Wall clock time and date at job start Mon Mar 30 2020 05:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00077 * 2 1 4 4 H 1.09006 * 109.47164 * 30.00622 * 3 2 1 5 5 C 1.53002 * 109.46932 * 149.99780 * 3 2 1 6 6 N 1.46901 * 109.47457 * 298.02347 * 5 3 2 7 7 C 1.46900 * 111.00071 * 163.52376 * 6 5 3 8 8 C 1.46903 * 110.99607 * 287.47516 * 6 5 3 9 9 C 1.53000 * 109.46738 * 163.03309 * 8 6 5 10 10 O 1.42896 * 109.47375 * 66.95830 * 9 8 6 11 11 C 1.42892 * 114.00292 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47222 * 179.97438 * 11 10 9 13 13 H 1.07993 * 119.99887 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00091 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99994 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99846 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46749 * 90.00664 * 16 14 12 18 18 H 1.48499 * 109.47139 * 210.00423 * 16 14 12 19 19 H 1.48492 * 109.47455 * 330.00649 * 16 14 12 20 20 C 1.52997 * 109.47374 * 269.99763 * 3 2 1 21 21 C 1.53779 * 113.61212 * 157.49753 * 20 3 2 22 22 C 1.53785 * 87.08121 * 220.02309 * 21 20 3 23 23 C 1.53775 * 87.07972 * 25.43231 * 22 21 20 24 24 H 1.08999 * 109.46760 * 59.99595 * 1 2 3 25 25 H 1.09007 * 109.46814 * 300.00087 * 1 2 3 26 26 H 1.08995 * 109.47446 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46749 * 58.02215 * 5 3 2 28 28 H 1.08997 * 109.47505 * 178.01720 * 5 3 2 29 29 H 1.09005 * 109.46975 * 69.18630 * 7 6 5 30 30 H 1.09000 * 109.47207 * 189.17999 * 7 6 5 31 31 H 1.08996 * 109.47325 * 309.18528 * 7 6 5 32 32 H 1.08995 * 109.47701 * 283.03515 * 8 6 5 33 33 H 1.09000 * 109.47058 * 43.03478 * 8 6 5 34 34 H 1.09007 * 109.46784 * 186.95604 * 9 8 6 35 35 H 1.09001 * 109.47221 * 306.95261 * 9 8 6 36 36 H 1.09000 * 109.46978 * 299.99645 * 11 10 9 37 37 H 1.09000 * 109.47598 * 59.99879 * 11 10 9 38 38 H 0.97002 * 120.00033 * 179.97438 * 15 14 12 39 39 H 1.08993 * 112.85434 * 288.80675 * 20 3 2 40 40 H 1.08998 * 113.61729 * 334.57004 * 21 20 3 41 41 H 1.08996 * 113.61557 * 105.47339 * 21 20 3 42 42 H 1.09004 * 113.60987 * 270.88475 * 22 21 20 43 43 H 1.09001 * 113.69053 * 139.99256 * 22 21 20 44 44 H 1.09000 * 113.61645 * 220.01300 * 23 22 21 45 45 H 1.09009 * 113.61277 * 89.11826 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5140 5 6 3.3589 1.2632 0.7213 6 7 3.1541 0.8615 2.1194 7 6 4.4175 0.4329 2.7344 8 6 2.5330 1.9450 2.8928 9 6 1.9539 1.3780 4.1906 10 8 3.0187 0.9294 5.0314 11 6 2.5838 0.3793 6.2764 12 6 3.7824 -0.0594 7.0778 13 1 4.7767 0.0687 6.6762 14 6 3.6095 -0.6252 8.3231 15 7 4.6554 -1.0076 9.0227 16 14 1.8895 -0.8474 9.0174 17 1 1.3611 -2.1755 8.6147 18 1 1.9391 -0.7630 10.4991 19 1 1.0012 0.2194 8.4902 20 6 2.2177 1.7714 -1.4425 21 6 2.3078 3.2995 -1.5892 22 6 1.4687 3.1472 -2.8689 23 6 0.9163 1.8486 -2.2581 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 4.0121 0.5431 0.2283 28 1 3.8185 2.2510 0.6907 29 1 5.0729 1.2953 2.8568 30 1 4.2150 -0.0106 3.7093 31 1 4.9021 -0.3037 2.0937 32 1 3.2835 2.6994 3.1290 33 1 1.7342 2.3985 2.3061 34 1 1.3870 2.1541 4.7050 35 1 1.2959 0.5404 3.9593 36 1 2.0303 1.1349 6.8339 37 1 1.9387 -0.4790 6.0889 38 1 4.5338 -1.4053 9.8990 39 1 3.0195 1.2347 -1.9495 40 1 1.7981 3.8452 -0.7952 41 1 3.3196 3.6618 -1.7711 42 1 2.0663 2.9879 -3.7665 43 1 0.7159 3.9255 -2.9942 44 1 0.8047 1.0395 -2.9799 45 1 0.0261 1.9976 -1.6469 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692230485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:52 Heat of formation + Delta-G solvation = -65.346697 kcal Electronic energy + Delta-G solvation = -21738.182293 eV Core-core repulsion = 18564.022011 eV Total energy + Delta-G solvation = -3174.160282 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.94521 -37.84792 -36.86675 -35.83836 -32.62836 -30.84696 -29.41774 -27.55407 -26.52035 -26.04170 -25.70585 -23.47507 -21.87752 -21.78527 -20.37293 -19.74615 -16.90935 -16.72979 -16.33893 -15.96144 -15.58511 -15.39602 -14.79211 -14.62397 -14.32172 -13.98887 -13.78532 -13.48386 -12.88736 -12.69624 -12.50407 -12.31501 -12.21818 -12.13781 -11.91395 -11.55920 -11.42951 -11.34323 -11.24031 -10.89226 -10.79741 -10.66198 -10.51382 -10.41866 -10.23148 -9.83906 -9.29882 -9.13829 -8.77999 -8.41127 -7.96500 -6.09592 -4.08257 3.27053 3.33673 3.35413 3.72805 4.05150 4.34465 4.37820 4.43772 4.51086 4.60681 4.70283 4.94728 5.16208 5.21193 5.22347 5.27814 5.36586 5.40211 5.43306 5.46583 5.54288 5.57150 5.60613 5.66781 5.67752 5.74276 5.86246 5.91001 5.98082 5.98724 6.03476 6.13979 6.19369 6.30522 6.64885 6.89574 7.04869 7.25087 7.37549 7.45202 7.63537 8.05442 8.69424 9.01434 9.50224 11.03432 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.035181 B = 0.003439 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.690936 B = 8139.653320 C = 8437.943004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.106 3.894 4 H 0.058 0.942 5 C 0.055 3.945 6 N -0.528 5.528 7 C 0.023 3.977 8 C 0.058 3.942 9 C 0.064 3.936 10 O -0.376 6.376 11 C 0.168 3.832 12 C -0.517 4.517 13 H 0.082 0.918 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.876 3.124 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.267 1.267 20 C -0.132 4.132 21 C -0.135 4.135 22 C -0.143 4.143 23 C -0.137 4.137 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.019 0.981 30 H 0.106 0.894 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.047 0.953 36 H 0.000 1.000 37 H -0.001 1.001 38 H 0.266 0.734 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.595 7.791 -22.834 25.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.281 6.281 3 C 0.047 3.953 4 H 0.076 0.924 5 C -0.073 4.073 6 N -0.252 5.252 7 C -0.124 4.124 8 C -0.070 4.070 9 C -0.014 4.014 10 O -0.295 6.295 11 C 0.093 3.907 12 C -0.555 4.555 13 H 0.100 0.900 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.703 3.297 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.192 1.192 20 C -0.151 4.151 21 C -0.173 4.173 22 C -0.180 4.180 23 C -0.174 4.174 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.125 0.875 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.018 0.982 37 H 0.017 0.983 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.539 7.143 -22.683 25.268 hybrid contribution -0.809 0.730 0.549 1.220 sum -9.348 7.873 -22.134 25.284 Atomic orbital electron populations 1.22909 0.82066 1.02506 0.99626 1.87978 1.18691 1.26659 1.94726 1.22146 0.94939 0.85260 0.92959 0.92375 1.22220 0.95621 0.99527 0.89929 1.61940 1.26354 1.36382 1.00526 1.22635 0.88564 0.99035 1.02149 1.22193 0.98581 0.92493 0.93737 1.22323 0.91087 0.97623 0.90392 1.87893 1.30790 1.80678 1.30188 1.20580 0.96751 0.91918 0.81479 1.20890 0.93836 1.39972 1.00773 0.90013 1.24768 0.96915 0.94927 0.96386 1.69877 1.29303 1.41667 1.12647 0.86846 0.85141 0.79199 0.78531 1.19915 1.20881 1.19154 1.23091 0.99031 0.96385 0.96571 1.22923 1.00614 0.95655 0.98100 1.22827 0.99629 0.98039 0.97504 1.22977 0.97271 0.97912 0.99245 0.94005 0.94343 0.90097 0.90288 0.93836 0.96244 0.87526 0.92736 0.94108 0.90949 0.94327 0.93447 0.98189 0.98349 0.92412 0.88652 0.90141 0.91316 0.90234 0.91566 0.91350 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.57 101.05 1.07 1.33 16 2 O -0.36 -4.75 10.20 -35.23 -0.36 -5.11 16 3 C 0.11 1.17 2.06 -26.73 -0.06 1.12 16 4 H 0.06 0.64 5.96 -51.93 -0.31 0.33 16 5 C 0.06 0.69 4.65 -3.82 -0.02 0.68 16 6 N -0.53 -8.27 4.56 -242.91 -1.11 -9.38 16 7 C 0.02 0.40 9.07 60.06 0.54 0.95 16 8 C 0.06 0.88 5.36 -3.82 -0.02 0.86 16 9 C 0.06 1.15 6.23 37.16 0.23 1.38 16 10 O -0.38 -8.67 7.43 -35.23 -0.26 -8.94 16 11 C 0.17 4.30 4.76 36.01 0.17 4.47 16 12 C -0.52 -15.38 9.99 -34.44 -0.34 -15.72 16 13 H 0.08 2.64 8.06 -52.49 -0.42 2.22 16 14 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 15 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 16 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 20 C -0.13 -1.18 3.36 -89.81 -0.30 -1.48 16 21 C -0.14 -1.03 7.63 -25.92 -0.20 -1.23 16 22 C -0.14 -0.99 8.08 -25.92 -0.21 -1.20 16 23 C -0.14 -1.07 6.18 -25.92 -0.16 -1.23 16 24 H 0.04 0.35 4.95 -51.93 -0.26 0.09 16 25 H 0.04 0.39 8.09 -51.92 -0.42 -0.03 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.00 7.81 -51.92 -0.41 0.59 16 28 H 0.04 0.50 8.04 -51.93 -0.42 0.08 16 29 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 30 H 0.11 2.23 5.71 -51.93 -0.30 1.93 16 31 H 0.05 0.85 7.88 -51.93 -0.41 0.44 16 32 H 0.04 0.63 7.94 -51.93 -0.41 0.22 16 33 H 0.07 0.91 6.29 -51.93 -0.33 0.58 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.00 0.01 7.20 -51.93 -0.37 -0.36 16 37 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16 38 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.61 7.96 -51.93 -0.41 0.20 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.62 6.33 -51.92 -0.33 0.29 16 LS Contribution 349.01 15.07 5.26 5.26 Total: -1.00 -31.88 349.01 -7.90 -39.78 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -8.15 Total: -3.52 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 0.61 Total: -8.05 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.34 Total: -36.42 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.62 Total: -14.05 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.88 -7.90 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692230485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.563 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds