Wall clock time and date at job start Mon Mar 30 2020 05:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00370 * 2 1 4 4 H 1.08999 * 109.46794 * 33.89009 * 3 2 1 5 5 C 1.53001 * 109.46937 * 273.89483 * 3 2 1 6 6 N 1.46899 * 109.47212 * 174.51100 * 5 3 2 7 7 C 1.46898 * 111.00075 * 288.58084 * 6 5 3 8 8 C 1.46894 * 110.99920 * 164.62913 * 6 5 3 9 9 C 1.53003 * 109.47108 * 190.00399 * 8 6 5 10 10 O 1.42900 * 109.47290 * 64.99520 * 9 8 6 11 11 C 1.42897 * 114.00068 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47260 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99972 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00354 * 180.02562 * 12 11 10 15 15 N 1.31523 * 119.99720 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00443 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46944 * 59.99763 * 16 14 12 18 18 H 1.48500 * 109.47325 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47076 * 299.99901 * 16 14 12 20 20 C 1.52995 * 109.47532 * 153.89049 * 3 2 1 21 21 C 1.53784 * 113.61152 * 39.14035 * 20 3 2 22 22 C 1.53960 * 87.01609 * 220.04674 * 21 20 3 23 23 C 1.53778 * 113.61328 * 301.53193 * 20 3 2 24 24 H 1.09004 * 109.47334 * 295.13309 * 1 2 3 25 25 H 1.09003 * 109.47229 * 175.13302 * 1 2 3 26 26 H 1.08997 * 109.46916 * 55.13049 * 1 2 3 27 27 H 1.08997 * 109.47254 * 294.51379 * 5 3 2 28 28 H 1.09007 * 109.47245 * 54.51263 * 5 3 2 29 29 H 1.09009 * 109.46797 * 63.76035 * 7 6 5 30 30 H 1.08996 * 109.47387 * 183.75360 * 7 6 5 31 31 H 1.08998 * 109.47579 * 303.75993 * 7 6 5 32 32 H 1.09002 * 109.47107 * 309.99786 * 8 6 5 33 33 H 1.08996 * 109.47537 * 70.00033 * 8 6 5 34 34 H 1.08999 * 109.47443 * 184.99629 * 9 8 6 35 35 H 1.09004 * 109.46974 * 304.99792 * 9 8 6 36 36 H 1.08997 * 109.47303 * 300.00703 * 11 10 9 37 37 H 1.09002 * 109.47012 * 60.00386 * 11 10 9 38 38 H 0.97002 * 119.99763 * 180.02562 * 15 14 12 39 39 H 1.08997 * 112.84929 * 170.33156 * 20 3 2 40 40 H 1.09001 * 113.61348 * 334.56210 * 21 20 3 41 41 H 1.08994 * 113.61435 * 105.46845 * 21 20 3 42 42 H 1.08998 * 113.53743 * 270.80777 * 22 21 20 43 43 H 1.09001 * 113.74242 * 139.94302 * 22 21 20 44 44 H 1.09001 * 113.60959 * 254.52177 * 23 20 3 45 45 H 1.08999 * 113.61709 * 25.43301 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3788 1.9843 0.5730 5 6 2.1283 1.8112 -1.4392 6 7 2.6025 3.2015 -1.4324 7 6 1.5571 4.1120 -0.9467 8 6 3.0735 3.6035 -2.7644 9 6 3.7841 4.9551 -2.6676 10 8 4.9650 4.8166 -1.8749 11 6 5.7067 6.0282 -1.7205 12 6 6.9247 5.7670 -0.8723 13 1 7.1137 4.7749 -0.4898 14 6 7.7977 6.7947 -0.5846 15 7 7.5678 8.0028 -1.0508 16 14 9.3078 6.4708 0.4662 17 1 10.1605 5.4498 -0.1941 18 1 10.0785 7.7299 0.6268 19 1 8.8853 5.9749 1.8006 20 6 3.4010 1.2445 0.6348 21 6 4.1983 -0.0136 0.2520 22 6 4.6805 -0.0547 1.7136 23 6 3.3970 0.7106 2.0769 24 1 -0.3634 0.4365 0.9304 25 1 -0.3634 -1.0240 -0.0872 26 1 -0.3633 0.5875 -0.8431 27 1 2.8361 1.1885 -1.9863 28 1 1.1524 1.7625 -1.9226 29 1 1.3234 3.8759 0.0916 30 1 1.9109 5.1407 -1.0146 31 1 0.6612 3.9949 -1.5564 32 1 3.7676 2.8546 -3.1457 33 1 2.2227 3.6880 -3.4405 34 1 4.0553 5.2954 -3.6670 35 1 3.1185 5.6831 -2.2039 36 1 6.0176 6.3914 -2.7000 37 1 5.0808 6.7782 -1.2368 38 1 8.1823 8.7257 -0.8486 39 1 3.9625 2.1709 0.5136 40 1 3.5707 -0.8608 -0.0247 41 1 4.9955 0.1765 -0.4665 42 1 5.5930 0.5156 1.8871 43 1 4.7232 -1.0597 2.1335 44 1 3.5485 1.4846 2.8294 45 1 2.5501 0.0618 2.3000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692230484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:48 Heat of formation + Delta-G solvation = -71.359033 kcal Electronic energy + Delta-G solvation = -21938.260931 eV Core-core repulsion = 18763.839935 eV Total energy + Delta-G solvation = -3174.420997 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.65894 -37.63733 -36.86051 -35.85697 -32.67281 -30.76610 -28.75969 -27.03351 -26.81041 -25.91884 -25.25940 -23.97691 -22.24255 -21.19371 -20.46350 -19.01746 -16.77479 -16.35707 -16.18443 -15.72928 -15.57534 -15.29773 -14.95899 -14.54934 -14.12835 -13.94451 -13.83782 -13.31298 -12.97225 -12.83188 -12.24371 -12.14525 -12.04034 -11.79094 -11.65748 -11.57763 -11.38734 -11.19404 -11.01772 -10.79833 -10.69368 -10.39162 -10.27093 -10.11856 -9.98010 -9.79947 -9.48241 -9.04332 -8.73794 -8.10903 -8.03931 -6.05541 -4.06331 3.36183 3.38424 3.42780 3.57792 4.22113 4.40011 4.65901 4.87512 4.92648 4.94307 5.06933 5.11654 5.18826 5.22066 5.30979 5.32102 5.37949 5.47054 5.48180 5.50816 5.69314 5.71843 5.84318 5.89122 5.97210 6.01091 6.03971 6.07124 6.10974 6.17610 6.23335 6.28988 6.33892 6.51330 6.84730 7.09136 7.15535 7.24651 7.32137 7.49439 7.86139 8.22775 8.67932 9.08240 9.58360 11.06148 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017720 B = 0.004676 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.718843 B = 5987.017955 C = 7172.705178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.104 3.896 4 H 0.059 0.941 5 C 0.037 3.963 6 N -0.520 5.520 7 C 0.020 3.980 8 C 0.062 3.938 9 C 0.066 3.934 10 O -0.379 6.379 11 C 0.195 3.805 12 C -0.509 4.509 13 H 0.066 0.934 14 C 0.056 3.944 15 N -0.901 5.901 16 Si 0.906 3.094 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.098 4.098 21 C -0.130 4.130 22 C -0.142 4.142 23 C -0.137 4.137 24 H 0.038 0.962 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.027 0.973 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.018 0.982 32 H 0.081 0.919 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.001 0.999 37 H 0.002 0.998 38 H 0.263 0.737 39 H 0.121 0.879 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.596 -13.868 1.138 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.046 3.954 4 H 0.077 0.923 5 C -0.091 4.091 6 N -0.245 5.245 7 C -0.128 4.128 8 C -0.065 4.065 9 C -0.012 4.012 10 O -0.298 6.298 11 C 0.120 3.880 12 C -0.548 4.548 13 H 0.084 0.916 14 C -0.145 4.145 15 N -0.541 5.541 16 Si 0.734 3.266 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.116 4.116 21 C -0.167 4.167 22 C -0.179 4.179 23 C -0.174 4.174 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.036 0.964 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.139 0.861 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.948 -14.006 1.548 19.827 hybrid contribution -0.284 0.552 -0.241 0.666 sum -14.233 -13.453 1.307 19.628 Atomic orbital electron populations 1.22738 0.81921 1.02247 0.99729 1.87902 1.18808 1.28168 1.94937 1.21909 0.95297 0.83311 0.94834 0.92290 1.22550 0.98667 0.90365 0.97532 1.61731 1.36056 1.00973 1.25741 1.22508 0.92091 0.98320 0.99903 1.22152 0.97573 0.98255 0.88546 1.22271 0.89247 0.94923 0.94752 1.87944 1.35268 1.35904 1.70700 1.20161 0.90414 0.81850 0.95565 1.21022 1.06308 0.96275 1.31163 0.91566 1.24939 0.98417 0.94774 0.96389 1.69962 1.37760 1.00710 1.45636 0.86420 0.82115 0.77389 0.80700 1.20039 1.21251 1.20007 1.22684 0.93907 1.00125 0.94867 1.22822 0.99276 0.98251 0.96346 1.22792 0.97826 1.00029 0.97261 1.22905 0.98145 0.99653 0.96739 0.94301 0.89991 0.94392 0.90094 0.95446 0.91632 0.90580 0.96369 0.90082 0.94519 0.94372 0.94544 0.98098 0.97995 0.92719 0.86062 0.89759 0.91747 0.90232 0.92160 0.91954 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.80 101.05 1.09 1.36 16 2 O -0.38 -4.49 8.46 -35.23 -0.30 -4.79 16 3 C 0.10 1.30 2.20 -26.73 -0.06 1.24 16 4 H 0.06 0.72 6.35 -51.93 -0.33 0.39 16 5 C 0.04 0.48 4.63 -3.82 -0.02 0.46 16 6 N -0.52 -7.71 4.13 -242.92 -1.00 -8.72 16 7 C 0.02 0.26 9.21 60.06 0.55 0.82 16 8 C 0.06 0.94 5.34 -3.83 -0.02 0.92 16 9 C 0.07 1.23 6.01 37.16 0.22 1.45 16 10 O -0.38 -9.21 10.27 -35.23 -0.36 -9.57 16 11 C 0.19 5.40 5.69 36.00 0.20 5.61 16 12 C -0.51 -15.17 9.43 -34.44 -0.32 -15.49 16 13 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 16 Si 0.91 22.12 29.54 -169.99 -5.02 17.10 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.10 -1.34 3.48 -89.81 -0.31 -1.65 16 21 C -0.13 -1.71 7.43 -25.82 -0.19 -1.90 16 22 C -0.14 -1.77 8.09 -25.82 -0.21 -1.97 16 23 C -0.14 -1.71 7.54 -25.92 -0.20 -1.91 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.31 7.41 -51.93 -0.38 -0.07 16 27 H 0.08 1.09 7.76 -51.93 -0.40 0.69 16 28 H 0.03 0.33 7.27 -51.92 -0.38 -0.05 16 29 H 0.06 0.81 6.73 -51.92 -0.35 0.46 16 30 H 0.08 1.09 6.07 -51.93 -0.32 0.78 16 31 H 0.02 0.21 8.04 -51.93 -0.42 -0.21 16 32 H 0.08 1.25 7.87 -51.93 -0.41 0.84 16 33 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.66 6.20 -51.93 -0.32 0.34 16 36 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 37 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.12 2.01 7.74 -51.93 -0.40 1.61 16 40 H 0.08 1.09 7.03 -51.93 -0.36 0.73 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 0.93 7.72 -51.93 -0.40 0.53 16 LS Contribution 356.03 15.07 5.37 5.37 Total: -1.00 -31.27 356.03 -8.19 -39.45 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -8.25 Total: -2.78 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 0.64 Total: -9.54 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: -0.27 Total: -35.23 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.66 Total: -14.36 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.27 -8.19 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692230484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.906 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds