Wall clock time and date at job start Mon Mar 30 2020 05:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00077 * 2 1 4 4 H 1.09006 * 109.47164 * 30.00622 * 3 2 1 5 5 C 1.53002 * 109.46932 * 149.99780 * 3 2 1 6 6 N 1.46901 * 109.47457 * 298.02347 * 5 3 2 7 7 C 1.46900 * 111.00071 * 163.52376 * 6 5 3 8 8 C 1.46903 * 110.99607 * 287.47516 * 6 5 3 9 9 C 1.53000 * 109.46738 * 163.03309 * 8 6 5 10 10 O 1.42896 * 109.47375 * 66.95830 * 9 8 6 11 11 C 1.42892 * 114.00292 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47222 * 179.97438 * 11 10 9 13 13 H 1.07993 * 119.99887 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00091 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99994 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99846 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46749 * 90.00664 * 16 14 12 18 18 H 1.48499 * 109.47139 * 210.00423 * 16 14 12 19 19 H 1.48492 * 109.47455 * 330.00649 * 16 14 12 20 20 C 1.52997 * 109.47374 * 269.99763 * 3 2 1 21 21 C 1.53779 * 113.61212 * 157.49753 * 20 3 2 22 22 C 1.53785 * 87.08121 * 220.02309 * 21 20 3 23 23 C 1.53775 * 87.07972 * 25.43231 * 22 21 20 24 24 H 1.08999 * 109.46760 * 59.99595 * 1 2 3 25 25 H 1.09007 * 109.46814 * 300.00087 * 1 2 3 26 26 H 1.08995 * 109.47446 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46749 * 58.02215 * 5 3 2 28 28 H 1.08997 * 109.47505 * 178.01720 * 5 3 2 29 29 H 1.09005 * 109.46975 * 69.18630 * 7 6 5 30 30 H 1.09000 * 109.47207 * 189.17999 * 7 6 5 31 31 H 1.08996 * 109.47325 * 309.18528 * 7 6 5 32 32 H 1.08995 * 109.47701 * 283.03515 * 8 6 5 33 33 H 1.09000 * 109.47058 * 43.03478 * 8 6 5 34 34 H 1.09007 * 109.46784 * 186.95604 * 9 8 6 35 35 H 1.09001 * 109.47221 * 306.95261 * 9 8 6 36 36 H 1.09000 * 109.46978 * 299.99645 * 11 10 9 37 37 H 1.09000 * 109.47598 * 59.99879 * 11 10 9 38 38 H 0.97002 * 120.00033 * 179.97438 * 15 14 12 39 39 H 1.08993 * 112.85434 * 288.80675 * 20 3 2 40 40 H 1.08998 * 113.61729 * 334.57004 * 21 20 3 41 41 H 1.08996 * 113.61557 * 105.47339 * 21 20 3 42 42 H 1.09004 * 113.60987 * 270.88475 * 22 21 20 43 43 H 1.09001 * 113.69053 * 139.99256 * 22 21 20 44 44 H 1.09000 * 113.61645 * 220.01300 * 23 22 21 45 45 H 1.09009 * 113.61277 * 89.11826 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5140 5 6 3.3589 1.2632 0.7213 6 7 3.1541 0.8615 2.1194 7 6 4.4175 0.4329 2.7344 8 6 2.5330 1.9450 2.8928 9 6 1.9539 1.3780 4.1906 10 8 3.0187 0.9294 5.0314 11 6 2.5838 0.3793 6.2764 12 6 3.7824 -0.0594 7.0778 13 1 4.7767 0.0687 6.6762 14 6 3.6095 -0.6252 8.3231 15 7 4.6554 -1.0076 9.0227 16 14 1.8895 -0.8474 9.0174 17 1 1.3611 -2.1755 8.6147 18 1 1.9391 -0.7630 10.4991 19 1 1.0012 0.2194 8.4902 20 6 2.2177 1.7714 -1.4425 21 6 2.3078 3.2995 -1.5892 22 6 1.4687 3.1472 -2.8689 23 6 0.9163 1.8486 -2.2581 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 4.0121 0.5431 0.2283 28 1 3.8185 2.2510 0.6907 29 1 5.0729 1.2953 2.8568 30 1 4.2150 -0.0106 3.7093 31 1 4.9021 -0.3037 2.0937 32 1 3.2835 2.6994 3.1290 33 1 1.7342 2.3985 2.3061 34 1 1.3870 2.1541 4.7050 35 1 1.2959 0.5404 3.9593 36 1 2.0303 1.1349 6.8339 37 1 1.9387 -0.4790 6.0889 38 1 4.5338 -1.4053 9.8990 39 1 3.0195 1.2347 -1.9495 40 1 1.7981 3.8452 -0.7952 41 1 3.3196 3.6618 -1.7711 42 1 2.0663 2.9879 -3.7665 43 1 0.7159 3.9255 -2.9942 44 1 0.8047 1.0395 -2.9799 45 1 0.0261 1.9976 -1.6469 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692230485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:51 Heat of formation + Delta-G solvation = -87.028241 kcal Electronic energy + Delta-G solvation = -21739.122476 eV Core-core repulsion = 18564.022011 eV Total energy + Delta-G solvation = -3175.100464 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72357 -39.20238 -37.88170 -37.17893 -34.84427 -31.97848 -30.84392 -29.47682 -27.32855 -26.98083 -26.37672 -24.70702 -23.89171 -22.87278 -21.51661 -20.36573 -19.04339 -17.64071 -17.61068 -17.21346 -16.92570 -16.46801 -16.10015 -15.94967 -15.53882 -15.44434 -14.91212 -14.64583 -14.47677 -13.95839 -13.69579 -13.44388 -13.34621 -13.08549 -13.06546 -12.90046 -12.79228 -12.49598 -12.44962 -12.34503 -12.08523 -11.87917 -11.80895 -11.48752 -11.29585 -11.17174 -11.05981 -10.90547 -10.27905 -10.09358 -9.19383 -8.36698 -6.43891 1.33136 1.35952 1.46664 2.29592 2.88853 2.96104 2.97202 3.12035 3.64976 3.80583 3.84735 3.98863 4.04587 4.15572 4.30804 4.34074 4.43236 4.50063 4.55286 4.57070 4.59653 4.63468 4.65204 4.73729 4.79366 4.83788 4.85278 4.88657 4.93178 4.98084 5.03194 5.04905 5.09711 5.13135 5.35344 5.36275 5.50469 5.59012 5.94761 6.09205 6.21390 6.48592 6.59990 6.76990 7.20579 8.80315 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.035181 B = 0.003439 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.690936 B = 8139.653320 C = 8437.943004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.391 6.391 3 C 0.109 3.891 4 H 0.063 0.937 5 C 0.056 3.944 6 N -0.541 5.541 7 C 0.033 3.967 8 C 0.064 3.936 9 C 0.055 3.945 10 O -0.395 6.395 11 C 0.179 3.821 12 C -0.540 4.540 13 H 0.032 0.968 14 C 0.012 3.988 15 N -0.943 5.943 16 Si 0.954 3.046 17 H -0.262 1.262 18 H -0.273 1.273 19 H -0.246 1.246 20 C -0.133 4.133 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.136 4.136 24 H 0.061 0.939 25 H 0.037 0.963 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.018 0.982 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.010 0.990 37 H 0.005 0.995 38 H 0.272 0.728 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.236 8.867 -24.048 27.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.310 6.310 3 C 0.051 3.949 4 H 0.081 0.919 5 C -0.072 4.072 6 N -0.265 5.265 7 C -0.115 4.115 8 C -0.064 4.064 9 C -0.022 4.022 10 O -0.315 6.315 11 C 0.104 3.896 12 C -0.578 4.578 13 H 0.050 0.950 14 C -0.185 4.185 15 N -0.582 5.582 16 Si 0.776 3.224 17 H -0.186 1.186 18 H -0.198 1.198 19 H -0.169 1.169 20 C -0.152 4.152 21 C -0.171 4.171 22 C -0.174 4.174 23 C -0.173 4.173 24 H 0.079 0.921 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.181 8.235 -23.931 27.668 hybrid contribution 0.109 0.396 0.844 0.938 sum -11.072 8.631 -23.087 27.020 Atomic orbital electron populations 1.23029 0.80798 1.03071 1.00506 1.87935 1.20230 1.27881 1.94968 1.22170 0.93851 0.84762 0.94143 0.91869 1.22295 0.96930 1.00013 0.87929 1.61909 1.25375 1.37157 1.02021 1.22413 0.89599 0.99089 1.00438 1.22201 0.99396 0.92008 0.92789 1.22648 0.90351 0.98159 0.91006 1.87900 1.33054 1.80831 1.29700 1.20274 0.94658 0.92369 0.82346 1.21148 0.93438 1.41137 1.02102 0.95007 1.25824 1.02317 0.93965 0.96444 1.70031 1.32385 1.42431 1.13371 0.85621 0.78705 0.80129 0.77962 1.18646 1.19823 1.16939 1.23061 0.99701 0.97286 0.95177 1.22939 1.01082 0.94455 0.98615 1.22810 0.99627 0.97672 0.97308 1.22985 0.96782 0.98458 0.99098 0.92099 0.94408 0.89840 0.90746 0.92441 0.96376 0.91614 0.91713 0.94485 0.87603 0.92411 0.93504 0.97196 0.97707 0.91859 0.89176 0.89782 0.91000 0.89750 0.90653 0.91426 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.57 113.37 1.20 1.61 16 2 O -0.39 -9.70 10.20 -148.98 -1.52 -11.22 16 3 C 0.11 2.21 2.06 30.59 0.06 2.28 16 4 H 0.06 1.20 5.96 -2.38 -0.01 1.19 16 5 C 0.06 1.33 4.65 86.30 0.40 1.73 16 6 N -0.54 -16.53 4.56 -922.44 -4.21 -20.74 16 7 C 0.03 1.14 9.07 127.69 1.16 2.30 16 8 C 0.06 1.83 5.36 86.30 0.46 2.30 16 9 C 0.06 1.93 6.23 71.98 0.45 2.38 16 10 O -0.40 -18.41 7.43 -148.98 -1.11 -19.52 16 11 C 0.18 9.15 4.76 71.24 0.34 9.49 16 12 C -0.54 -33.25 9.99 25.60 0.26 -32.99 16 13 H 0.03 2.19 8.06 -2.91 -0.02 2.17 16 14 C 0.01 0.74 5.47 84.65 0.46 1.20 16 15 N -0.94 -59.96 13.96 21.45 0.30 -59.66 16 16 Si 0.95 44.12 27.47 68.60 1.88 46.00 16 17 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.25 -10.48 6.54 99.48 0.65 -9.83 16 20 C -0.13 -2.11 3.36 -10.27 -0.03 -2.14 16 21 C -0.13 -1.70 7.63 31.12 0.24 -1.46 16 22 C -0.14 -1.53 8.08 31.12 0.25 -1.27 16 23 C -0.14 -1.80 6.18 31.12 0.19 -1.61 16 24 H 0.06 0.88 4.95 -2.39 -0.01 0.87 16 25 H 0.04 0.70 8.09 -2.38 -0.02 0.68 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.83 7.81 -2.38 -0.02 1.81 16 28 H 0.06 1.21 8.04 -2.39 -0.02 1.19 16 29 H 0.02 0.61 8.00 -2.38 -0.02 0.59 16 30 H 0.07 2.88 5.71 -2.39 -0.01 2.87 16 31 H 0.06 2.06 7.88 -2.39 -0.02 2.04 16 32 H 0.04 1.10 7.94 -2.39 -0.02 1.08 16 33 H 0.11 2.34 6.29 -2.39 -0.02 2.32 16 34 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.01 0.50 7.20 -2.39 -0.02 0.49 16 37 H 0.01 0.26 7.57 -2.39 -0.02 0.24 16 38 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.02 7.96 -2.39 -0.02 1.00 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 44 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.09 1.06 6.33 -2.38 -0.02 1.05 16 Total: -1.00 -70.72 349.01 1.66 -69.06 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.88 Total: 12.26 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 5.44 Total: -16.18 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -3.91 Total: -80.40 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -2.63 Total: -30.74 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Total: -70.72 1.66 -69.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692230485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.970 kcal (2) G-P(sol) polarization free energy of solvation -70.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds