Wall clock time and date at job start Mon Mar 30 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00045 * 2 1 4 4 H 1.08994 * 109.47599 * 330.00194 * 3 2 1 5 5 C 1.53004 * 109.46851 * 90.00032 * 3 2 1 6 6 C 1.52999 * 109.47324 * 60.00167 * 5 3 2 7 7 C 1.53007 * 109.46945 * 59.99859 * 6 5 3 8 8 C 1.52995 * 109.47218 * 300.00059 * 7 6 5 9 9 C 1.52999 * 109.47210 * 60.00104 * 8 7 6 10 10 H 1.08997 * 109.47133 * 59.99621 * 9 8 7 11 11 N 1.46904 * 109.47379 * 179.97438 * 9 8 7 12 12 C 1.46898 * 110.99738 * 306.16869 * 11 9 8 13 13 C 1.46895 * 111.00133 * 182.21301 * 11 9 8 14 14 C 1.53002 * 109.47198 * 190.00186 * 13 11 9 15 15 O 1.42903 * 109.46910 * 64.99930 * 14 13 11 16 16 C 1.42897 * 113.99573 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47070 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00063 * 0.02562 * 17 16 15 19 19 C 1.37886 * 120.00190 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99575 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00092 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46960 * 90.00289 * 21 19 17 23 23 H 1.48497 * 109.47255 * 210.00473 * 21 19 17 24 24 H 1.48505 * 109.47037 * 330.00592 * 21 19 17 25 25 H 1.09000 * 109.47266 * 300.00064 * 1 2 3 26 26 H 1.09000 * 109.47369 * 59.99894 * 1 2 3 27 27 H 1.09003 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47349 * 300.00092 * 5 3 2 29 29 H 1.09003 * 109.47148 * 179.97438 * 5 3 2 30 30 H 1.08997 * 109.47133 * 300.00301 * 6 5 3 31 31 H 1.08999 * 109.47444 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.46510 * 180.02562 * 7 6 5 33 33 H 1.08994 * 109.47305 * 60.00451 * 7 6 5 34 34 H 1.09007 * 109.47348 * 300.00065 * 8 7 6 35 35 H 1.08998 * 109.47342 * 180.02562 * 8 7 6 36 36 H 1.08998 * 109.47193 * 302.72615 * 12 11 9 37 37 H 1.08999 * 109.47422 * 62.72766 * 12 11 9 38 38 H 1.09010 * 109.46648 * 182.72451 * 12 11 9 39 39 H 1.08999 * 109.46877 * 69.99923 * 13 11 9 40 40 H 1.09005 * 109.46925 * 309.99998 * 13 11 9 41 41 H 1.09001 * 109.47212 * 305.00261 * 14 13 11 42 42 H 1.08996 * 109.46934 * 185.00113 * 14 13 11 43 43 H 1.09004 * 109.47397 * 300.00139 * 16 15 14 44 44 H 1.09001 * 109.47575 * 60.00323 * 16 15 14 45 45 H 0.97003 * 119.99446 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2176 1.7713 1.4426 6 6 3.1514 0.7973 2.1638 7 6 4.5001 0.7551 1.4425 8 6 4.2927 0.2893 0.0000 9 6 3.3589 1.2633 -0.7212 10 1 3.8022 2.2591 -0.7211 11 7 3.1602 0.8163 -2.1064 12 6 4.4476 0.6236 -2.7871 13 6 2.3092 1.7576 -2.8464 14 6 1.9206 1.1437 -4.1929 15 8 1.1062 -0.0098 -3.9731 16 6 0.6868 -0.6623 -5.1733 17 6 -0.1608 -1.8586 -4.8248 18 1 -0.3597 -2.0966 -3.7903 19 6 -0.6833 -2.6488 -5.8267 20 7 -0.4415 -2.3586 -7.0865 21 14 -1.7345 -4.1312 -5.3947 22 1 -3.1595 -3.7213 -5.3155 23 1 -1.5763 -5.1723 -6.4418 24 1 -1.3032 -4.6786 -4.0833 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.2568 1.8013 1.9564 29 1 2.6614 2.7669 1.4426 30 1 2.7081 -0.1985 2.1637 31 1 3.2996 1.1294 3.1913 32 1 5.1652 0.0609 1.9561 33 1 4.9435 1.7508 1.4426 34 1 3.8494 -0.7066 0.0000 35 1 5.2536 0.2588 -0.5137 36 1 5.0175 1.5522 -2.7565 37 1 5.0096 -0.1642 -2.2854 38 1 4.2711 0.3396 -3.8246 39 1 2.8550 2.6861 -3.0143 40 1 1.4087 1.9650 -2.2682 41 1 2.8216 0.8546 -4.7340 42 1 1.3640 1.8753 -4.7786 43 1 0.1047 0.0317 -5.7798 44 1 1.5624 -0.9889 -5.7343 45 1 -0.8087 -2.9148 -7.7913 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687464060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:58 Heat of formation + Delta-G solvation = -95.524644 kcal Electronic energy + Delta-G solvation = -22522.379794 eV Core-core repulsion = 19346.910898 eV Total energy + Delta-G solvation = -3175.468896 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.79462 -37.18955 -36.06922 -35.15884 -32.62283 -30.64612 -29.86829 -28.51770 -26.83392 -26.11843 -25.19862 -22.50039 -22.16918 -21.75633 -20.35954 -19.47770 -16.70646 -16.28927 -15.93524 -15.67931 -15.24264 -15.08744 -14.74925 -14.31061 -14.01825 -13.74044 -13.58153 -13.45463 -13.18138 -12.78705 -12.45879 -12.17473 -12.09358 -11.85764 -11.57471 -11.31781 -11.21486 -11.09649 -11.06585 -10.77448 -10.72802 -10.58699 -10.44832 -10.24153 -9.87896 -9.79907 -9.14963 -8.99083 -8.69960 -8.04277 -7.90050 -6.02900 -4.03039 3.35279 3.40126 3.46649 3.97617 4.10310 4.42414 4.66598 4.81954 4.90015 4.98978 5.15997 5.21772 5.33468 5.33794 5.39722 5.43008 5.48217 5.56681 5.58663 5.65880 5.74508 5.76870 5.81534 5.85017 5.89207 6.00567 6.05472 6.11538 6.15765 6.16510 6.23399 6.25238 6.28512 6.40068 6.54504 7.19906 7.36488 7.37539 7.53315 7.60246 7.89737 8.26652 8.72784 9.12489 9.61470 11.08965 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.004723 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.339204 B = 5926.499386 C = 6554.106342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.097 3.903 4 H 0.058 0.942 5 C -0.141 4.141 6 C -0.114 4.114 7 C -0.116 4.116 8 C -0.111 4.111 9 C 0.092 3.908 10 H 0.041 0.959 11 N -0.513 5.513 12 C 0.022 3.978 13 C 0.058 3.942 14 C 0.067 3.933 15 O -0.375 6.375 16 C 0.194 3.806 17 C -0.506 4.506 18 H 0.067 0.933 19 C 0.055 3.945 20 N -0.902 5.902 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.271 1.271 25 H 0.026 0.974 26 H 0.046 0.954 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.015 0.985 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.034 0.966 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.000 1.000 44 H 0.002 0.998 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.559 10.229 15.705 20.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.039 3.961 4 H 0.075 0.925 5 C -0.179 4.179 6 C -0.151 4.151 7 C -0.154 4.154 8 C -0.149 4.149 9 C -0.016 4.016 10 H 0.059 0.941 11 N -0.237 5.237 12 C -0.126 4.126 13 C -0.070 4.070 14 C -0.011 4.011 15 O -0.294 6.294 16 C 0.120 3.880 17 C -0.544 4.544 18 H 0.085 0.915 19 C -0.146 4.146 20 N -0.541 5.541 21 Si 0.733 3.267 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.196 1.196 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.095 0.905 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.018 0.982 44 H 0.020 0.980 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.335 9.465 15.706 20.143 hybrid contribution -0.323 0.427 -0.374 0.653 sum 8.012 9.892 15.332 19.928 Atomic orbital electron populations 1.22718 0.81573 1.02803 0.99027 1.87997 1.18897 1.25668 1.94634 1.22052 0.94188 0.86146 0.93759 0.92456 1.22046 1.00111 0.99111 0.96657 1.21421 0.95305 1.00560 0.97821 1.21512 0.97128 1.00796 0.95933 1.21571 0.98388 1.00725 0.94200 1.21687 0.94569 0.96461 0.88909 0.94121 1.61802 1.14227 1.47211 1.00412 1.22473 0.90221 0.99491 1.00378 1.22198 0.97082 0.92201 0.95511 1.22242 0.94478 0.89918 0.94431 1.87977 1.67924 1.40125 1.33373 1.20155 0.93766 0.91716 0.82395 1.21062 1.30078 1.09504 0.93777 0.91522 1.24940 0.96769 0.98166 0.94711 1.69972 1.45632 1.39548 0.98991 0.86372 0.80296 0.81826 0.78225 1.20593 1.21184 1.19575 0.95507 0.93561 0.89776 0.91810 0.91633 0.90920 0.92643 0.91962 0.92660 0.89803 0.92135 0.96617 0.91163 0.90882 0.94783 0.90453 0.94551 0.94639 0.98228 0.98048 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.82 101.05 1.09 1.61 16 2 O -0.35 -5.69 8.86 -35.23 -0.31 -6.00 16 3 C 0.10 1.29 2.10 -26.73 -0.06 1.24 16 4 H 0.06 0.77 5.90 -51.93 -0.31 0.46 16 5 C -0.14 -1.49 5.63 -26.73 -0.15 -1.64 16 6 C -0.11 -1.16 5.78 -26.73 -0.15 -1.32 16 7 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 8 C -0.11 -1.36 4.62 -26.73 -0.12 -1.48 16 9 C 0.09 1.22 1.73 -67.71 -0.12 1.11 16 10 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 11 N -0.51 -8.17 4.45 -234.88 -1.04 -9.22 16 12 C 0.02 0.32 8.80 60.06 0.53 0.84 16 13 C 0.06 0.92 5.18 -3.83 -0.02 0.90 16 14 C 0.07 1.30 6.00 37.16 0.22 1.53 16 15 O -0.37 -9.35 10.27 -35.23 -0.36 -9.71 16 16 C 0.19 5.49 5.69 36.01 0.20 5.69 16 17 C -0.51 -15.26 9.43 -34.44 -0.32 -15.59 16 18 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 21 Si 0.91 22.34 29.54 -169.99 -5.02 17.31 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 H 0.03 0.32 7.87 -51.93 -0.41 -0.09 16 26 H 0.05 0.73 8.09 -51.93 -0.42 0.31 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 1.23 7.68 -51.93 -0.40 0.84 16 35 H 0.06 0.69 6.39 -51.93 -0.33 0.36 16 36 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.07 0.94 6.38 -51.93 -0.33 0.61 16 38 H 0.07 1.13 6.11 -51.92 -0.32 0.81 16 39 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 40 H 0.08 1.24 5.91 -51.93 -0.31 0.94 16 41 H 0.04 0.69 6.22 -51.93 -0.32 0.37 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 44 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -32.43 346.64 -8.08 -40.51 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -8.15 Total: -4.41 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 0.85 Total: -6.90 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.31 Total: -36.02 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.67 Total: -15.71 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.43 -8.08 -40.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687464060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.016 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds