21449 * 4 3 2 6 6 C 1.53186 * 109.59781 * 85.41735 * 4 3 2 7 7 C 1.53094 * 109.21272 * 176.77658 * 6 4 3 8 8 O 1.42900 * 109.41760 * 302.42529 * 7 6 4 9 9 C 1.42898 * 114.09809 * 61.15753 * 8 7 6 10 10 C 1.53091 * 109.41450 * 298.84226 * 9 8 7 11 11 H 1.08998 * 109.52311 * 297.64003 * 10 9 8 12 12 O 1.42907 * 109.52162 * 177.51586 * 10 9 8 13 13 C 1.42903 * 113.99838 * 90.12447 * 12 10 9 14 14 C 1.53000 * 109.46726 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.52992 * 109.47482 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47592 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99989 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46744 * 90.00434 * 21 19 17 23 23 H 1.48500 * 109.47304 * 210.00023 * 21 19 17 24 24 H 1.48498 * 109.47341 * 330.00626 * 21 19 17 25 25 H 1.08996 * 109.47895 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46935 * 300.00876 * 1 2 3 27 27 H 1.09000 * 109.46591 * 59.99567 * 1 2 3 28 28 H 1.08997 * 109.46967 * 239.99178 * 2 1 3 29 29 H 1.09002 * 109.46386 * 119.99944 * 2 1 3 30 30 H 1.00900 * 110.99845 * 303.94950 * 3 2 1 31 31 H 1.09004 * 109.46777 * 56.87303 * 6 4 3 32 32 H 1.08994 * 109.52037 * 296.71419 * 6 4 3 33 33 H 1.09000 * 109.47720 * 182.43546 * 7 6 4 34 34 H 1.09000 * 109.47768 * 62.40980 * 7 6 4 35 35 H 1.09003 * 109.48285 * 178.86273 * 9 8 7 36 36 H 1.08999 * 109.49386 * 58.83158 * 9 8 7 37 37 H 1.09001 * 109.46938 * 60.00058 * 13 12 10 38 38 H 1.08992 * 109.47388 * 300.00049 * 13 12 10 39 39 H 1.09002 * 109.47398 * 300.00244 * 14 13 12 40 40 H 1.09001 * 109.47194 * 60.00425 * 14 13 12 41 41 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 42 42 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 43 43 H 1.09002 * 109.47103 * 300.00247 * 16 15 14 44 44 H 1.09001 * 109.47066 * 60.00169 * 16 15 14 45 45 H 0.96996 * 119.99885 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4882 1.4239 0.0006 5 1 3.8762 0.5909 0.5866 6 6 4.0055 1.3221 -1.4377 7 6 5.5316 1.4445 -1.4340 8 8 5.9075 2.6819 -0.8261 9 6 5.4930 2.8129 0.5351 10 6 3.9654 2.7456 0.6106 11 1 3.5362 3.5792 0.0549 12 8 3.5511 2.8182 1.9764 13 6 3.3182 4.1487 2.4431 14 6 2.8814 4.1058 3.9088 15 6 2.6315 5.5302 4.4083 16 6 2.1953 5.4874 5.8741 17 6 1.9497 6.8904 6.3663 18 1 2.0902 7.7288 5.7001 19 6 1.5445 7.1038 7.6669 20 7 1.3729 6.0828 8.4780 21 14 1.2408 8.8429 8.2772 22 1 -0.1777 9.2109 8.0373 23 1 1.5318 8.9151 9.7316 24 1 2.1267 9.7854 7.5477 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.8933 -0.5140 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 1.6443 1.9012 -0.7814 31 1 3.5770 2.1264 -2.0357 32 1 3.7182 0.3596 -1.8607 33 1 5.9009 1.4160 -2.4592 34 1 5.9612 0.6168 -0.8696 35 1 5.8345 3.7703 0.9286 36 1 5.9221 2.0033 1.1255 37 1 2.5342 4.6118 1.8440 38 1 4.2353 4.7308 2.3538 39 1 1.9641 3.5237 3.9977 40 1 3.6652 3.6426 4.5081 41 1 3.5485 6.1126 4.3193 42 1 1.8475 5.9931 3.8090 43 1 1.2783 4.9049 5.9635 44 1 2.9796 5.0247 6.4732 45 1 1.0883 6.2330 9.3930 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686569027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:59 Heat of formation + Delta-G solvation = -141.009796 kcal Electronic energy + Delta-G solvation = -21136.335070 eV Core-core repulsion = 17958.893790 eV Total energy + Delta-G solvation = -3177.441280 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.91118 -38.52906 -37.47017 -36.33984 -34.36441 -33.35147 -31.51872 -30.23672 -29.48096 -26.63581 -24.99148 -24.23901 -23.34911 -22.88275 -21.92754 -21.25946 -18.43796 -17.98545 -17.55416 -17.06121 -16.71791 -16.50180 -16.45377 -15.99195 -15.71275 -15.15429 -14.88837 -14.64793 -14.35897 -14.13198 -14.05070 -13.58183 -13.29798 -12.98326 -12.77195 -12.73251 -12.69615 -12.54963 -12.34395 -12.29838 -12.19708 -12.07739 -11.89238 -11.48590 -11.33843 -11.30272 -11.07430 -11.00253 -10.54835 -10.17054 -9.29425 -8.19104 -6.30811 1.40489 1.42488 1.53671 2.40693 2.50383 2.97038 3.11603 3.13681 3.69841 3.79675 3.89668 4.02486 4.10759 4.12375 4.21655 4.25401 4.33945 4.38211 4.46710 4.50874 4.59712 4.62909 4.66515 4.70118 4.73365 4.80326 4.88426 4.94660 5.00350 5.08206 5.12512 5.19414 5.26456 5.31062 5.33201 5.54205 5.76619 5.86663 6.03495 6.05678 6.25450 6.37288 6.50411 6.86627 7.38519 8.93051 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.023153 B = 0.003039 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.058320 B = 9210.337502 C =10107.909090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 N -0.692 5.692 4 C 0.092 3.908 5 H 0.077 0.923 6 C -0.172 4.172 7 C 0.055 3.945 8 O -0.392 6.392 9 C 0.042 3.958 10 C 0.068 3.932 11 H 0.065 0.935 12 O -0.381 6.381 13 C 0.075 3.925 14 C -0.106 4.106 15 C -0.094 4.094 16 C 0.023 3.977 17 C -0.544 4.544 18 H 0.062 0.938 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.261 1.261 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.345 0.655 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.054 0.946 43 H -0.011 1.011 44 H -0.010 1.010 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.341 -12.437 -24.123 27.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.070 4.070 3 N -0.322 5.322 4 C -0.019 4.019 5 H 0.095 0.905 6 C -0.211 4.211 7 C -0.022 4.022 8 O -0.311 6.311 9 C -0.036 4.036 10 C 0.009 3.991 11 H 0.083 0.917 12 O -0.300 6.300 13 C -0.002 4.002 14 C -0.143 4.143 15 C -0.132 4.132 16 C -0.014 4.014 17 C -0.582 4.582 18 H 0.080 0.920 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.186 1.186 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.164 0.836 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.134 0.866 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.007 0.993 44 H 0.009 0.991 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.294 -12.447 -23.245 26.894 hybrid contribution -0.271 0.425 0.034 0.505 sum 5.023 -12.021 -23.211 26.618 Atomic orbital electron populations 1.21742 0.94498 1.02322 1.01988 1.21920 0.96062 0.88637 1.00416 1.60397 1.06662 1.14685 1.50503 1.21655 0.88359 0.96595 0.95256 0.90461 1.22891 0.97537 1.04187 0.96472 1.22783 0.93634 0.86023 0.99763 1.87942 1.78260 1.39203 1.25655 1.23072 0.93808 1.03250 0.83421 1.22780 0.94124 0.98787 0.83419 0.91705 1.87931 1.88069 1.27578 1.26405 1.22481 0.99471 0.83685 0.94519 1.21414 1.01022 0.97407 0.94506 1.21352 1.00406 0.95015 0.96397 1.19013 0.94483 0.95557 0.92388 1.21737 1.45423 0.94007 0.97061 0.91964 1.26045 0.95148 1.01727 0.97211 1.70115 1.48134 1.32641 1.06679 0.85405 0.78843 0.79176 0.77368 1.19717 1.20724 1.18557 0.90985 0.93528 0.92099 0.93845 0.92212 0.83635 0.90416 0.88671 0.86634 0.92200 0.88511 0.92175 0.92983 0.92626 0.92876 0.92557 0.92491 0.92707 0.99287 0.99136 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.17 71.98 0.73 -1.54 16 2 C 0.06 0.95 6.21 86.30 0.54 1.49 16 3 N -0.69 -13.33 6.18 -490.95 -3.04 -16.37 16 4 C 0.09 1.71 2.23 45.04 0.10 1.81 16 5 H 0.08 1.57 7.80 -2.39 -0.02 1.55 16 6 C -0.17 -2.17 5.40 30.69 0.17 -2.00 16 7 C 0.05 0.73 6.84 72.01 0.49 1.22 16 8 O -0.39 -7.81 10.77 -148.98 -1.60 -9.41 16 9 C 0.04 0.88 6.46 72.01 0.47 1.34 16 10 C 0.07 1.53 2.45 30.69 0.08 1.61 16 11 H 0.06 1.47 7.79 -2.39 -0.02 1.45 16 12 O -0.38 -11.18 9.92 -148.98 -1.48 -12.65 16 13 C 0.07 2.24 5.75 71.98 0.41 2.65 16 14 C -0.11 -3.91 5.58 30.59 0.17 -3.73 16 15 C -0.09 -4.00 5.15 30.59 0.16 -3.85 16 16 C 0.02 1.25 4.97 29.84 0.15 1.40 16 17 C -0.54 -31.94 9.11 25.60 0.23 -31.70 16 18 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 19 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 20 N -0.94 -58.57 13.29 21.45 0.28 -58.29 16 21 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.04 0.55 7.54 -2.39 -0.02 0.53 16 29 H 0.06 1.13 8.06 -2.39 -0.02 1.11 16 30 H 0.34 5.70 8.44 -89.69 -0.76 4.94 16 31 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 32 H 0.09 0.88 7.58 -2.39 -0.02 0.86 16 33 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.10 2.01 7.94 -2.39 -0.02 1.99 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 37 H 0.05 1.50 8.09 -2.39 -0.02 1.48 16 38 H 0.06 1.51 7.94 -2.39 -0.02 1.49 16 39 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 43 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 44 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 45 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -68.23 359.83 0.52 -67.72 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.17 Total: 12.96 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 4.15 Total: -31.08 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -2.75 Total: -74.66 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -3.08 Total: -22.06 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -68.23 0.52 -67.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686569027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.291 kcal (2) G-P(sol) polarization free energy of solvation -68.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds