Wall clock time and date at job start Mon Mar 30 2020 05:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00370 * 2 1 4 4 H 1.08999 * 109.46794 * 33.89009 * 3 2 1 5 5 C 1.53001 * 109.46937 * 273.89483 * 3 2 1 6 6 N 1.46899 * 109.47212 * 174.51100 * 5 3 2 7 7 C 1.46898 * 111.00075 * 288.58084 * 6 5 3 8 8 C 1.46894 * 110.99920 * 164.62913 * 6 5 3 9 9 C 1.53003 * 109.47108 * 190.00399 * 8 6 5 10 10 O 1.42900 * 109.47290 * 64.99520 * 9 8 6 11 11 C 1.42897 * 114.00068 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47260 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99972 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00354 * 180.02562 * 12 11 10 15 15 N 1.31523 * 119.99720 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00443 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46944 * 59.99763 * 16 14 12 18 18 H 1.48500 * 109.47325 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47076 * 299.99901 * 16 14 12 20 20 C 1.52995 * 109.47532 * 153.89049 * 3 2 1 21 21 C 1.53784 * 113.61152 * 39.14035 * 20 3 2 22 22 C 1.53960 * 87.01609 * 220.04674 * 21 20 3 23 23 C 1.53778 * 113.61328 * 301.53193 * 20 3 2 24 24 H 1.09004 * 109.47334 * 295.13309 * 1 2 3 25 25 H 1.09003 * 109.47229 * 175.13302 * 1 2 3 26 26 H 1.08997 * 109.46916 * 55.13049 * 1 2 3 27 27 H 1.08997 * 109.47254 * 294.51379 * 5 3 2 28 28 H 1.09007 * 109.47245 * 54.51263 * 5 3 2 29 29 H 1.09009 * 109.46797 * 63.76035 * 7 6 5 30 30 H 1.08996 * 109.47387 * 183.75360 * 7 6 5 31 31 H 1.08998 * 109.47579 * 303.75993 * 7 6 5 32 32 H 1.09002 * 109.47107 * 309.99786 * 8 6 5 33 33 H 1.08996 * 109.47537 * 70.00033 * 8 6 5 34 34 H 1.08999 * 109.47443 * 184.99629 * 9 8 6 35 35 H 1.09004 * 109.46974 * 304.99792 * 9 8 6 36 36 H 1.08997 * 109.47303 * 300.00703 * 11 10 9 37 37 H 1.09002 * 109.47012 * 60.00386 * 11 10 9 38 38 H 0.97002 * 119.99763 * 180.02562 * 15 14 12 39 39 H 1.08997 * 112.84929 * 170.33156 * 20 3 2 40 40 H 1.09001 * 113.61348 * 334.56210 * 21 20 3 41 41 H 1.08994 * 113.61435 * 105.46845 * 21 20 3 42 42 H 1.08998 * 113.53743 * 270.80777 * 22 21 20 43 43 H 1.09001 * 113.74242 * 139.94302 * 22 21 20 44 44 H 1.09001 * 113.60959 * 254.52177 * 23 20 3 45 45 H 1.08999 * 113.61709 * 25.43301 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3788 1.9843 0.5730 5 6 2.1283 1.8112 -1.4392 6 7 2.6025 3.2015 -1.4324 7 6 1.5571 4.1120 -0.9467 8 6 3.0735 3.6035 -2.7644 9 6 3.7841 4.9551 -2.6676 10 8 4.9650 4.8166 -1.8749 11 6 5.7067 6.0282 -1.7205 12 6 6.9247 5.7670 -0.8723 13 1 7.1137 4.7749 -0.4898 14 6 7.7977 6.7947 -0.5846 15 7 7.5678 8.0028 -1.0508 16 14 9.3078 6.4708 0.4662 17 1 10.1605 5.4498 -0.1941 18 1 10.0785 7.7299 0.6268 19 1 8.8853 5.9749 1.8006 20 6 3.4010 1.2445 0.6348 21 6 4.1983 -0.0136 0.2520 22 6 4.6805 -0.0547 1.7136 23 6 3.3970 0.7106 2.0769 24 1 -0.3634 0.4365 0.9304 25 1 -0.3634 -1.0240 -0.0872 26 1 -0.3633 0.5875 -0.8431 27 1 2.8361 1.1885 -1.9863 28 1 1.1524 1.7625 -1.9226 29 1 1.3234 3.8759 0.0916 30 1 1.9109 5.1407 -1.0146 31 1 0.6612 3.9949 -1.5564 32 1 3.7676 2.8546 -3.1457 33 1 2.2227 3.6880 -3.4405 34 1 4.0553 5.2954 -3.6670 35 1 3.1185 5.6831 -2.2039 36 1 6.0176 6.3914 -2.7000 37 1 5.0808 6.7782 -1.2368 38 1 8.1823 8.7257 -0.8486 39 1 3.9625 2.1709 0.5136 40 1 3.5707 -0.8608 -0.0247 41 1 4.9955 0.1765 -0.4665 42 1 5.5930 0.5156 1.8871 43 1 4.7232 -1.0597 2.1335 44 1 3.5485 1.4846 2.8294 45 1 2.5501 0.0618 2.3000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692230484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:47 Heat of formation + Delta-G solvation = -91.288177 kcal Electronic energy + Delta-G solvation = -21939.125124 eV Core-core repulsion = 18763.839935 eV Total energy + Delta-G solvation = -3175.285189 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.66621 -39.04859 -37.90779 -37.34661 -34.87786 -31.99702 -30.13105 -28.81693 -27.88834 -26.89461 -26.30793 -25.17157 -24.42698 -22.39180 -21.59128 -20.05927 -18.59314 -17.79933 -17.45997 -17.13791 -16.80952 -16.46610 -16.40585 -15.94648 -15.47738 -15.35591 -15.18771 -14.54281 -14.24955 -13.91904 -13.62327 -13.50043 -13.27779 -13.15218 -12.99282 -12.78351 -12.71496 -12.59978 -12.52325 -12.26756 -12.18044 -12.02639 -11.72595 -11.31672 -11.23469 -11.12697 -10.82621 -10.81174 -10.44010 -10.14661 -9.14231 -8.29918 -6.41402 1.40281 1.45081 1.53337 2.36319 2.63105 3.03842 3.17344 3.29982 3.65359 3.88825 3.91803 4.03827 4.11833 4.18389 4.23156 4.29020 4.39803 4.48854 4.50408 4.55321 4.58623 4.64521 4.70015 4.82434 4.85378 4.88491 4.91228 4.95989 4.98050 5.01852 5.08027 5.10521 5.14920 5.21447 5.22501 5.48826 5.57630 5.77944 5.99735 6.06762 6.13806 6.38165 6.59533 6.89047 7.30755 8.82298 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017720 B = 0.004676 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.718843 B = 5987.017955 C = 7172.705178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.391 6.391 3 C 0.113 3.887 4 H 0.062 0.938 5 C 0.044 3.956 6 N -0.545 5.545 7 C 0.023 3.977 8 C 0.072 3.928 9 C 0.057 3.943 10 O -0.393 6.393 11 C 0.210 3.790 12 C -0.543 4.543 13 H 0.059 0.941 14 C 0.007 3.993 15 N -0.932 5.932 16 Si 0.980 3.020 17 H -0.266 1.266 18 H -0.274 1.274 19 H -0.266 1.266 20 C -0.104 4.104 21 C -0.126 4.126 22 C -0.140 4.140 23 C -0.129 4.129 24 H 0.046 0.954 25 H 0.098 0.902 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.041 0.959 36 H -0.018 1.018 37 H -0.018 1.018 38 H 0.270 0.730 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.344 -15.157 1.716 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.310 6.310 3 C 0.055 3.945 4 H 0.080 0.920 5 C -0.084 4.084 6 N -0.271 5.271 7 C -0.125 4.125 8 C -0.056 4.056 9 C -0.021 4.021 10 O -0.313 6.313 11 C 0.135 3.865 12 C -0.581 4.581 13 H 0.078 0.922 14 C -0.191 4.191 15 N -0.571 5.571 16 Si 0.803 3.197 17 H -0.190 1.190 18 H -0.199 1.199 19 H -0.191 1.191 20 C -0.122 4.122 21 C -0.163 4.163 22 C -0.178 4.178 23 C -0.166 4.166 24 H 0.065 0.935 25 H 0.117 0.883 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.000 1.000 37 H 0.000 1.000 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.726 -15.305 2.115 21.344 hybrid contribution -0.156 0.948 -0.472 1.070 sum -14.882 -14.357 1.643 20.743 Atomic orbital electron populations 1.22943 0.80184 1.03636 1.00435 1.87876 1.20663 1.27423 1.94989 1.21712 0.94516 0.83870 0.94386 0.91979 1.22486 0.99079 0.88919 0.97919 1.61651 1.37474 1.02290 1.25665 1.22476 0.92388 0.96922 1.00738 1.22041 0.98176 0.95775 0.89611 1.22620 0.87528 0.97698 0.94212 1.87905 1.37175 1.34210 1.71976 1.19765 0.90172 0.82584 0.93981 1.21337 1.07806 0.96448 1.32512 0.92226 1.25924 1.01621 0.94229 0.97317 1.70068 1.39069 1.01647 1.46349 0.85287 0.77737 0.77885 0.78839 1.19048 1.19926 1.19086 1.22547 0.94700 0.98746 0.96225 1.22779 0.98878 0.98182 0.96479 1.22784 0.97434 1.00800 0.96759 1.22864 0.98450 0.99569 0.95761 0.93542 0.88311 0.93740 0.91021 0.93728 0.91023 0.92383 0.94059 0.90572 0.91260 0.93660 0.94108 1.00006 1.00042 0.92118 0.89479 0.89102 0.93199 0.91236 0.90518 0.92208 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.80 113.37 1.22 1.58 16 2 O -0.39 -8.43 8.46 -148.98 -1.26 -9.69 16 3 C 0.11 2.67 2.20 30.59 0.07 2.74 16 4 H 0.06 1.42 6.35 -2.39 -0.02 1.40 16 5 C 0.04 1.07 4.63 86.30 0.40 1.47 16 6 N -0.54 -15.79 4.13 -922.46 -3.81 -19.60 16 7 C 0.02 0.57 9.21 127.69 1.18 1.74 16 8 C 0.07 2.11 5.34 86.31 0.46 2.57 16 9 C 0.06 2.13 6.01 71.98 0.43 2.56 16 10 O -0.39 -19.71 10.27 -148.98 -1.53 -21.24 16 11 C 0.21 12.12 5.69 71.24 0.41 12.53 16 12 C -0.54 -33.15 9.43 25.60 0.24 -32.91 16 13 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 14 C 0.01 0.43 5.46 84.65 0.46 0.89 16 15 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 16 Si 0.98 45.26 29.54 68.60 2.03 47.29 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 20 C -0.10 -2.84 3.48 -10.27 -0.04 -2.88 16 21 C -0.13 -3.28 7.43 31.18 0.23 -3.05 16 22 C -0.14 -3.41 8.09 31.18 0.25 -3.16 16 23 C -0.13 -3.11 7.54 31.12 0.23 -2.88 16 24 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.04 0.61 7.41 -2.39 -0.02 0.59 16 27 H 0.07 1.87 7.76 -2.39 -0.02 1.85 16 28 H 0.04 0.93 7.27 -2.38 -0.02 0.92 16 29 H 0.07 1.69 6.73 -2.38 -0.02 1.67 16 30 H 0.06 1.66 6.07 -2.39 -0.01 1.64 16 31 H 0.04 0.84 8.04 -2.39 -0.02 0.82 16 32 H 0.08 2.31 7.87 -2.39 -0.02 2.29 16 33 H 0.07 1.61 8.12 -2.39 -0.02 1.59 16 34 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 1.50 6.20 -2.38 -0.01 1.48 16 36 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 37 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 38 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.09 3.01 7.74 -2.39 -0.02 2.99 16 40 H 0.09 2.25 7.03 -2.39 -0.02 2.23 16 41 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.09 1.95 7.72 -2.39 -0.02 1.93 16 Total: -1.00 -67.59 356.03 2.19 -65.40 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.93 Total: 13.26 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 5.55 Total: -18.78 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -3.52 Total: -76.23 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -2.79 Total: -30.93 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -67.59 2.19 -65.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692230484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.893 kcal (2) G-P(sol) polarization free energy of solvation -67.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds