Wall clock time and date at job start Mon Mar 30 2020 04:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.53622 * 2 1 4 4 C 1.53121 * 109.49750 * 239.90000 * 2 1 3 5 5 C 1.53115 * 109.16434 * 297.71293 * 4 2 1 6 6 C 1.53031 * 109.27992 * 302.34945 * 5 4 2 7 7 N 1.46846 * 109.51713 * 59.18190 * 6 5 4 8 8 C 1.46850 * 111.19801 * 298.24272 * 7 6 5 9 9 H 1.08994 * 109.45966 * 301.74554 * 8 7 6 10 10 C 1.53000 * 109.46265 * 181.76465 * 8 7 6 11 11 C 1.53004 * 109.46793 * 64.98116 * 10 8 7 12 12 O 1.42898 * 109.46808 * 179.97438 * 11 10 8 13 13 C 1.42904 * 113.99912 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47221 * 179.97438 * 13 12 11 15 15 O 1.42905 * 109.46728 * 65.00652 * 14 13 12 16 16 C 1.42899 * 113.99778 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46785 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00689 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99662 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00357 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99656 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47281 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46998 * 120.00126 * 21 19 17 24 24 H 1.48504 * 109.46580 * 239.99655 * 21 19 17 25 25 H 1.09007 * 109.46590 * 299.90463 * 1 2 3 26 26 H 1.09000 * 109.47066 * 59.89823 * 1 2 3 27 27 H 1.09001 * 109.47409 * 179.90422 * 1 2 3 28 28 H 1.09000 * 109.52336 * 57.62575 * 4 2 1 29 29 H 1.09006 * 109.52215 * 177.80755 * 4 2 1 30 30 H 1.09000 * 109.49951 * 62.29365 * 5 4 2 31 31 H 1.08996 * 109.50262 * 182.36251 * 5 4 2 32 32 H 1.09000 * 109.46280 * 179.19242 * 6 5 4 33 33 H 1.08999 * 109.46020 * 299.16917 * 6 5 4 34 34 H 1.00896 * 110.99311 * 174.15125 * 7 6 5 35 35 H 1.09001 * 109.47330 * 304.98203 * 10 8 7 36 36 H 1.08999 * 109.47090 * 184.98032 * 10 8 7 37 37 H 1.09001 * 109.47111 * 59.99954 * 11 10 8 38 38 H 1.08999 * 109.47233 * 299.99828 * 11 10 8 39 39 H 1.09000 * 109.46865 * 60.00255 * 13 12 11 40 40 H 1.08994 * 109.47229 * 300.00235 * 13 12 11 41 41 H 1.09000 * 109.47486 * 305.00590 * 14 13 12 42 42 H 1.09001 * 109.47362 * 184.99867 * 14 13 12 43 43 H 1.08997 * 109.47171 * 299.99768 * 16 15 14 44 44 H 1.08997 * 109.47442 * 59.99964 * 16 15 14 45 45 H 0.97001 * 120.00525 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0411 -0.7239 -1.2488 5 6 1.5749 -2.1818 -1.2108 6 6 2.0845 -2.8420 0.0723 7 7 1.5673 -2.1135 1.2377 8 6 2.0410 -0.7235 1.2480 9 1 3.1309 -0.7113 1.2543 10 6 1.5160 -0.0153 2.4985 11 6 2.1264 -0.6608 3.7442 12 8 1.6366 0.0010 4.9122 13 6 2.1475 -0.5280 6.1374 14 6 1.5595 0.2526 7.3145 15 8 0.1476 0.0387 7.3701 16 6 -0.5027 0.7268 8.4404 17 6 -1.9801 0.4318 8.4029 18 1 -2.3823 -0.2159 7.6381 19 6 -2.8186 0.9898 9.3446 20 7 -2.3290 1.7790 10.2758 21 14 -4.6498 0.6236 9.2986 22 1 -4.9443 -0.2856 8.1621 23 1 -5.0569 -0.0254 10.5708 24 1 -5.4038 1.8913 9.1262 25 1 -0.3633 0.5124 0.8909 26 1 -0.3633 0.5154 -0.8891 27 1 -0.3634 -1.0276 -0.0017 28 1 1.6442 -0.2375 -2.1398 29 1 3.1305 -0.6902 -1.2691 30 1 0.4856 -2.2161 -1.2299 31 1 1.9708 -2.7131 -2.0762 32 1 1.7421 -3.8762 0.1093 33 1 3.1742 -2.8196 0.0842 34 1 1.8108 -2.5848 2.0959 35 1 0.4304 -0.1046 2.5380 36 1 1.7929 1.0383 2.4626 37 1 3.2121 -0.5715 3.7048 38 1 1.8496 -1.7144 3.7802 39 1 3.2336 -0.4367 6.1476 40 1 1.8704 -1.5787 6.2230 41 1 1.7611 1.3156 7.1826 42 1 2.0158 -0.0913 8.2428 43 1 -0.0891 0.3924 9.3918 44 1 -0.3440 1.7997 8.3323 45 1 -2.9189 2.1719 10.9381 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697259919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:38 Heat of formation + Delta-G solvation = -116.168876 kcal Electronic energy + Delta-G solvation = -21006.836482 eV Core-core repulsion = 17830.472385 eV Total energy + Delta-G solvation = -3176.364097 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.70612 -37.87301 -36.30128 -33.58067 -33.09552 -32.66014 -30.14406 -28.63029 -26.82252 -26.49758 -24.41571 -22.71849 -22.37478 -21.89737 -21.07186 -18.72164 -17.17535 -16.38807 -16.30940 -16.20325 -15.49031 -15.02447 -14.78069 -14.52537 -14.27668 -14.13681 -13.84519 -13.79313 -13.49042 -12.83496 -12.65258 -12.55506 -12.00334 -11.77269 -11.68505 -11.54440 -11.28595 -11.13898 -10.92364 -10.83938 -10.74945 -10.70937 -10.53478 -10.37687 -10.29691 -9.95034 -9.37481 -9.03247 -8.78700 -8.61205 -8.12245 -6.06397 -4.07408 3.33038 3.39168 3.46687 3.79024 3.93519 4.39355 4.46998 4.59763 4.68348 4.86297 4.89665 5.00786 5.10543 5.14325 5.23335 5.30151 5.31182 5.34879 5.42467 5.49576 5.53857 5.55981 5.62037 5.62909 5.71512 5.78269 5.92682 5.98935 6.02349 6.03803 6.06455 6.11107 6.25404 6.29860 6.40814 6.86232 7.14312 7.16009 7.45898 7.48980 7.85314 8.20469 8.63456 9.06824 9.57265 11.05381 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022714 B = 0.003017 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.437319 B = 9279.410702 C = 9991.626274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 H 0.071 0.929 4 C -0.117 4.117 5 C -0.120 4.120 6 C 0.059 3.941 7 N -0.683 5.683 8 C 0.098 3.902 9 H 0.036 0.964 10 C -0.116 4.116 11 C 0.061 3.939 12 O -0.372 6.372 13 C 0.069 3.931 14 C 0.064 3.936 15 O -0.388 6.388 16 C 0.194 3.806 17 C -0.511 4.511 18 H 0.067 0.933 19 C 0.055 3.945 20 N -0.900 5.900 21 Si 0.908 3.092 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.282 1.282 25 H 0.058 0.942 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.026 0.974 34 H 0.343 0.657 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.045 0.955 42 H 0.051 0.949 43 H 0.004 0.996 44 H 0.006 0.994 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.691 -6.605 -21.297 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.089 0.911 4 C -0.154 4.154 5 C -0.158 4.158 6 C -0.071 4.071 7 N -0.317 5.317 8 C -0.012 4.012 9 H 0.054 0.946 10 C -0.154 4.154 11 C -0.016 4.016 12 O -0.291 6.291 13 C -0.008 4.008 14 C -0.014 4.014 15 O -0.308 6.308 16 C 0.119 3.881 17 C -0.550 4.550 18 H 0.086 0.914 19 C -0.146 4.146 20 N -0.540 5.540 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.209 1.209 24 H -0.208 1.208 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.163 0.837 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.022 0.978 44 H 0.023 0.977 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.808 -6.309 -21.578 25.393 hybrid contribution 0.473 -0.260 0.666 0.857 sum 12.281 -6.569 -20.912 25.125 Atomic orbital electron populations 1.21830 0.94166 1.02934 1.01141 1.21158 0.97282 0.98415 0.93383 0.91052 1.21622 1.00066 0.95874 0.97870 1.21627 1.02126 0.95530 0.96474 1.21893 0.96563 0.97524 0.91094 1.60305 1.63750 1.02299 1.05328 1.21410 0.96170 0.88741 0.94840 0.94617 1.21640 1.03021 0.99751 0.90965 1.22450 0.96576 0.96173 0.86415 1.88035 1.69822 1.58196 1.13012 1.22556 0.95939 0.97989 0.84284 1.22254 0.85842 0.98573 0.94757 1.87921 1.16304 1.72422 1.54146 1.20214 0.92547 0.91301 0.84012 1.21114 0.91111 1.29305 1.13437 0.91438 1.24958 0.99560 0.95015 0.95075 1.69974 1.35593 1.32069 1.16339 0.86280 0.84033 0.78179 0.78017 1.19419 1.20886 1.20841 0.92250 0.93668 0.91140 0.91807 0.92544 0.90706 0.91985 0.90867 0.95572 0.83729 0.89360 0.90668 0.94437 0.93575 0.93046 0.92810 0.93712 0.93058 0.97802 0.97659 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.38 37.16 0.31 -1.09 16 2 C -0.08 -0.75 2.75 -90.53 -0.25 -1.00 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.12 -0.90 5.51 -26.61 -0.15 -1.05 16 5 C -0.12 -0.90 5.74 -26.66 -0.15 -1.06 16 6 C 0.06 0.46 6.55 -3.84 -0.03 0.44 16 7 N -0.68 -6.45 5.79 -106.76 -0.62 -7.07 16 8 C 0.10 0.94 2.19 -67.72 -0.15 0.79 16 9 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 10 C -0.12 -1.36 4.73 -26.73 -0.13 -1.48 16 11 C 0.06 0.77 5.71 37.16 0.21 0.99 16 12 O -0.37 -6.45 10.31 -40.08 -0.41 -6.86 16 13 C 0.07 1.10 6.32 37.16 0.23 1.34 16 14 C 0.06 1.24 6.32 37.16 0.23 1.48 16 15 O -0.39 -9.95 10.29 -40.08 -0.41 -10.37 16 16 C 0.19 5.52 5.69 36.01 0.20 5.73 16 17 C -0.51 -15.59 9.43 -34.44 -0.32 -15.91 16 18 H 0.07 2.06 7.81 -52.49 -0.41 1.65 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 21 Si 0.91 22.35 29.54 -169.99 -5.02 17.33 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H 0.06 0.64 6.53 -51.93 -0.34 0.30 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.74 6.01 -51.93 -0.31 0.43 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.63 6.58 -51.93 -0.34 0.28 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.34 3.12 7.00 -39.29 -0.28 2.85 16 35 H 0.09 1.19 6.70 -51.93 -0.35 0.85 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.55 6.63 -51.93 -0.34 0.20 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 44 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 351.16 15.07 5.29 5.29 Total: -1.00 -32.81 351.16 -8.78 -41.58 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -8.27 Total: -3.82 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -0.07 Total: -9.31 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.12 Total: -33.85 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.83 Total: -17.23 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.81 -8.78 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697259919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.585 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds