Wall clock time and date at job start Mon Mar 30 2020 04:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.53622 * 2 1 4 4 C 1.53121 * 109.49750 * 239.90000 * 2 1 3 5 5 C 1.53115 * 109.16434 * 297.71293 * 4 2 1 6 6 C 1.53031 * 109.27992 * 302.34945 * 5 4 2 7 7 N 1.46846 * 109.51713 * 59.18190 * 6 5 4 8 8 C 1.46850 * 111.19801 * 298.24272 * 7 6 5 9 9 H 1.08994 * 109.45966 * 301.74554 * 8 7 6 10 10 C 1.53000 * 109.46265 * 181.76465 * 8 7 6 11 11 C 1.53004 * 109.46793 * 64.98116 * 10 8 7 12 12 O 1.42898 * 109.46808 * 179.97438 * 11 10 8 13 13 C 1.42904 * 113.99912 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47221 * 179.97438 * 13 12 11 15 15 O 1.42905 * 109.46728 * 65.00652 * 14 13 12 16 16 C 1.42899 * 113.99778 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46785 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00689 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99662 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00357 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99656 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47281 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46998 * 120.00126 * 21 19 17 24 24 H 1.48504 * 109.46580 * 239.99655 * 21 19 17 25 25 H 1.09007 * 109.46590 * 299.90463 * 1 2 3 26 26 H 1.09000 * 109.47066 * 59.89823 * 1 2 3 27 27 H 1.09001 * 109.47409 * 179.90422 * 1 2 3 28 28 H 1.09000 * 109.52336 * 57.62575 * 4 2 1 29 29 H 1.09006 * 109.52215 * 177.80755 * 4 2 1 30 30 H 1.09000 * 109.49951 * 62.29365 * 5 4 2 31 31 H 1.08996 * 109.50262 * 182.36251 * 5 4 2 32 32 H 1.09000 * 109.46280 * 179.19242 * 6 5 4 33 33 H 1.08999 * 109.46020 * 299.16917 * 6 5 4 34 34 H 1.00896 * 110.99311 * 174.15125 * 7 6 5 35 35 H 1.09001 * 109.47330 * 304.98203 * 10 8 7 36 36 H 1.08999 * 109.47090 * 184.98032 * 10 8 7 37 37 H 1.09001 * 109.47111 * 59.99954 * 11 10 8 38 38 H 1.08999 * 109.47233 * 299.99828 * 11 10 8 39 39 H 1.09000 * 109.46865 * 60.00255 * 13 12 11 40 40 H 1.08994 * 109.47229 * 300.00235 * 13 12 11 41 41 H 1.09000 * 109.47486 * 305.00590 * 14 13 12 42 42 H 1.09001 * 109.47362 * 184.99867 * 14 13 12 43 43 H 1.08997 * 109.47171 * 299.99768 * 16 15 14 44 44 H 1.08997 * 109.47442 * 59.99964 * 16 15 14 45 45 H 0.97001 * 120.00525 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0411 -0.7239 -1.2488 5 6 1.5749 -2.1818 -1.2108 6 6 2.0845 -2.8420 0.0723 7 7 1.5673 -2.1135 1.2377 8 6 2.0410 -0.7235 1.2480 9 1 3.1309 -0.7113 1.2543 10 6 1.5160 -0.0153 2.4985 11 6 2.1264 -0.6608 3.7442 12 8 1.6366 0.0010 4.9122 13 6 2.1475 -0.5280 6.1374 14 6 1.5595 0.2526 7.3145 15 8 0.1476 0.0387 7.3701 16 6 -0.5027 0.7268 8.4404 17 6 -1.9801 0.4318 8.4029 18 1 -2.3823 -0.2159 7.6381 19 6 -2.8186 0.9898 9.3446 20 7 -2.3290 1.7790 10.2758 21 14 -4.6498 0.6236 9.2986 22 1 -4.9443 -0.2856 8.1621 23 1 -5.0569 -0.0254 10.5708 24 1 -5.4038 1.8913 9.1262 25 1 -0.3633 0.5124 0.8909 26 1 -0.3633 0.5154 -0.8891 27 1 -0.3634 -1.0276 -0.0017 28 1 1.6442 -0.2375 -2.1398 29 1 3.1305 -0.6902 -1.2691 30 1 0.4856 -2.2161 -1.2299 31 1 1.9708 -2.7131 -2.0762 32 1 1.7421 -3.8762 0.1093 33 1 3.1742 -2.8196 0.0842 34 1 1.8108 -2.5848 2.0959 35 1 0.4304 -0.1046 2.5380 36 1 1.7929 1.0383 2.4626 37 1 3.2121 -0.5715 3.7048 38 1 1.8496 -1.7144 3.7802 39 1 3.2336 -0.4367 6.1476 40 1 1.8704 -1.5787 6.2230 41 1 1.7611 1.3156 7.1826 42 1 2.0158 -0.0913 8.2428 43 1 -0.0891 0.3924 9.3918 44 1 -0.3440 1.7997 8.3323 45 1 -2.9189 2.1719 10.9381 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697259919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:37 Heat of formation + Delta-G solvation = -138.305731 kcal Electronic energy + Delta-G solvation = -21007.796408 eV Core-core repulsion = 17830.472385 eV Total energy + Delta-G solvation = -3177.324023 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.45749 -39.23352 -38.04999 -34.98613 -34.35666 -33.79912 -31.46577 -29.84076 -28.77119 -27.34244 -25.23846 -24.55818 -23.46468 -23.36509 -21.92274 -19.42542 -18.67065 -18.13496 -17.72816 -17.24175 -16.90703 -16.37679 -16.16801 -15.90592 -15.60389 -15.28686 -15.03163 -14.49428 -14.44595 -14.17196 -13.95912 -13.50597 -13.34057 -13.24851 -12.92214 -12.75494 -12.66390 -12.43577 -12.37904 -12.17474 -12.12534 -11.79446 -11.70309 -11.51049 -11.29017 -11.12536 -11.03246 -10.89792 -10.51818 -10.25596 -9.30782 -8.33409 -6.45851 1.39370 1.41334 1.56402 2.34733 2.68772 3.00077 3.17674 3.23272 3.75486 3.86954 3.98841 4.08728 4.13855 4.22005 4.26773 4.34413 4.37674 4.40364 4.49625 4.56876 4.62698 4.64561 4.70336 4.73908 4.81940 4.87043 4.88620 4.93747 5.02279 5.09077 5.14320 5.16009 5.22515 5.30807 5.33092 5.44799 5.53921 5.63836 5.94665 6.16927 6.31351 6.47243 6.53007 6.81097 7.26168 8.79348 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022714 B = 0.003017 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.437319 B = 9279.410702 C = 9991.626274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 H 0.074 0.926 4 C -0.113 4.113 5 C -0.119 4.119 6 C 0.058 3.942 7 N -0.696 5.696 8 C 0.106 3.894 9 H 0.045 0.955 10 C -0.111 4.111 11 C 0.059 3.941 12 O -0.409 6.409 13 C 0.074 3.926 14 C 0.050 3.950 15 O -0.408 6.408 16 C 0.208 3.792 17 C -0.550 4.550 18 H 0.059 0.941 19 C 0.006 3.994 20 N -0.931 5.931 21 Si 0.985 3.015 22 H -0.266 1.266 23 H -0.268 1.268 24 H -0.270 1.270 25 H 0.041 0.959 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.344 0.656 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.070 0.930 43 H -0.009 1.009 44 H -0.017 1.017 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.065 -7.455 -22.370 26.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.071 4.071 7 N -0.329 5.329 8 C -0.004 4.004 9 H 0.063 0.937 10 C -0.149 4.149 11 C -0.018 4.018 12 O -0.329 6.329 13 C -0.002 4.002 14 C -0.027 4.027 15 O -0.328 6.328 16 C 0.133 3.867 17 C -0.587 4.587 18 H 0.077 0.923 19 C -0.193 4.193 20 N -0.570 5.570 21 Si 0.808 3.192 22 H -0.190 1.190 23 H -0.193 1.193 24 H -0.195 1.195 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.163 0.837 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.088 0.912 43 H 0.009 0.991 44 H 0.001 0.999 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.212 -7.165 -22.662 26.722 hybrid contribution 0.443 0.021 0.982 1.077 sum 12.655 -7.144 -21.681 26.100 Atomic orbital electron populations 1.21776 0.95079 1.02169 1.00665 1.21192 0.96481 0.98839 0.93937 0.90730 1.21604 1.00481 0.95777 0.97233 1.21634 1.01491 0.95643 0.96933 1.21954 0.96956 0.97659 0.90534 1.60304 1.64299 1.02345 1.05990 1.21317 0.96458 0.88768 0.93844 0.93676 1.21598 1.01456 0.99951 0.91918 1.22648 0.97925 0.96253 0.84933 1.87982 1.71078 1.59436 1.14444 1.22562 0.97834 0.97138 0.82643 1.22674 0.82854 0.99457 0.97721 1.87871 1.19846 1.72064 1.53019 1.19848 0.92468 0.90097 0.84323 1.21421 0.92496 1.30523 1.14300 0.92279 1.25988 1.05082 0.94126 0.94059 1.70069 1.37873 1.32292 1.16748 0.85112 0.77005 0.78519 0.78613 1.18972 1.19307 1.19540 0.94018 0.92805 0.92021 0.91121 0.91771 0.91801 0.90415 0.90281 0.94841 0.83668 0.91877 0.91016 0.92006 0.92842 0.88773 0.92455 0.94006 0.91188 0.99136 0.99879 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.38 71.98 0.60 -2.13 16 2 C -0.09 -1.45 2.75 -10.74 -0.03 -1.48 16 3 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.11 -1.53 5.51 30.67 0.17 -1.36 16 5 C -0.12 -1.59 5.74 30.64 0.18 -1.41 16 6 C 0.06 0.81 6.55 86.32 0.57 1.38 16 7 N -0.70 -12.39 5.79 -491.69 -2.85 -15.24 16 8 C 0.11 1.91 2.19 44.94 0.10 2.01 16 9 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 10 C -0.11 -2.59 4.73 30.60 0.14 -2.44 16 11 C 0.06 1.42 5.71 71.98 0.41 1.83 16 12 O -0.41 -14.04 10.31 -144.35 -1.49 -15.53 16 13 C 0.07 2.28 6.32 71.98 0.45 2.74 16 14 C 0.05 1.95 6.32 71.98 0.45 2.41 16 15 O -0.41 -21.45 10.29 -144.35 -1.49 -22.94 16 16 C 0.21 12.27 5.69 71.24 0.41 12.67 16 17 C -0.55 -34.27 9.43 25.60 0.24 -34.03 16 18 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 19 C 0.01 0.35 5.46 84.66 0.46 0.81 16 20 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 21 Si 0.99 45.67 29.54 68.60 2.03 47.70 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H 0.04 0.94 6.53 -2.38 -0.02 0.93 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 1.30 6.01 -2.39 -0.01 1.29 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.06 1.00 6.58 -2.39 -0.02 0.98 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.34 5.88 7.00 -89.70 -0.63 5.25 16 35 H 0.06 1.78 6.70 -2.39 -0.02 1.76 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 1.21 6.63 -2.39 -0.02 1.19 16 39 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 43 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 44 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 45 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -71.23 351.16 0.96 -70.27 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.31 Total: 11.69 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: 4.16 Total: -19.01 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -2.56 Total: -72.19 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -2.97 Total: -38.46 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.23 0.96 -70.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697259919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.036 kcal (2) G-P(sol) polarization free energy of solvation -71.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds