Wall clock time and date at job start Mon Mar 30 2020 06:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.35403 * 126.16439 * 100.00590 * 3 2 1 5 5 C 1.38243 * 106.59638 * 180.02562 * 4 3 2 6 6 C 1.47275 * 126.30683 * 179.97438 * 5 4 3 7 7 O 1.21927 * 119.99805 * 359.97438 * 6 5 4 8 8 C 1.41553 * 120.00307 * 179.97438 * 6 5 4 9 9 H 1.08001 * 119.99900 * 359.97438 * 8 6 5 10 10 C 1.40342 * 119.99922 * 180.02562 * 8 6 5 11 11 N 1.30530 * 119.99865 * 359.97438 * 10 8 6 12 12 Si 1.86799 * 119.99986 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46992 * 59.99175 * 12 10 8 14 14 H 1.48492 * 109.47233 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.46904 * 299.99824 * 12 10 8 16 16 N 1.35042 * 107.39208 * 359.97438 * 5 4 3 17 17 C 1.30377 * 109.07668 * 359.72840 * 16 5 4 18 18 Br 1.89094 * 125.36758 * 180.30038 * 17 16 5 19 19 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 22 22 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 23 23 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 24 24 H 1.07999 * 126.70146 * 359.95868 * 4 3 2 25 25 H 0.97000 * 119.99963 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4636 2.0713 1.0765 5 6 2.8214 3.3264 0.6207 6 6 3.3624 4.4282 1.4344 7 8 3.5318 4.2753 2.6322 8 6 3.6857 5.6648 0.8262 9 1 3.5360 5.8002 -0.2348 10 6 4.2017 6.7146 1.6016 11 7 4.3830 6.5508 2.8838 12 14 4.6290 8.3462 0.7988 13 1 3.4117 8.9251 0.1756 14 1 5.1511 9.2820 1.8268 15 1 5.6634 8.1288 -0.2444 16 7 2.5835 3.3561 -0.7083 17 6 2.1117 2.1998 -1.0827 18 35 1.6286 1.7353 -2.8509 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8934 -0.5139 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 2.5261 1.7117 2.0930 25 1 4.7393 7.2765 3.4199 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698452027.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:08 Heat of formation + Delta-G solvation = 16.385419 kcal Electronic energy + Delta-G solvation = -13196.953231 eV Core-core repulsion = 10643.860309 eV Total energy + Delta-G solvation = -2553.092922 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.990 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.39436 -36.38397 -34.65936 -32.57838 -31.55733 -30.13179 -28.10336 -26.69542 -23.76649 -22.23106 -19.98983 -19.23351 -17.09391 -15.92901 -15.26129 -15.09461 -14.41450 -13.79635 -13.48623 -13.22824 -12.75349 -12.51462 -12.27026 -11.76183 -11.45637 -11.26222 -10.93996 -10.66415 -10.47404 -10.31052 -10.19570 -9.49210 -9.20304 -8.84733 -7.66345 -7.49095 -6.23389 -4.76701 1.31973 2.26897 3.09598 3.10745 3.21169 3.26216 3.34805 4.12641 4.58888 4.61480 4.87220 5.05005 5.23261 5.49698 5.53132 5.91712 5.93586 6.05521 6.15108 6.55487 7.29218 7.31345 7.45290 8.33499 8.42344 8.90922 8.99184 10.40310 10.62146 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.029807 B = 0.006186 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.156827 B = 4525.621686 C = 5365.081006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.096 3.904 3 N -0.440 5.440 4 C -0.012 4.012 5 C -0.005 4.005 6 C 0.423 3.577 7 O -0.548 6.548 8 C -0.494 4.494 9 H 0.080 0.920 10 C 0.078 3.922 11 N -0.738 5.738 12 Si 0.910 3.090 13 H -0.264 1.264 14 H -0.279 1.279 15 H -0.264 1.264 16 N -0.413 5.413 17 C 0.158 3.842 18 Br 0.036 6.964 19 H 0.065 0.935 20 H 0.075 0.925 21 H 0.065 0.935 22 H 0.096 0.904 23 H 0.090 0.910 24 H 0.185 0.815 25 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 -12.683 -9.415 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.027 4.027 3 N -0.126 5.126 4 C -0.148 4.148 5 C -0.137 4.137 6 C 0.319 3.681 7 O -0.438 6.438 8 C -0.526 4.526 9 H 0.098 0.902 10 C -0.145 4.145 11 N -0.368 5.368 12 Si 0.734 3.266 13 H -0.189 1.189 14 H -0.205 1.205 15 H -0.189 1.189 16 N -0.134 5.134 17 C -0.179 4.179 18 Br 0.116 6.884 19 H 0.084 0.916 20 H 0.094 0.906 21 H 0.084 0.916 22 H 0.115 0.885 23 H 0.108 0.892 24 H 0.202 0.798 25 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.702 -12.372 -9.830 17.164 hybrid contribution 0.071 0.036 0.307 0.318 sum -6.631 -12.336 -9.523 16.936 Atomic orbital electron populations 1.22165 0.93961 1.03013 1.03660 1.21897 0.95937 0.80219 1.04607 1.45164 1.48003 1.12225 1.07257 1.23389 1.04992 0.94051 0.92407 1.23545 1.04385 0.96391 0.89424 1.17151 0.79677 0.84700 0.86592 1.90545 1.54398 1.83205 1.15611 1.20861 1.37775 0.97103 0.96884 0.90151 1.26058 0.93640 1.00414 0.94415 1.69970 1.28746 1.32003 1.06048 0.86382 0.79788 0.80834 0.79639 1.18869 1.20455 1.18866 1.70528 1.12570 1.16889 1.13449 1.24525 1.14035 0.90838 0.88484 1.96627 1.91433 1.91873 1.08447 0.91551 0.90566 0.91571 0.88547 0.89189 0.79813 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.23 37.16 0.38 -1.29 15 2 C 0.10 1.08 6.54 -4.04 -0.03 1.05 15 3 N -0.44 -7.51 2.74 -115.78 -0.32 -7.83 15 4 C -0.01 -0.25 11.36 -15.97 -0.18 -0.43 15 5 C -0.01 -0.13 6.93 -82.78 -0.57 -0.71 15 6 C 0.42 12.60 6.92 -34.65 -0.24 12.36 15 7 O -0.55 -17.69 15.44 4.98 0.08 -17.61 15 8 C -0.49 -14.60 9.13 -37.53 -0.34 -14.94 15 9 H 0.08 2.30 7.67 -52.49 -0.40 1.90 15 10 C 0.08 2.17 5.50 -17.31 -0.10 2.08 15 11 N -0.74 -21.73 11.73 55.57 0.65 -21.08 15 12 Si 0.91 20.34 29.56 -169.99 -5.03 15.31 15 13 H -0.26 -5.79 7.11 56.52 0.40 -5.39 15 14 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 15 H -0.26 -5.79 7.11 56.52 0.40 -5.39 15 16 N -0.41 -9.83 10.96 -9.12 -0.10 -9.93 15 17 C 0.16 3.02 8.35 -89.55 -0.75 2.27 15 18 Br 0.04 0.51 33.60 -68.01 -2.29 -1.77 15 19 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 20 H 0.08 0.53 8.14 -51.93 -0.42 0.11 15 21 H 0.07 0.72 8.14 -51.93 -0.42 0.29 15 22 H 0.10 0.90 8.11 -51.93 -0.42 0.48 15 23 H 0.09 0.88 7.98 -51.93 -0.41 0.47 15 24 H 0.18 3.40 8.06 -52.49 -0.42 2.98 15 25 H 0.27 7.20 8.29 -40.82 -0.34 6.86 15 LS Contribution 254.83 15.07 3.84 3.84 Total: -1.00 -34.61 254.83 -7.05 -41.66 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: -2.06 Total: -2.99 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -1.83 Total: 0.40 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.23 Total: -38.84 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.08 Total: -17.61 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Atomic # 35 Polarization: 0.51 SS G_CDS: -2.29 Total: -1.77 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -34.61 -7.05 -41.66 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698452027.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.045 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds