Wall clock time and date at job start Mon Mar 30 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00045 * 2 1 4 4 H 1.08994 * 109.47599 * 330.00194 * 3 2 1 5 5 C 1.53004 * 109.46851 * 90.00032 * 3 2 1 6 6 C 1.52999 * 109.47324 * 60.00167 * 5 3 2 7 7 C 1.53007 * 109.46945 * 59.99859 * 6 5 3 8 8 C 1.52995 * 109.47218 * 300.00059 * 7 6 5 9 9 C 1.52999 * 109.47210 * 60.00104 * 8 7 6 10 10 H 1.08997 * 109.47133 * 59.99621 * 9 8 7 11 11 N 1.46904 * 109.47379 * 179.97438 * 9 8 7 12 12 C 1.46898 * 110.99738 * 306.16869 * 11 9 8 13 13 C 1.46895 * 111.00133 * 182.21301 * 11 9 8 14 14 C 1.53002 * 109.47198 * 190.00186 * 13 11 9 15 15 O 1.42903 * 109.46910 * 64.99930 * 14 13 11 16 16 C 1.42897 * 113.99573 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47070 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00063 * 0.02562 * 17 16 15 19 19 C 1.37886 * 120.00190 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99575 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00092 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46960 * 90.00289 * 21 19 17 23 23 H 1.48497 * 109.47255 * 210.00473 * 21 19 17 24 24 H 1.48505 * 109.47037 * 330.00592 * 21 19 17 25 25 H 1.09000 * 109.47266 * 300.00064 * 1 2 3 26 26 H 1.09000 * 109.47369 * 59.99894 * 1 2 3 27 27 H 1.09003 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47349 * 300.00092 * 5 3 2 29 29 H 1.09003 * 109.47148 * 179.97438 * 5 3 2 30 30 H 1.08997 * 109.47133 * 300.00301 * 6 5 3 31 31 H 1.08999 * 109.47444 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.46510 * 180.02562 * 7 6 5 33 33 H 1.08994 * 109.47305 * 60.00451 * 7 6 5 34 34 H 1.09007 * 109.47348 * 300.00065 * 8 7 6 35 35 H 1.08998 * 109.47342 * 180.02562 * 8 7 6 36 36 H 1.08998 * 109.47193 * 302.72615 * 12 11 9 37 37 H 1.08999 * 109.47422 * 62.72766 * 12 11 9 38 38 H 1.09010 * 109.46648 * 182.72451 * 12 11 9 39 39 H 1.08999 * 109.46877 * 69.99923 * 13 11 9 40 40 H 1.09005 * 109.46925 * 309.99998 * 13 11 9 41 41 H 1.09001 * 109.47212 * 305.00261 * 14 13 11 42 42 H 1.08996 * 109.46934 * 185.00113 * 14 13 11 43 43 H 1.09004 * 109.47397 * 300.00139 * 16 15 14 44 44 H 1.09001 * 109.47575 * 60.00323 * 16 15 14 45 45 H 0.97003 * 119.99446 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2176 1.7713 1.4426 6 6 3.1514 0.7973 2.1638 7 6 4.5001 0.7551 1.4425 8 6 4.2927 0.2893 0.0000 9 6 3.3589 1.2633 -0.7212 10 1 3.8022 2.2591 -0.7211 11 7 3.1602 0.8163 -2.1064 12 6 4.4476 0.6236 -2.7871 13 6 2.3092 1.7576 -2.8464 14 6 1.9206 1.1437 -4.1929 15 8 1.1062 -0.0098 -3.9731 16 6 0.6868 -0.6623 -5.1733 17 6 -0.1608 -1.8586 -4.8248 18 1 -0.3597 -2.0966 -3.7903 19 6 -0.6833 -2.6488 -5.8267 20 7 -0.4415 -2.3586 -7.0865 21 14 -1.7345 -4.1312 -5.3947 22 1 -3.1595 -3.7213 -5.3155 23 1 -1.5763 -5.1723 -6.4418 24 1 -1.3032 -4.6786 -4.0833 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.2568 1.8013 1.9564 29 1 2.6614 2.7669 1.4426 30 1 2.7081 -0.1985 2.1637 31 1 3.2996 1.1294 3.1913 32 1 5.1652 0.0609 1.9561 33 1 4.9435 1.7508 1.4426 34 1 3.8494 -0.7066 0.0000 35 1 5.2536 0.2588 -0.5137 36 1 5.0175 1.5522 -2.7565 37 1 5.0096 -0.1642 -2.2854 38 1 4.2711 0.3396 -3.8246 39 1 2.8550 2.6861 -3.0143 40 1 1.4087 1.9650 -2.2682 41 1 2.8216 0.8546 -4.7340 42 1 1.3640 1.8753 -4.7786 43 1 0.1047 0.0317 -5.7798 44 1 1.5624 -0.9889 -5.7343 45 1 -0.8087 -2.9148 -7.7913 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687464060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:58 Heat of formation + Delta-G solvation = -117.552241 kcal Electronic energy + Delta-G solvation = -22523.334983 eV Core-core repulsion = 19346.910898 eV Total energy + Delta-G solvation = -3176.424084 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.83997 -38.76324 -37.47652 -36.30760 -34.85586 -31.79899 -30.95262 -29.86420 -28.79338 -27.29938 -26.43662 -24.46705 -23.47216 -22.82940 -21.53185 -20.45937 -18.60015 -17.81664 -17.44212 -17.01958 -16.58399 -16.38697 -16.25610 -15.85942 -15.48328 -14.96353 -14.92340 -14.66445 -14.29021 -14.18731 -13.61833 -13.54573 -13.38867 -13.14413 -12.98775 -12.79114 -12.75480 -12.59061 -12.32583 -12.25918 -12.11446 -12.07625 -11.69387 -11.42475 -11.34304 -11.20782 -10.86045 -10.74175 -10.22768 -10.13678 -9.03984 -8.30441 -6.41655 1.39055 1.42193 1.54589 2.35918 2.87373 3.03187 3.03988 3.26711 3.73161 3.91094 4.02680 4.14489 4.22897 4.25616 4.34640 4.40281 4.45062 4.48217 4.50874 4.56152 4.59445 4.63595 4.67615 4.71779 4.81471 4.86453 4.93799 4.94851 4.99151 5.01775 5.11990 5.20640 5.26620 5.30434 5.35399 5.38513 5.57513 5.62220 5.99915 6.19785 6.26939 6.52237 6.59780 6.89593 7.30501 8.82144 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.004723 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.339204 B = 5926.499386 C = 6554.106342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.381 6.381 3 C 0.090 3.910 4 H 0.052 0.948 5 C -0.135 4.135 6 C -0.113 4.113 7 C -0.110 4.110 8 C -0.107 4.107 9 C 0.092 3.908 10 H 0.063 0.937 11 N -0.545 5.545 12 C 0.026 3.974 13 C 0.068 3.932 14 C 0.057 3.943 15 O -0.389 6.389 16 C 0.211 3.789 17 C -0.540 4.540 18 H 0.058 0.942 19 C 0.007 3.993 20 N -0.932 5.932 21 Si 0.981 3.019 22 H -0.266 1.266 23 H -0.274 1.274 24 H -0.267 1.267 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.044 0.956 43 H -0.018 1.018 44 H -0.021 1.021 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.991 10.947 17.377 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.299 6.299 3 C 0.032 3.968 4 H 0.070 0.930 5 C -0.173 4.173 6 C -0.150 4.150 7 C -0.148 4.148 8 C -0.145 4.145 9 C -0.016 4.016 10 H 0.080 0.920 11 N -0.270 5.270 12 C -0.122 4.122 13 C -0.060 4.060 14 C -0.020 4.020 15 O -0.309 6.309 16 C 0.135 3.865 17 C -0.578 4.578 18 H 0.076 0.924 19 C -0.191 4.191 20 N -0.572 5.572 21 Si 0.803 3.197 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.191 1.191 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.000 1.000 44 H -0.003 1.003 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.783 10.209 17.386 21.991 hybrid contribution -0.394 0.267 -0.919 1.035 sum 8.389 10.475 16.467 21.243 Atomic orbital electron populations 1.22680 0.81370 1.02425 0.99389 1.87961 1.19346 1.27733 1.94895 1.22271 0.93944 0.84876 0.95714 0.92967 1.22016 1.00710 1.00031 0.94537 1.21414 0.95190 0.99376 0.99030 1.21495 0.97263 1.01963 0.94095 1.21525 0.98134 0.98830 0.96007 1.21792 0.94923 0.97584 0.87271 0.91960 1.61733 1.15161 1.48150 1.01914 1.22420 0.89958 1.00852 0.98983 1.22077 0.97562 0.93031 0.93311 1.22597 0.93784 0.88294 0.97317 1.87940 1.68955 1.42112 1.31874 1.19758 0.92352 0.91298 0.83059 1.21341 1.31685 1.11030 0.93748 0.92386 1.25932 0.97639 1.01221 0.94337 1.70076 1.46169 1.40852 1.00088 0.85223 0.78601 0.77570 0.78272 1.19096 1.19847 1.19113 0.92646 0.95571 0.90624 0.91389 0.89512 0.93128 0.90550 0.91078 0.90754 0.93116 0.91363 0.94056 0.90835 0.92972 0.91436 0.90864 0.94369 0.93818 1.00022 1.00338 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.13 10.82 113.37 1.23 2.36 16 2 O -0.38 -12.36 8.86 -148.98 -1.32 -13.68 16 3 C 0.09 2.29 2.10 30.60 0.06 2.35 16 4 H 0.05 1.36 5.90 -2.39 -0.01 1.34 16 5 C -0.13 -2.51 5.63 30.60 0.17 -2.33 16 6 C -0.11 -2.04 5.78 30.60 0.18 -1.87 16 7 C -0.11 -1.90 5.92 30.59 0.18 -1.72 16 8 C -0.11 -2.48 4.62 30.59 0.14 -2.34 16 9 C 0.09 2.29 1.73 44.92 0.08 2.37 16 10 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 11 N -0.54 -17.04 4.45 -897.04 -3.99 -21.03 16 12 C 0.03 0.70 8.80 127.69 1.12 1.83 16 13 C 0.07 2.10 5.18 86.30 0.45 2.55 16 14 C 0.06 2.26 6.00 71.98 0.43 2.69 16 15 O -0.39 -20.17 10.27 -148.98 -1.53 -21.70 16 16 C 0.21 12.41 5.69 71.24 0.41 12.82 16 17 C -0.54 -33.54 9.43 25.60 0.24 -33.30 16 18 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 19 C 0.01 0.40 5.46 84.66 0.46 0.87 16 20 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 21 Si 0.98 45.87 29.54 68.60 2.03 47.89 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 25 H 0.06 1.29 7.87 -2.39 -0.02 1.27 16 26 H 0.03 0.85 8.09 -2.39 -0.02 0.83 16 27 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.07 1.21 7.87 -2.39 -0.02 1.19 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.15 7.68 -2.39 -0.02 1.13 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 1.51 7.68 -2.38 -0.02 1.49 16 35 H 0.07 1.44 6.39 -2.39 -0.02 1.42 16 36 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 1.93 6.38 -2.39 -0.02 1.91 16 38 H 0.05 1.62 6.11 -2.38 -0.01 1.61 16 39 H 0.07 1.65 8.12 -2.39 -0.02 1.63 16 40 H 0.07 2.33 5.91 -2.38 -0.01 2.31 16 41 H 0.04 1.48 6.22 -2.39 -0.01 1.47 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 44 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 45 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -71.30 346.64 1.56 -69.75 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.93 Total: 9.81 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 5.15 Total: -13.74 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -3.70 Total: -78.33 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -2.85 Total: -35.38 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -71.30 1.56 -69.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687464060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.806 kcal (2) G-P(sol) polarization free energy of solvation -71.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds