Wall clock time and date at job start Mon Mar 30 2020 05:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99763 * 2 1 4 4 H 1.09001 * 109.47090 * 29.99822 * 3 2 1 5 5 C 1.53006 * 109.47205 * 270.00211 * 3 2 1 6 6 C 1.52994 * 109.47137 * 299.99698 * 5 3 2 7 7 C 1.53007 * 109.47460 * 300.00474 * 6 5 3 8 8 C 1.52997 * 109.47158 * 59.99588 * 7 6 5 9 9 C 1.53003 * 109.47401 * 150.00067 * 3 2 1 10 10 H 1.08998 * 109.47074 * 179.97438 * 9 3 2 11 11 N 1.46898 * 109.46868 * 300.00133 * 9 3 2 12 12 C 1.46903 * 110.99826 * 174.43450 * 11 9 3 13 13 C 1.46901 * 111.00402 * 298.39265 * 11 9 3 14 14 C 1.52993 * 109.47278 * 162.71642 * 13 11 9 15 15 O 1.42904 * 109.47190 * 66.97028 * 14 13 11 16 16 C 1.42894 * 114.00150 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47343 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99795 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00471 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99827 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00218 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46911 * 59.99864 * 21 19 17 23 23 H 1.48497 * 109.46998 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47094 * 300.00068 * 21 19 17 25 25 H 1.08998 * 109.47386 * 60.00225 * 1 2 3 26 26 H 1.09006 * 109.46936 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47280 * 299.99414 * 1 2 3 28 28 H 1.09000 * 109.46870 * 59.99852 * 5 3 2 29 29 H 1.08996 * 109.46996 * 180.02562 * 5 3 2 30 30 H 1.09007 * 109.46730 * 59.99825 * 6 5 3 31 31 H 1.08995 * 109.47305 * 179.97438 * 6 5 3 32 32 H 1.08991 * 109.47181 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.46220 * 300.00000 * 7 6 5 34 34 H 1.08997 * 109.46956 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.47036 * 60.00319 * 8 7 6 36 36 H 1.09004 * 109.46808 * 66.17790 * 12 11 9 37 37 H 1.09003 * 109.47235 * 186.16777 * 12 11 9 38 38 H 1.08992 * 109.47137 * 306.17241 * 12 11 9 39 39 H 1.09000 * 109.46665 * 282.72086 * 13 11 9 40 40 H 1.09001 * 109.46662 * 42.71719 * 13 11 9 41 41 H 1.08998 * 109.47189 * 186.96734 * 14 13 11 42 42 H 1.08999 * 109.47602 * 306.97109 * 14 13 11 43 43 H 1.09000 * 109.47587 * 300.00102 * 16 15 14 44 44 H 1.09002 * 109.47365 * 60.00116 * 16 15 14 45 45 H 0.97001 * 120.00062 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2175 1.7715 -1.4425 6 6 3.1514 0.7976 -2.1638 7 6 4.5001 0.7553 -1.4425 8 6 4.2927 0.2894 -0.0001 9 6 3.3589 1.2634 0.7212 10 1 3.8023 2.2591 0.7208 11 7 3.1597 0.8161 2.1062 12 6 4.4466 0.6366 2.7916 13 6 2.2968 1.7498 2.8422 14 6 1.7627 1.0655 4.1020 15 8 2.8428 0.8199 5.0050 16 6 2.4498 0.1806 6.2210 17 6 3.6610 -0.0279 7.0932 18 1 4.6337 0.2951 6.7526 19 6 3.5276 -0.6320 8.3254 20 7 2.3433 -1.0258 8.7398 21 14 5.0291 -0.8911 9.4061 22 1 5.6487 0.4226 9.7156 23 1 4.6206 -1.5553 10.6698 24 1 6.0113 -1.7457 8.6920 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.2567 1.8015 -1.9563 29 1 2.6612 2.7670 -1.4425 30 1 2.7080 -0.1983 -2.1638 31 1 3.2988 1.1293 -3.1915 32 1 5.1652 0.0612 -1.9561 33 1 4.9433 1.7512 -1.4425 34 1 5.2534 0.2598 0.5138 35 1 3.8494 -0.7063 -0.0001 36 1 4.9375 1.6036 2.9016 37 1 4.2761 0.2017 3.7765 38 1 5.0807 -0.0284 2.2055 39 1 2.8726 2.6314 3.1238 40 1 1.4614 2.0484 2.2090 41 1 1.0275 1.7112 4.5822 42 1 1.2937 0.1197 3.8308 43 1 1.7290 0.8082 6.7451 44 1 1.9948 -0.7836 5.9941 45 1 2.2493 -1.4504 9.6069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687464061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:02 Heat of formation + Delta-G solvation = -97.122898 kcal Electronic energy + Delta-G solvation = -22254.672339 eV Core-core repulsion = 19079.134138 eV Total energy + Delta-G solvation = -3175.538202 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.88868 -37.29636 -36.19881 -35.13224 -32.67471 -30.72566 -29.87077 -28.57525 -26.95265 -26.39225 -24.86686 -22.60481 -22.25574 -21.71171 -20.46426 -19.57404 -16.79754 -16.34188 -16.07413 -15.79575 -15.38245 -15.05193 -14.79060 -14.48206 -13.98922 -13.82327 -13.68128 -13.41242 -13.28958 -12.69344 -12.50258 -12.31106 -12.13745 -11.67652 -11.40899 -11.40355 -11.36751 -11.20777 -11.07123 -10.79418 -10.74485 -10.60891 -10.50567 -10.38528 -9.90712 -9.82163 -9.39437 -9.05404 -8.73723 -8.10196 -7.88520 -6.07397 -4.09012 3.34086 3.36792 3.40503 3.80687 4.10634 4.37618 4.57945 4.72115 4.83195 4.99312 5.10387 5.20087 5.21053 5.29053 5.31516 5.32981 5.39533 5.43442 5.52638 5.61008 5.68260 5.73289 5.76131 5.79233 5.92451 6.00922 6.06779 6.11576 6.12924 6.15935 6.18777 6.27851 6.43220 6.50441 6.94621 7.18209 7.27551 7.43432 7.49674 7.54438 7.82186 8.20167 8.63408 9.04359 9.55706 11.04137 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.030675 B = 0.003843 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.579059 B = 7284.881259 C = 7804.681165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.358 6.358 3 C 0.096 3.904 4 H 0.058 0.942 5 C -0.141 4.141 6 C -0.113 4.113 7 C -0.117 4.117 8 C -0.111 4.111 9 C 0.088 3.912 10 H 0.043 0.957 11 N -0.522 5.522 12 C 0.016 3.984 13 C 0.057 3.943 14 C 0.069 3.931 15 O -0.391 6.391 16 C 0.195 3.805 17 C -0.514 4.514 18 H 0.065 0.935 19 C 0.057 3.943 20 N -0.899 5.899 21 Si 0.907 3.093 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.032 0.968 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.015 0.985 37 H 0.109 0.891 38 H 0.059 0.941 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.046 0.954 43 H 0.002 0.998 44 H 0.005 0.995 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.276 5.408 -21.284 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.037 3.963 4 H 0.076 0.924 5 C -0.179 4.179 6 C -0.150 4.150 7 C -0.155 4.155 8 C -0.149 4.149 9 C -0.021 4.021 10 H 0.061 0.939 11 N -0.246 5.246 12 C -0.131 4.131 13 C -0.071 4.071 14 C -0.009 4.009 15 O -0.311 6.311 16 C 0.121 3.879 17 C -0.552 4.552 18 H 0.083 0.917 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.734 3.266 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.200 1.200 25 H 0.050 0.950 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.034 0.966 37 H 0.127 0.873 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.020 0.980 44 H 0.023 0.977 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.300 4.742 -21.159 21.723 hybrid contribution 0.471 0.867 0.764 1.248 sum -0.829 5.609 -20.395 21.168 Atomic orbital electron populations 1.22736 0.82089 1.02492 0.99224 1.88004 1.18448 1.26431 1.94725 1.22159 0.94488 0.85429 0.94179 0.92379 1.22033 1.00088 0.99387 0.96382 1.21416 0.95396 1.00318 0.97909 1.21526 0.97013 1.00995 0.95963 1.21582 0.98819 1.00356 0.94129 1.21703 0.94042 0.96922 0.89448 0.93877 1.61976 1.15524 1.46843 1.00217 1.22750 0.89008 0.99558 1.01760 1.22218 0.96729 0.93798 0.94332 1.22222 0.90572 0.98509 0.89572 1.87815 1.31887 1.81034 1.30392 1.20163 0.96370 0.91274 0.80115 1.21015 0.94306 1.38952 1.00914 0.91706 1.24938 0.96490 0.95410 0.97617 1.69954 1.22481 1.40763 1.20595 0.86419 0.82409 0.78474 0.79300 1.20103 1.21202 1.19994 0.94951 0.89886 0.94194 0.91895 0.91405 0.91081 0.92584 0.91915 0.92527 0.91705 0.90097 0.96626 0.87328 0.92245 0.94431 0.90959 0.94548 0.93533 0.98001 0.97671 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.82 101.05 1.09 1.42 16 2 O -0.36 -4.67 8.86 -35.23 -0.31 -4.98 16 3 C 0.10 1.11 2.11 -26.73 -0.06 1.06 16 4 H 0.06 0.66 5.76 -51.93 -0.30 0.36 16 5 C -0.14 -1.32 5.63 -26.73 -0.15 -1.47 16 6 C -0.11 -1.05 5.78 -26.73 -0.15 -1.20 16 7 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 8 C -0.11 -1.35 4.66 -26.73 -0.12 -1.47 16 9 C 0.09 1.14 1.73 -67.71 -0.12 1.02 16 10 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 11 N -0.52 -8.35 4.44 -234.89 -1.04 -9.40 16 12 C 0.02 0.28 8.79 60.07 0.53 0.81 16 13 C 0.06 0.91 5.40 -3.83 -0.02 0.89 16 14 C 0.07 1.34 6.23 37.15 0.23 1.57 16 15 O -0.39 -9.38 7.40 -35.23 -0.26 -9.64 16 16 C 0.20 5.40 5.69 36.01 0.20 5.60 16 17 C -0.51 -15.16 9.43 -34.44 -0.32 -15.48 16 18 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 21 Si 0.91 21.99 29.54 -169.99 -5.02 16.97 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H 0.03 0.28 7.87 -51.93 -0.41 -0.13 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 28 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.74 7.68 -51.93 -0.40 0.34 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.79 6.20 -51.93 -0.32 0.47 16 35 H 0.08 1.12 7.68 -51.93 -0.40 0.72 16 36 H 0.02 0.25 8.06 -51.93 -0.42 -0.16 16 37 H 0.11 2.27 5.54 -51.93 -0.29 1.98 16 38 H 0.06 0.91 5.86 -51.93 -0.30 0.61 16 39 H 0.04 0.61 7.97 -51.93 -0.41 0.20 16 40 H 0.07 0.98 5.67 -51.93 -0.29 0.69 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 44 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 344.28 15.07 5.19 5.19 Total: -1.00 -31.13 344.28 -8.01 -39.13 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -8.15 Total: -3.84 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 0.85 Total: -7.00 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.31 Total: -35.82 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.57 Total: -14.62 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.13 -8.01 -39.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687464061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.991 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds