Wall clock time and date at job start Mon Mar 30 2020 06:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.35403 * 126.16439 * 100.00590 * 3 2 1 5 5 C 1.38243 * 106.59638 * 180.02562 * 4 3 2 6 6 C 1.47275 * 126.30683 * 179.97438 * 5 4 3 7 7 O 1.21927 * 119.99805 * 359.97438 * 6 5 4 8 8 C 1.41553 * 120.00307 * 179.97438 * 6 5 4 9 9 H 1.08001 * 119.99900 * 359.97438 * 8 6 5 10 10 C 1.40342 * 119.99922 * 180.02562 * 8 6 5 11 11 N 1.30530 * 119.99865 * 359.97438 * 10 8 6 12 12 Si 1.86799 * 119.99986 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46992 * 59.99175 * 12 10 8 14 14 H 1.48492 * 109.47233 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.46904 * 299.99824 * 12 10 8 16 16 N 1.35042 * 107.39208 * 359.97438 * 5 4 3 17 17 C 1.30377 * 109.07668 * 359.72840 * 16 5 4 18 18 Br 1.89094 * 125.36758 * 180.30038 * 17 16 5 19 19 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 22 22 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 23 23 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 24 24 H 1.07999 * 126.70146 * 359.95868 * 4 3 2 25 25 H 0.97000 * 119.99963 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4636 2.0713 1.0765 5 6 2.8214 3.3264 0.6207 6 6 3.3624 4.4282 1.4344 7 8 3.5318 4.2753 2.6322 8 6 3.6857 5.6648 0.8262 9 1 3.5360 5.8002 -0.2348 10 6 4.2017 6.7146 1.6016 11 7 4.3830 6.5508 2.8838 12 14 4.6290 8.3462 0.7988 13 1 3.4117 8.9251 0.1756 14 1 5.1511 9.2820 1.8268 15 1 5.6634 8.1288 -0.2444 16 7 2.5835 3.3561 -0.7083 17 6 2.1117 2.1998 -1.0827 18 35 1.6286 1.7353 -2.8509 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8934 -0.5139 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 2.5261 1.7117 2.0930 25 1 4.7393 7.2765 3.4199 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698452027.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:08 Heat of formation + Delta-G solvation = -7.021844 kcal Electronic energy + Delta-G solvation = -13197.968246 eV Core-core repulsion = 10643.860309 eV Total energy + Delta-G solvation = -2554.107937 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.990 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.95167 -38.54001 -35.96724 -34.75914 -32.97204 -31.36669 -29.91583 -28.67026 -24.98160 -23.95726 -21.45012 -21.11199 -18.70747 -17.94594 -16.93473 -16.64064 -15.70815 -15.42886 -15.05385 -14.67013 -14.53244 -14.18538 -13.55162 -13.29890 -13.05433 -12.72799 -12.45424 -12.32013 -12.05755 -11.99249 -11.71397 -11.16225 -10.96994 -10.70660 -9.71636 -9.34456 -8.35327 -7.04041 -0.12089 0.68455 1.28856 1.38218 1.53652 1.58578 1.81536 2.24761 2.55002 3.65276 3.72437 3.75690 4.02144 4.28962 4.31718 4.45120 4.67894 4.76877 5.05227 5.17839 5.21485 5.59000 5.90754 6.09302 6.67501 6.73221 6.92192 8.24606 8.48997 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.029807 B = 0.006186 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.156827 B = 4525.621686 C = 5365.081006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.083 3.917 3 N -0.426 5.426 4 C 0.012 3.988 5 C -0.063 4.063 6 C 0.404 3.596 7 O -0.592 6.592 8 C -0.529 4.529 9 H 0.078 0.922 10 C 0.026 3.974 11 N -0.782 5.782 12 Si 0.995 3.005 13 H -0.256 1.256 14 H -0.261 1.261 15 H -0.256 1.256 16 N -0.455 5.455 17 C 0.160 3.840 18 Br 0.087 6.913 19 H 0.056 0.944 20 H 0.113 0.887 21 H 0.052 0.948 22 H 0.122 0.878 23 H 0.113 0.887 24 H 0.202 0.798 25 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.368 -13.767 -11.019 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.037 4.037 3 N -0.110 5.110 4 C -0.128 4.128 5 C -0.194 4.194 6 C 0.303 3.697 7 O -0.486 6.486 8 C -0.560 4.560 9 H 0.096 0.904 10 C -0.193 4.193 11 N -0.411 5.411 12 Si 0.813 3.187 13 H -0.180 1.180 14 H -0.185 1.185 15 H -0.180 1.180 16 N -0.177 5.177 17 C -0.178 4.178 18 Br 0.167 6.833 19 H 0.076 0.924 20 H 0.132 0.868 21 H 0.071 0.929 22 H 0.140 0.860 23 H 0.131 0.869 24 H 0.219 0.781 25 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.357 -13.499 -11.450 19.169 hybrid contribution 0.178 0.179 0.692 0.737 sum -7.179 -13.321 -10.757 18.566 Atomic orbital electron populations 1.22168 0.92498 1.05115 1.02560 1.22483 0.97105 0.76982 1.07089 1.45476 1.46125 1.13882 1.05517 1.23445 1.02844 0.92744 0.93744 1.22837 1.08651 0.97425 0.90527 1.17602 0.79106 0.86357 0.86591 1.90473 1.56437 1.84457 1.17203 1.21213 1.39210 0.98446 0.97107 0.90378 1.27217 0.92581 1.04699 0.94852 1.70068 1.29158 1.34004 1.07891 0.85122 0.79826 0.74920 0.78842 1.17982 1.18462 1.17968 1.70342 1.14560 1.19795 1.13013 1.25152 1.11822 0.89981 0.90885 1.96667 1.90894 1.91185 1.04579 0.92447 0.86845 0.92880 0.85993 0.86897 0.78129 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 10.23 71.98 0.74 -1.95 15 2 C 0.08 1.58 6.54 86.38 0.57 2.15 15 3 N -0.43 -13.83 2.74 -520.23 -1.42 -15.25 15 4 C 0.01 0.48 11.36 84.14 0.96 1.43 15 5 C -0.06 -3.32 6.93 41.03 0.28 -3.04 15 6 C 0.40 25.33 6.92 25.47 0.18 25.51 15 7 O -0.59 -40.25 15.44 -5.08 -0.08 -40.33 15 8 C -0.53 -32.56 9.13 23.60 0.22 -32.35 15 9 H 0.08 4.67 7.67 -2.91 -0.02 4.65 15 10 C 0.03 1.47 5.50 85.40 0.47 1.94 15 11 N -0.78 -47.50 11.73 21.89 0.26 -47.24 15 12 Si 0.99 42.21 29.56 68.60 2.03 44.24 15 13 H -0.26 -10.43 7.11 99.48 0.71 -9.72 15 14 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 15 H -0.26 -10.42 7.11 99.48 0.71 -9.71 15 16 N -0.46 -22.07 10.96 -182.75 -2.00 -24.07 15 17 C 0.16 5.96 8.35 179.97 1.50 7.46 15 18 Br 0.09 2.28 33.60 -20.37 -0.68 1.60 15 19 H 0.06 1.05 8.14 -2.39 -0.02 1.03 15 20 H 0.11 1.05 8.14 -2.39 -0.02 1.03 15 21 H 0.05 1.02 8.14 -2.39 -0.02 1.00 15 22 H 0.12 1.78 8.11 -2.39 -0.02 1.77 15 23 H 0.11 1.71 7.98 -2.39 -0.02 1.70 15 24 H 0.20 7.38 8.06 -2.91 -0.02 7.35 15 25 H 0.28 15.30 8.29 -92.71 -0.77 14.53 15 Total: -1.00 -79.96 254.83 4.21 -75.75 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: 1.21 Total: 4.15 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 4.91 Total: 1.15 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -3.17 Total: -86.56 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -0.08 Total: -40.33 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 35 Polarization: 2.28 SS G_CDS: -0.68 Total: 1.60 kcal Total: -79.96 4.21 -75.75 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698452027.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.729 kcal (2) G-P(sol) polarization free energy of solvation -79.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds