Wall clock time and date at job start Mon Mar 30 2020 05:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99763 * 2 1 4 4 H 1.09001 * 109.47090 * 29.99822 * 3 2 1 5 5 C 1.53006 * 109.47205 * 270.00211 * 3 2 1 6 6 C 1.52994 * 109.47137 * 299.99698 * 5 3 2 7 7 C 1.53007 * 109.47460 * 300.00474 * 6 5 3 8 8 C 1.52997 * 109.47158 * 59.99588 * 7 6 5 9 9 C 1.53003 * 109.47401 * 150.00067 * 3 2 1 10 10 H 1.08998 * 109.47074 * 179.97438 * 9 3 2 11 11 N 1.46898 * 109.46868 * 300.00133 * 9 3 2 12 12 C 1.46903 * 110.99826 * 174.43450 * 11 9 3 13 13 C 1.46901 * 111.00402 * 298.39265 * 11 9 3 14 14 C 1.52993 * 109.47278 * 162.71642 * 13 11 9 15 15 O 1.42904 * 109.47190 * 66.97028 * 14 13 11 16 16 C 1.42894 * 114.00150 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47343 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99795 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00471 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99827 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00218 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46911 * 59.99864 * 21 19 17 23 23 H 1.48497 * 109.46998 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47094 * 300.00068 * 21 19 17 25 25 H 1.08998 * 109.47386 * 60.00225 * 1 2 3 26 26 H 1.09006 * 109.46936 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47280 * 299.99414 * 1 2 3 28 28 H 1.09000 * 109.46870 * 59.99852 * 5 3 2 29 29 H 1.08996 * 109.46996 * 180.02562 * 5 3 2 30 30 H 1.09007 * 109.46730 * 59.99825 * 6 5 3 31 31 H 1.08995 * 109.47305 * 179.97438 * 6 5 3 32 32 H 1.08991 * 109.47181 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.46220 * 300.00000 * 7 6 5 34 34 H 1.08997 * 109.46956 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.47036 * 60.00319 * 8 7 6 36 36 H 1.09004 * 109.46808 * 66.17790 * 12 11 9 37 37 H 1.09003 * 109.47235 * 186.16777 * 12 11 9 38 38 H 1.08992 * 109.47137 * 306.17241 * 12 11 9 39 39 H 1.09000 * 109.46665 * 282.72086 * 13 11 9 40 40 H 1.09001 * 109.46662 * 42.71719 * 13 11 9 41 41 H 1.08998 * 109.47189 * 186.96734 * 14 13 11 42 42 H 1.08999 * 109.47602 * 306.97109 * 14 13 11 43 43 H 1.09000 * 109.47587 * 300.00102 * 16 15 14 44 44 H 1.09002 * 109.47365 * 60.00116 * 16 15 14 45 45 H 0.97001 * 120.00062 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2175 1.7715 -1.4425 6 6 3.1514 0.7976 -2.1638 7 6 4.5001 0.7553 -1.4425 8 6 4.2927 0.2894 -0.0001 9 6 3.3589 1.2634 0.7212 10 1 3.8023 2.2591 0.7208 11 7 3.1597 0.8161 2.1062 12 6 4.4466 0.6366 2.7916 13 6 2.2968 1.7498 2.8422 14 6 1.7627 1.0655 4.1020 15 8 2.8428 0.8199 5.0050 16 6 2.4498 0.1806 6.2210 17 6 3.6610 -0.0279 7.0932 18 1 4.6337 0.2951 6.7526 19 6 3.5276 -0.6320 8.3254 20 7 2.3433 -1.0258 8.7398 21 14 5.0291 -0.8911 9.4061 22 1 5.6487 0.4226 9.7156 23 1 4.6206 -1.5553 10.6698 24 1 6.0113 -1.7457 8.6920 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.2567 1.8015 -1.9563 29 1 2.6612 2.7670 -1.4425 30 1 2.7080 -0.1983 -2.1638 31 1 3.2988 1.1293 -3.1915 32 1 5.1652 0.0612 -1.9561 33 1 4.9433 1.7512 -1.4425 34 1 5.2534 0.2598 0.5138 35 1 3.8494 -0.7063 -0.0001 36 1 4.9375 1.6036 2.9016 37 1 4.2761 0.2017 3.7765 38 1 5.0807 -0.0284 2.2055 39 1 2.8726 2.6314 3.1238 40 1 1.4614 2.0484 2.2090 41 1 1.0275 1.7112 4.5822 42 1 1.2937 0.1197 3.8308 43 1 1.7290 0.8082 6.7451 44 1 1.9948 -0.7836 5.9941 45 1 2.2493 -1.4504 9.6069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687464061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:01 Heat of formation + Delta-G solvation = -117.434526 kcal Electronic energy + Delta-G solvation = -22255.553117 eV Core-core repulsion = 19079.134138 eV Total energy + Delta-G solvation = -3176.418980 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.87554 -38.86441 -37.43361 -36.27610 -34.86450 -31.84638 -30.93357 -29.87621 -28.96592 -27.25786 -26.19277 -24.44137 -23.62010 -22.78739 -21.63868 -20.48591 -18.62233 -17.88876 -17.35282 -17.13611 -16.67188 -16.34966 -16.25684 -15.87183 -15.44495 -15.02701 -14.88066 -14.69939 -14.24543 -14.18476 -13.57271 -13.48933 -13.32958 -13.29263 -12.95081 -12.85870 -12.68564 -12.55293 -12.37150 -12.23785 -12.15345 -12.06433 -11.68613 -11.45588 -11.35179 -11.24602 -10.85006 -10.74054 -10.27249 -10.14136 -9.15752 -8.30983 -6.43316 1.39728 1.44687 1.52927 2.34981 2.86657 3.00602 3.02871 3.22464 3.70902 3.89747 3.96536 4.14710 4.22661 4.29087 4.35216 4.41160 4.47887 4.48645 4.53446 4.57952 4.61063 4.65780 4.69117 4.75812 4.84335 4.87258 4.91740 4.94053 4.98859 5.03667 5.19583 5.25968 5.29243 5.31948 5.35127 5.48522 5.55415 5.60456 5.97660 6.13759 6.26619 6.47933 6.55267 6.83568 7.28545 8.81336 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.030675 B = 0.003843 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.579059 B = 7284.881259 C = 7804.681165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.383 6.383 3 C 0.094 3.906 4 H 0.062 0.938 5 C -0.136 4.136 6 C -0.111 4.111 7 C -0.112 4.112 8 C -0.108 4.108 9 C 0.086 3.914 10 H 0.053 0.947 11 N -0.537 5.537 12 C 0.026 3.974 13 C 0.067 3.933 14 C 0.062 3.938 15 O -0.396 6.396 16 C 0.210 3.790 17 C -0.545 4.545 18 H 0.063 0.937 19 C 0.006 3.994 20 N -0.932 5.932 21 Si 0.982 3.018 22 H -0.265 1.265 23 H -0.276 1.276 24 H -0.265 1.265 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.018 0.982 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.102 0.898 41 H 0.046 0.954 42 H 0.037 0.963 43 H -0.017 1.017 44 H -0.020 1.020 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 6.390 -22.643 23.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.302 6.302 3 C 0.036 3.964 4 H 0.079 0.921 5 C -0.174 4.174 6 C -0.148 4.148 7 C -0.150 4.150 8 C -0.146 4.146 9 C -0.022 4.022 10 H 0.071 0.929 11 N -0.261 5.261 12 C -0.122 4.122 13 C -0.061 4.061 14 C -0.015 4.015 15 O -0.316 6.316 16 C 0.135 3.865 17 C -0.583 4.583 18 H 0.081 0.919 19 C -0.192 4.192 20 N -0.571 5.571 21 Si 0.805 3.195 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.190 1.190 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.120 0.880 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.001 0.999 44 H -0.002 1.002 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.494 5.734 -22.548 23.271 hybrid contribution 0.140 0.550 1.115 1.252 sum -0.354 6.285 -21.433 22.338 Atomic orbital electron populations 1.22841 0.80959 1.03013 1.00028 1.87975 1.19806 1.27430 1.94956 1.22239 0.93496 0.85057 0.95653 0.92052 1.22013 1.00882 0.99859 0.94616 1.21402 0.94879 0.99654 0.98907 1.21505 0.97670 1.01714 0.94130 1.21537 0.98061 0.99102 0.95881 1.21832 0.95513 0.97380 0.87487 0.92933 1.61928 1.14894 1.47518 1.01742 1.22538 0.90011 0.99667 1.00002 1.22151 0.97764 0.93084 0.93084 1.22514 0.90051 0.98685 0.90292 1.87831 1.33646 1.80521 1.29606 1.19768 0.95429 0.89887 0.81412 1.21346 0.94645 1.40193 1.02098 0.91919 1.25964 1.00064 0.94363 0.98853 1.70072 1.24860 1.40896 1.21285 0.85246 0.78082 0.78930 0.77226 1.18957 1.20059 1.19021 0.92877 0.89664 0.94556 0.90740 0.90020 0.92542 0.90667 0.91109 0.91360 0.92186 0.92318 0.96323 0.91439 0.90923 0.94458 0.87993 0.93549 0.94481 0.99924 1.00203 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.82 113.37 1.23 1.77 16 2 O -0.38 -9.59 8.86 -148.98 -1.32 -10.91 16 3 C 0.09 1.99 2.11 30.60 0.06 2.06 16 4 H 0.06 1.24 5.76 -2.39 -0.01 1.23 16 5 C -0.14 -2.14 5.63 30.59 0.17 -1.96 16 6 C -0.11 -1.78 5.78 30.59 0.18 -1.60 16 7 C -0.11 -1.92 5.92 30.60 0.18 -1.74 16 8 C -0.11 -2.50 4.66 30.59 0.14 -2.36 16 9 C 0.09 2.11 1.73 44.92 0.08 2.18 16 10 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 11 N -0.54 -17.04 4.44 -897.05 -3.99 -21.02 16 12 C 0.03 0.88 8.79 127.69 1.12 2.01 16 13 C 0.07 2.10 5.40 86.30 0.47 2.56 16 14 C 0.06 2.44 6.23 71.98 0.45 2.89 16 15 O -0.40 -19.69 7.40 -148.98 -1.10 -20.79 16 16 C 0.21 12.14 5.69 71.24 0.41 12.55 16 17 C -0.55 -32.98 9.43 25.60 0.24 -32.74 16 18 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 19 C 0.01 0.35 5.46 84.65 0.46 0.81 16 20 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 21 Si 0.98 45.00 29.54 68.60 2.03 47.03 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H 0.05 0.80 7.87 -2.39 -0.02 0.78 16 26 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.04 0.72 8.09 -2.39 -0.02 0.70 16 28 H 0.07 1.03 7.87 -2.39 -0.02 1.01 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.08 7.68 -2.38 -0.02 1.06 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.41 6.20 -2.39 -0.01 1.40 16 35 H 0.06 1.62 7.68 -2.39 -0.02 1.60 16 36 H 0.02 0.61 8.06 -2.39 -0.02 0.59 16 37 H 0.07 2.93 5.54 -2.39 -0.01 2.92 16 38 H 0.07 2.26 5.86 -2.39 -0.01 2.25 16 39 H 0.04 1.18 7.97 -2.39 -0.02 1.16 16 40 H 0.10 2.59 5.67 -2.39 -0.01 2.57 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 44 H -0.02 -1.22 8.14 -2.39 -0.02 -1.23 16 45 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -68.08 344.28 2.02 -66.06 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.93 Total: 10.05 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 5.19 Total: -13.58 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -3.70 Total: -77.85 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -2.42 Total: -31.70 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -68.08 2.02 -66.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687464061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.377 kcal (2) G-P(sol) polarization free energy of solvation -68.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds